| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316949
Identifier: 158316949
GI number: 158316949
Start: 6235739
End: 6236554
Strand: Reverse
Name: 158316949
Synonym: Franean1_5193
Alternate gene names: NA
Gene position: 6236554-6235739 (Counterclockwise)
Preceding gene: 158316950
Following gene: 158316946
Centisome position: 69.43
GC content: 75.0
Gene sequence:
>816_bases GTGACCCCGGTCGACGGCGTCGCGGTACCGGGGGCGGGCTCTGGCCTCCCGGCCGGGCACGACGACGCCGGTGGCCGGGC CGGTGGGATCGCCAGCCGGGCCGGTGGGTTCGGTGGCCGGGCCGGTGGGTCCGGCGGCCGCGGCACCGGTGGTGAGCCAC CGGTCACGCTGGCAGAGGCGGTGGGCGGCCCGCGCGGGATCATCGACAGTGCCATTCCGACGGTGGCGTTCGTCACCGTC AACGCCGAGGCCGGCCTGACGGCGGGGATCGTCGTCGCGATCGCGGCGGCGGTCGGGCTCGTGGTCCTGCGGGTGGTGCG GCACGAGCCCGTCCAGCAGGCGTTCTCCGGGCTCTTCGCGGTCGGGTTCGCCGCCTTCATCGCCTCCCGGACGGGCAGCG CCGAGGGCTTCTTCCTGCCCTCGATAGCGAAGAACGCCGTCTGCGCCGTCGTCGGCCTCGGCTCGGTCCTCGTCGGGCGT CCCGTCGGCGGCTACGTGATGGCCGGCTTCGACCAGCGGTACTCCAACTGGCGGGAGACACCGTCCGTCCGGCGGGCGGC GGTCTGGGCCACCTTCGTCTGGATCGCGGTGTTCGCGGCGCGGTTCGCGATCCAGGGCGTGCTCTACCTCGCGGGGGAGT CCGGCTGGCTCGCGGCGGCGAACATCGTGCTGGGTCTGCCGTTGTTCGGCGCGGCCGTGCTGGCCACCTTCGCGATCGTC CGGCGCCTCGCCCCGCTGGCGGAGGACGAGCCGTCCGGGGAGGACGGTCAGACCGGCGAACCCGGCCAGCTCGCCGCGGG CATCCCGAACGACTGA
Upstream 100 bases:
>100_bases GCCCGGCGACAGGACTACACCGCCCATGCCACCAGCGTCTCCGCAGGATCCGTCAGTGCCGAACCCGGCGACGGGTCCGG GCGACCCCGGCGGAGCGGCC
Downstream 100 bases:
>100_bases CAGACCGCGCCGAACCCCCGGCGCGACGACCGGGATCGGCTAGAGCACTCCGGAGACGCGCTGGTTCCGGCTGGCGTCGG CGGGGACGGCGCCGAGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Integral Membrane Protein; Conserved Alanine And Leucine Rich Membrane Protein; Mn2+/Zn2+ ABC Transport System Permease
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MTPVDGVAVPGAGSGLPAGHDDAGGRAGGIASRAGGFGGRAGGSGGRGTGGEPPVTLAEAVGGPRGIIDSAIPTVAFVTV NAEAGLTAGIVVAIAAAVGLVVLRVVRHEPVQQAFSGLFAVGFAAFIASRTGSAEGFFLPSIAKNAVCAVVGLGSVLVGR PVGGYVMAGFDQRYSNWRETPSVRRAAVWATFVWIAVFAARFAIQGVLYLAGESGWLAAANIVLGLPLFGAAVLATFAIV RRLAPLAEDEPSGEDGQTGEPGQLAAGIPND
Sequences:
>Translated_271_residues MTPVDGVAVPGAGSGLPAGHDDAGGRAGGIASRAGGFGGRAGGSGGRGTGGEPPVTLAEAVGGPRGIIDSAIPTVAFVTV NAEAGLTAGIVVAIAAAVGLVVLRVVRHEPVQQAFSGLFAVGFAAFIASRTGSAEGFFLPSIAKNAVCAVVGLGSVLVGR PVGGYVMAGFDQRYSNWRETPSVRRAAVWATFVWIAVFAARFAIQGVLYLAGESGWLAAANIVLGLPLFGAAVLATFAIV RRLAPLAEDEPSGEDGQTGEPGQLAAGIPND >Mature_270_residues TPVDGVAVPGAGSGLPAGHDDAGGRAGGIASRAGGFGGRAGGSGGRGTGGEPPVTLAEAVGGPRGIIDSAIPTVAFVTVN AEAGLTAGIVVAIAAAVGLVVLRVVRHEPVQQAFSGLFAVGFAAFIASRTGSAEGFFLPSIAKNAVCAVVGLGSVLVGRP VGGYVMAGFDQRYSNWRETPSVRRAAVWATFVWIAVFAARFAIQGVLYLAGESGWLAAANIVLGLPLFGAAVLATFAIVR RLAPLAEDEPSGEDGQTGEPGQLAAGIPND
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26888; Mature: 26757
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPVDGVAVPGAGSGLPAGHDDAGGRAGGIASRAGGFGGRAGGSGGRGTGGEPPVTLAEA CCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH VGGPRGIIDSAIPTVAFVTVNAEAGLTAGIVVAIAAAVGLVVLRVVRHEPVQQAFSGLFA CCCCHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH VGFAAFIASRTGSAEGFFLPSIAKNAVCAVVGLGSVLVGRPVGGYVMAGFDQRYSNWRET HHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCC PSVRRAAVWATFVWIAVFAARFAIQGVLYLAGESGWLAAANIVLGLPLFGAAVLATFAIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH RRLAPLAEDEPSGEDGQTGEPGQLAAGIPND HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TPVDGVAVPGAGSGLPAGHDDAGGRAGGIASRAGGFGGRAGGSGGRGTGGEPPVTLAEA CCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH VGGPRGIIDSAIPTVAFVTVNAEAGLTAGIVVAIAAAVGLVVLRVVRHEPVQQAFSGLFA CCCCHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH VGFAAFIASRTGSAEGFFLPSIAKNAVCAVVGLGSVLVGRPVGGYVMAGFDQRYSNWRET HHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCC PSVRRAAVWATFVWIAVFAARFAIQGVLYLAGESGWLAAANIVLGLPLFGAAVLATFAIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH RRLAPLAEDEPSGEDGQTGEPGQLAAGIPND HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA