| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158316862
Identifier: 158316862
GI number: 158316862
Start: 6113089
End: 6114384
Strand: Reverse
Name: 158316862
Synonym: Franean1_5105
Alternate gene names: NA
Gene position: 6114384-6113089 (Counterclockwise)
Preceding gene: 158316863
Following gene: 158316861
Centisome position: 68.07
GC content: 77.55
Gene sequence:
>1296_bases ATGACCGCTCCCGCGCACCCGCTGCCCCGCAGCGGTCGCGCCCGTCCGGGTCGTCGCGCCTCCGGGTCCGAGCACCACGC GACAGACCACGACGCGGCCGCCTACACCGGCGCCGCGCACGACGGCACCGCGTACGCCTACGACGTCGCCGCGTTCGAGA GCACCGGCTACGACGACACGCCCTACGACAGCGCGCCCTACGACAGCGCTCCCTACGAGGACGCGCCGTACGGCGCGTCC GGCTACGGCGACCCCGTCTATGACGACTCCGCATACGGCGGCGTCAAGTACGGCGATACGGCCCCCGGCGAGCCCGTGGC CGGCGAGCCCGCGTTCGGCGATTCCACGGCCGGTGACCTCGCGGATGGCGGGTCGCCCGTCGGGGAGCCCGCGTACGCCG ACGAAGCCGGACGCCGCGCCGACCCGTCCGACGAGGTGGCCGTGCCCGGCCGTGCCCGTCGCCGGCCGGTCGCCGCCGGC GTGGGCGCGGTAGGCGCCGGAGCGCCCGCCCGCTCGTCCAGCGCCACGCGCACGACCGGCGCGCGCACGACCGCGGGGCA CACCGTCCCGGCACGGCCCGGCAGCGCGCGCTCGGGCACGGGACGGACAGCCACCGGACGATCGGGAACGGGCCGGTCCG GTGCGGGACGTCGGCCGTCCGCGATGGCGGTCGGCGCGACCACGGTTCCCCTGCTCGACTCGCCGCTGCGGAGGGGAACG CGGCCGGGGCTGTCGGTGCTGCGGGTGCCGGCGCGGTCCACGGCGCCGCGCGGGCCGTTCGTGGTGCTGCTGCTCGTGCT GATGGGGGCGGGGCTGCTGTCGCTGCTCCTGCTCAACACGGCGCTGATGGAGAACTCCTTCCACGCCGACGAGCTCGAGC GGCAGTCCACCGAGCTGACCCGGCAGGAGCAGCAGCTGTCTCTCCAGCTCGACGAGCAGTCCGACCCGGGGCAGCTCGCC GCCCGCGCGAACCAGCTCGGGATGGTGCCCGGCGGCGTTCCCGAGTACCTGCCGGCCAACGCGCCGCTGCCGCCCGGGGC GCGCGTCCTGACCCGGGACGCGGGCAGCGGCATGCTGCTCGTCGTGGTCCCGGGCCCGTCGGCGGCTCCGGCTCCGGCCG GCGCCGCCGCGGCGACGGACTCCGCGGCCACCCAGTCCGGCGCCTCGGCTCAGTCGGGCGCCTCCAGCGCGGGTGGCACG TCCACCCAGCCCGCGGCTGGCGGCGAGGCGGCCGCGTCCGCCGCCGATCCGCAGGCCCGTACCGGTACCGACGGAGAGGC GGGAGCCGGTCAGTGA
Upstream 100 bases:
>100_bases AGATCGAACAGAACGCGCGCGCCGGGTCTGTCCGGCTGCGCGCGGCGGAACGCACGGCGGCCGAACCGGGCCGCGCGCAC AACCCGACCGGAGGTGTCCG
Downstream 100 bases:
>100_bases GCCAGACGACCCGCGGTCCGTCCTCCGGCCGCGGTCGGAACCGACTCCGTCTCGTCACGAACCCGCACCCGGGGAGCCCG GACTCGCGGTCCGCGCGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 431; Mature: 430
Protein sequence:
>431_residues MTAPAHPLPRSGRARPGRRASGSEHHATDHDAAAYTGAAHDGTAYAYDVAAFESTGYDDTPYDSAPYDSAPYEDAPYGAS GYGDPVYDDSAYGGVKYGDTAPGEPVAGEPAFGDSTAGDLADGGSPVGEPAYADEAGRRADPSDEVAVPGRARRRPVAAG VGAVGAGAPARSSSATRTTGARTTAGHTVPARPGSARSGTGRTATGRSGTGRSGAGRRPSAMAVGATTVPLLDSPLRRGT RPGLSVLRVPARSTAPRGPFVVLLLVLMGAGLLSLLLLNTALMENSFHADELERQSTELTRQEQQLSLQLDEQSDPGQLA ARANQLGMVPGGVPEYLPANAPLPPGARVLTRDAGSGMLLVVVPGPSAAPAPAGAAAATDSAATQSGASAQSGASSAGGT STQPAAGGEAAASAADPQARTGTDGEAGAGQ
Sequences:
>Translated_431_residues MTAPAHPLPRSGRARPGRRASGSEHHATDHDAAAYTGAAHDGTAYAYDVAAFESTGYDDTPYDSAPYDSAPYEDAPYGAS GYGDPVYDDSAYGGVKYGDTAPGEPVAGEPAFGDSTAGDLADGGSPVGEPAYADEAGRRADPSDEVAVPGRARRRPVAAG VGAVGAGAPARSSSATRTTGARTTAGHTVPARPGSARSGTGRTATGRSGTGRSGAGRRPSAMAVGATTVPLLDSPLRRGT RPGLSVLRVPARSTAPRGPFVVLLLVLMGAGLLSLLLLNTALMENSFHADELERQSTELTRQEQQLSLQLDEQSDPGQLA ARANQLGMVPGGVPEYLPANAPLPPGARVLTRDAGSGMLLVVVPGPSAAPAPAGAAAATDSAATQSGASAQSGASSAGGT STQPAAGGEAAASAADPQARTGTDGEAGAGQ >Mature_430_residues TAPAHPLPRSGRARPGRRASGSEHHATDHDAAAYTGAAHDGTAYAYDVAAFESTGYDDTPYDSAPYDSAPYEDAPYGASG YGDPVYDDSAYGGVKYGDTAPGEPVAGEPAFGDSTAGDLADGGSPVGEPAYADEAGRRADPSDEVAVPGRARRRPVAAGV GAVGAGAPARSSSATRTTGARTTAGHTVPARPGSARSGTGRTATGRSGTGRSGAGRRPSAMAVGATTVPLLDSPLRRGTR PGLSVLRVPARSTAPRGPFVVLLLVLMGAGLLSLLLLNTALMENSFHADELERQSTELTRQEQQLSLQLDEQSDPGQLAA RANQLGMVPGGVPEYLPANAPLPPGARVLTRDAGSGMLLVVVPGPSAAPAPAGAAAATDSAATQSGASAQSGASSAGGTS TQPAAGGEAAASAADPQARTGTDGEAGAGQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42713; Mature: 42582
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPAHPLPRSGRARPGRRASGSEHHATDHDAAAYTGAAHDGTAYAYDVAAFESTGYDDT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEHHHHCCCCCCC PYDSAPYDSAPYEDAPYGASGYGDPVYDDSAYGGVKYGDTAPGEPVAGEPAFGDSTAGDL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ADGGSPVGEPAYADEAGRRADPSDEVAVPGRARRRPVAAGVGAVGAGAPARSSSATRTTG CCCCCCCCCCCHHHHCCCCCCCCCCEECCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCC ARTTAGHTVPARPGSARSGTGRTATGRSGTGRSGAGRRPSAMAVGATTVPLLDSPLRRGT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHCCHHHHCC RPGLSVLRVPARSTAPRGPFVVLLLVLMGAGLLSLLLLNTALMENSFHADELERQSTELT CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH RQEQQLSLQLDEQSDPGQLAARANQLGMVPGGVPEYLPANAPLPPGARVLTRDAGSGMLL HHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCEEE VVVPGPSAAPAPAGAAAATDSAATQSGASAQSGASSAGGTSTQPAAGGEAAASAADPQAR EEECCCCCCCCCCCCHHHCCHHHHHCCCCHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCC TGTDGEAGAGQ CCCCCCCCCCC >Mature Secondary Structure TAPAHPLPRSGRARPGRRASGSEHHATDHDAAAYTGAAHDGTAYAYDVAAFESTGYDDT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEHHHHCCCCCCC PYDSAPYDSAPYEDAPYGASGYGDPVYDDSAYGGVKYGDTAPGEPVAGEPAFGDSTAGDL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ADGGSPVGEPAYADEAGRRADPSDEVAVPGRARRRPVAAGVGAVGAGAPARSSSATRTTG CCCCCCCCCCCHHHHCCCCCCCCCCEECCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCC ARTTAGHTVPARPGSARSGTGRTATGRSGTGRSGAGRRPSAMAVGATTVPLLDSPLRRGT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHCCHHHHCC RPGLSVLRVPARSTAPRGPFVVLLLVLMGAGLLSLLLLNTALMENSFHADELERQSTELT CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH RQEQQLSLQLDEQSDPGQLAARANQLGMVPGGVPEYLPANAPLPPGARVLTRDAGSGMLL HHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCEEE VVVPGPSAAPAPAGAAAATDSAATQSGASAQSGASSAGGTSTQPAAGGEAAASAADPQAR EEECCCCCCCCCCCCHHHCCHHHHHCCCCHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCC TGTDGEAGAGQ CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA