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The map label for this gene is ycdC [C]

Identifier: 158316937

GI number: 158316937

Start: 6219026

End: 6219598

Strand: Direct

Name: ycdC [C]

Synonym: Franean1_5181

Alternate gene names: 158316937

Gene position: 6219026-6219598 (Clockwise)

Preceding gene: 158316936

Following gene: 158316938

Centisome position: 69.24

GC content: 68.59

Gene sequence:

>573_bases
TTGAGTGACCACTACCTTGAGGTCGTGACCCCAAGGACGACCGGCGGCACCGGCACCCGGATGAGCGCGGAGCAACGACG
CGCGGTGGTGCTCGCGGCGGCCGTCGAGGAGTTCGCCCTGGGCGGCCTGACCGGCACGTCCACCGAGGCGATCGCCAGCC
GTGCCGGCATCTCCCAGCCCTATCTGTTCCGACTCTTCCCCACCAAGAAGGAACTGTTCCTGGCGGCCGTCCGGGCCACC
TTCACCCTGACTCGCGAACGCTTCGAGACCGCGGCGGGCGACCTGGTCGGCGCCGACGCCCTGACGGCGATCGGGTCCGC
CTACGACGAGCTGCTCACCGACCGCACCTACCTGCTCATGCAGATGCAGAGCTACGCCTCCTGCGGCGACCCGGGCATCC
AGGAGGTCACCCGCCAGGGTTTCCGGGACCTGTGGCAGACCGTCGAACGCGTCAGCGGATGCGACGACGAGGAACTGCGC
ACGTTCTTCGGGCACGGCATGCTGCTCAACGTCGTGGCCGCGATGAACCTGCAGGAGATCAGCGACCGCTGGGCCCGGGA
GATCTGCAGCTAG

Upstream 100 bases:

>100_bases
GCGGGCGGACGCCGGCACTGCCCGCCCGCCCGGAGTGCCCGTCCGAGGCCGCCGCTCGGATCCGCCGCGCTCCGGGCCGA
CATTCTCCTTGACTTGATTA

Downstream 100 bases:

>100_bases
ACCGGCCTGAGTCGGCCCACGCCGTTCCAGACCCGCGTTCGCCTCCCTCTCACCCGTTCCACCTGTCCGCATCCTCGTTC
GCACCACAAATCTAGTGACC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR-Family Transcriptional Regulator; TetR Family Regulator; Regulatory Protein TetR; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MSDHYLEVVTPRTTGGTGTRMSAEQRRAVVLAAAVEEFALGGLTGTSTEAIASRAGISQPYLFRLFPTKKELFLAAVRAT
FTLTRERFETAAGDLVGADALTAIGSAYDELLTDRTYLLMQMQSYASCGDPGIQEVTRQGFRDLWQTVERVSGCDDEELR
TFFGHGMLLNVVAAMNLQEISDRWAREICS

Sequences:

>Translated_190_residues
MSDHYLEVVTPRTTGGTGTRMSAEQRRAVVLAAAVEEFALGGLTGTSTEAIASRAGISQPYLFRLFPTKKELFLAAVRAT
FTLTRERFETAAGDLVGADALTAIGSAYDELLTDRTYLLMQMQSYASCGDPGIQEVTRQGFRDLWQTVERVSGCDDEELR
TFFGHGMLLNVVAAMNLQEISDRWAREICS
>Mature_189_residues
SDHYLEVVTPRTTGGTGTRMSAEQRRAVVLAAAVEEFALGGLTGTSTEAIASRAGISQPYLFRLFPTKKELFLAAVRATF
TLTRERFETAAGDLVGADALTAIGSAYDELLTDRTYLLMQMQSYASCGDPGIQEVTRQGFRDLWQTVERVSGCDDEELRT
FFGHGMLLNVVAAMNLQEISDRWAREICS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20874; Mature: 20743

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDHYLEVVTPRTTGGTGTRMSAEQRRAVVLAAAVEEFALGGLTGTSTEAIASRAGISQP
CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
YLFRLFPTKKELFLAAVRATFTLTRERFETAAGDLVGADALTAIGSAYDELLTDRTYLLM
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMQSYASCGDPGIQEVTRQGFRDLWQTVERVSGCDDEELRTFFGHGMLLNVVAAMNLQEI
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHH
SDRWAREICS
HHHHHHHHCC
>Mature Secondary Structure 
SDHYLEVVTPRTTGGTGTRMSAEQRRAVVLAAAVEEFALGGLTGTSTEAIASRAGISQP
CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
YLFRLFPTKKELFLAAVRATFTLTRERFETAAGDLVGADALTAIGSAYDELLTDRTYLLM
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMQSYASCGDPGIQEVTRQGFRDLWQTVERVSGCDDEELRTFFGHGMLLNVVAAMNLQEI
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHH
SDRWAREICS
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA