| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316828
Identifier: 158316828
GI number: 158316828
Start: 6070967
End: 6072178
Strand: Reverse
Name: 158316828
Synonym: Franean1_5071
Alternate gene names: NA
Gene position: 6072178-6070967 (Counterclockwise)
Preceding gene: 158316831
Following gene: 158316827
Centisome position: 67.6
GC content: 73.35
Gene sequence:
>1212_bases ATGCCTCCGGGCTCGCAGGATTCGGGACATGCGCCAAGCACGGGGGCCTTGGACCATCACACCTCGGACAGCACCACCTC GGACAGCACCACCTCGGATGACGCCGTCCCGGGTCACGCCACCTCGGACACATCAGACGCCCGCCACCGTGCCACTCGGT GGATCCAGCGGAGCCGGTGGAGGAAACAGCGGAGGACGCAATCGATGGACGCCACCTCACGGCGTCGACTCATCGCGGTC GGCGTCCTGTTCCCGCTGGACCTCCTCGTCCCGCGAGGCGGCGGCATGAGCCCGTCCAGCGATGTGCTCGACCACCTCGA CGACAGGGTCGCCCAGCTCACCGCGGGTTACGAGCGGGCCCCGATCGGGGCGACCGCCGTCCACCTGCGCCGTCACCTCC CCGTCGTCCGCTCGCTGCTGCAGCGTGACGTCGTTCCGCAGGCGACGCGGCTGCGGCTGCACCGGGCCGCCGGCCGGCTC GTCGCCCTCTGGGCAGCCACCCGGCACGACCTCGGCGACCTGCCCGGCGCCGTCCTCGCCTTCGAGGAGGCATTCGTGCA CGCGGCCGAGGCCCGCGACGAGGAGCTGATGTGCTGGGTGCGGCTGTGGCAGTCGTCGCTGACGCGCAAGGCCGGCCGGC CGGCGGACGCGGTCGCGCTCGCCGCGTCGGGAGCTGCCCTGGTCGGCCGCGGGAGCCCGGCCGCGGCCCGCGCCGCCGCC ATCGAGGCTCGAGCGCACGGCACTCTCGGTGACCGGTGGGCGGTGCACGAGGCGGTCGGCCGGGCCTGGAGCATCGCGGG AACACTGAGCGCCGAACAGCTCGGCCGCCCCGGGTTCTCGATCGACACGCTGCACGTGCTGACGCTGTCAGAGCTGTCGG CGGCCGCGTACGTCGAGCTCGGTATGCCGGGCGCGGCGAGCGTCTACACCGACGCGGCGATCCACCACCTGGACGCCGTA GGCGCCACCGGGCTCCGCTCGATGACCCGGATCGCCGCGGCCACCGCAGCGGCCAAGCGGCGGGACCTCGACCACGCCGT CGAGCTGGTCGACGAGGCGCTGAACATCTCCCGCCACCGCCCGAGCATCGTCATCGGCGGGCGCGCCGAGCGGTTCGTCG GCGAGGCCCGCGGCTACCTCGGATGGCACTCCCTCCTCGACGACCTCGACGAACGTCTCCGGACCTGGCGGTCGCCCCGT CTTACTACCTGA
Upstream 100 bases:
>100_bases ACGTTCTGGGCCGGGACCAGCAGGGACGGAGCGGTCGGACACGTGTGCGTACGGCTGTGAGGCCGATCTGTGTCCTTGCG TGGTACCTGAGGGTGACGGA
Downstream 100 bases:
>100_bases CCCTGCGTTCTGTACTCACAACCTTCCTTTGCGTGTTCCGACTATGCCTCCTTTTCGGTTGAATTAGATCGATAATTTAG ACGGAGTATAATTTCTGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 402
Protein sequence:
>403_residues MPPGSQDSGHAPSTGALDHHTSDSTTSDSTTSDDAVPGHATSDTSDARHRATRWIQRSRWRKQRRTQSMDATSRRRLIAV GVLFPLDLLVPRGGGMSPSSDVLDHLDDRVAQLTAGYERAPIGATAVHLRRHLPVVRSLLQRDVVPQATRLRLHRAAGRL VALWAATRHDLGDLPGAVLAFEEAFVHAAEARDEELMCWVRLWQSSLTRKAGRPADAVALAASGAALVGRGSPAAARAAA IEARAHGTLGDRWAVHEAVGRAWSIAGTLSAEQLGRPGFSIDTLHVLTLSELSAAAYVELGMPGAASVYTDAAIHHLDAV GATGLRSMTRIAAATAAAKRRDLDHAVELVDEALNISRHRPSIVIGGRAERFVGEARGYLGWHSLLDDLDERLRTWRSPR LTT
Sequences:
>Translated_403_residues MPPGSQDSGHAPSTGALDHHTSDSTTSDSTTSDDAVPGHATSDTSDARHRATRWIQRSRWRKQRRTQSMDATSRRRLIAV GVLFPLDLLVPRGGGMSPSSDVLDHLDDRVAQLTAGYERAPIGATAVHLRRHLPVVRSLLQRDVVPQATRLRLHRAAGRL VALWAATRHDLGDLPGAVLAFEEAFVHAAEARDEELMCWVRLWQSSLTRKAGRPADAVALAASGAALVGRGSPAAARAAA IEARAHGTLGDRWAVHEAVGRAWSIAGTLSAEQLGRPGFSIDTLHVLTLSELSAAAYVELGMPGAASVYTDAAIHHLDAV GATGLRSMTRIAAATAAAKRRDLDHAVELVDEALNISRHRPSIVIGGRAERFVGEARGYLGWHSLLDDLDERLRTWRSPR LTT >Mature_402_residues PPGSQDSGHAPSTGALDHHTSDSTTSDSTTSDDAVPGHATSDTSDARHRATRWIQRSRWRKQRRTQSMDATSRRRLIAVG VLFPLDLLVPRGGGMSPSSDVLDHLDDRVAQLTAGYERAPIGATAVHLRRHLPVVRSLLQRDVVPQATRLRLHRAAGRLV ALWAATRHDLGDLPGAVLAFEEAFVHAAEARDEELMCWVRLWQSSLTRKAGRPADAVALAASGAALVGRGSPAAARAAAI EARAHGTLGDRWAVHEAVGRAWSIAGTLSAEQLGRPGFSIDTLHVLTLSELSAAAYVELGMPGAASVYTDAAIHHLDAVG ATGLRSMTRIAAATAAAKRRDLDHAVELVDEALNISRHRPSIVIGGRAERFVGEARGYLGWHSLLDDLDERLRTWRSPRL TT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43332; Mature: 43201
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPGSQDSGHAPSTGALDHHTSDSTTSDSTTSDDAVPGHATSDTSDARHRATRWIQRSRW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH RKQRRTQSMDATSRRRLIAVGVLFPLDLLVPRGGGMSPSSDVLDHLDDRVAQLTAGYERA HHHHHHHHCCHHHHHHEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC PIGATAVHLRRHLPVVRSLLQRDVVPQATRLRLHRAAGRLVALWAATRHDLGDLPGAVLA CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEHHHHHHHHHCCCHHHHH FEEAFVHAAEARDEELMCWVRLWQSSLTRKAGRPADAVALAASGAALVGRGSPAAARAAA HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCHHHHHHH IEARAHGTLGDRWAVHEAVGRAWSIAGTLSAEQLGRPGFSIDTLHVLTLSELSAAAYVEL HHHHHCCCCCCHHHHHHHHCCHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHEEEE GMPGAASVYTDAAIHHLDAVGATGLRSMTRIAAATAAAKRRDLDHAVELVDEALNISRHR CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PSIVIGGRAERFVGEARGYLGWHSLLDDLDERLRTWRSPRLTT CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PPGSQDSGHAPSTGALDHHTSDSTTSDSTTSDDAVPGHATSDTSDARHRATRWIQRSRW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH RKQRRTQSMDATSRRRLIAVGVLFPLDLLVPRGGGMSPSSDVLDHLDDRVAQLTAGYERA HHHHHHHHCCHHHHHHEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC PIGATAVHLRRHLPVVRSLLQRDVVPQATRLRLHRAAGRLVALWAATRHDLGDLPGAVLA CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEHHHHHHHHHCCCHHHHH FEEAFVHAAEARDEELMCWVRLWQSSLTRKAGRPADAVALAASGAALVGRGSPAAARAAA HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCHHHHHHH IEARAHGTLGDRWAVHEAVGRAWSIAGTLSAEQLGRPGFSIDTLHVLTLSELSAAAYVEL HHHHHCCCCCCHHHHHHHHCCHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHEEEE GMPGAASVYTDAAIHHLDAVGATGLRSMTRIAAATAAAKRRDLDHAVELVDEALNISRHR CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PSIVIGGRAERFVGEARGYLGWHSLLDDLDERLRTWRSPRLTT CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA