| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316761
Identifier: 158316761
GI number: 158316761
Start: 5995555
End: 5996406
Strand: Reverse
Name: 158316761
Synonym: Franean1_4999
Alternate gene names: NA
Gene position: 5996406-5995555 (Counterclockwise)
Preceding gene: 158316762
Following gene: 158316760
Centisome position: 66.76
GC content: 75.12
Gene sequence:
>852_bases GTGACCGGCGAGCTGCCGCCCCGCGCTCCTCGGCTCCACGTGCCGCCGCCCGGCGAGTCGCCTCCCGGTGAGCTGCCGCT CGGGGAGCCGCCGGACACCACGGGGCCGGCCGGCGGCGGCCCCGCTGTCGTGCGCCCGACTGTCGGGAAGGCGACGAGCG GCGGCCCCGGCTCCCGGGTGCGGCTGTTGCGATACGTGACGGTTCTGTTGCTCGCGGTCCTGGGATTCGGTGTCGCCGTG ATGATCCGGATCGCCGACACGCCCGAGCGGCTGGCGGCGGCCCGGCCCGACGAGCTCGCCACCGAGCTGGAGGACCTCGC CGTCGCCGGGCGGCGGCTGGAGGTGGAGGCCACCGGTCTCGAGCAGACCCGCGCCGCGGTCGCCGACGGCGCGCGCGGCG ACGCCGACCTCGACCGGGCCCGCCGCGAGGCCGAGGCCCTGGCAGTGCTCGCCGGCACCGGCCCGGCGACCGGGCCGGGC GTCACCCTCCGCATCGACGACCCGCGGGGGACCGTAGAGGCGTGGATCCTCGTCGACGCCCTGCAGGAGCTGCGGGACGC CGGTGCCGAGGCGATCGAGCTCTCCGGTGTCCGTGTCGTGGCCTCCACCTACATCGTCGACGCTCCCGGCGGCGGTATGA CCGTGGACGGCGGCAGTGTCACGCCGCCCTACGAGCTGCGCGTGGTCGGGGACGCGCACACGCTTGCCCAGGCAATGCGG ATTCCTGGCGGAGTGCTCGATACGGTAGCTACCCGGGATGGCGCGCATGCTGAGGTCACGAACTCGGATCGGATCGAGAT CAGGGCGCTGCGGGCCGTTCCGACCCCCCGTTTTGCCCGTCCAGCCGGTTGA
Upstream 100 bases:
>100_bases CGCTCGGCGTCGGCGGCGCGATGTCGACCGCGATGGTCGTCGTCCTCGGCATCAGGATCTTCACCAACGCGAGCGCGGTC CGCCGATCGCTGCTGAAACT
Downstream 100 bases:
>100_bases GGGGGCGCGCCCCGCGACGACGCCGTCGCGGTGGGCGCCGGCCGTCCGGACGGTCCCATGCGTCCGTCGACACCCGTGCC GGCGCTCGGCACCACGACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MTGELPPRAPRLHVPPPGESPPGELPLGEPPDTTGPAGGGPAVVRPTVGKATSGGPGSRVRLLRYVTVLLLAVLGFGVAV MIRIADTPERLAAARPDELATELEDLAVAGRRLEVEATGLEQTRAAVADGARGDADLDRARREAEALAVLAGTGPATGPG VTLRIDDPRGTVEAWILVDALQELRDAGAEAIELSGVRVVASTYIVDAPGGGMTVDGGSVTPPYELRVVGDAHTLAQAMR IPGGVLDTVATRDGAHAEVTNSDRIEIRALRAVPTPRFARPAG
Sequences:
>Translated_283_residues MTGELPPRAPRLHVPPPGESPPGELPLGEPPDTTGPAGGGPAVVRPTVGKATSGGPGSRVRLLRYVTVLLLAVLGFGVAV MIRIADTPERLAAARPDELATELEDLAVAGRRLEVEATGLEQTRAAVADGARGDADLDRARREAEALAVLAGTGPATGPG VTLRIDDPRGTVEAWILVDALQELRDAGAEAIELSGVRVVASTYIVDAPGGGMTVDGGSVTPPYELRVVGDAHTLAQAMR IPGGVLDTVATRDGAHAEVTNSDRIEIRALRAVPTPRFARPAG >Mature_282_residues TGELPPRAPRLHVPPPGESPPGELPLGEPPDTTGPAGGGPAVVRPTVGKATSGGPGSRVRLLRYVTVLLLAVLGFGVAVM IRIADTPERLAAARPDELATELEDLAVAGRRLEVEATGLEQTRAAVADGARGDADLDRARREAEALAVLAGTGPATGPGV TLRIDDPRGTVEAWILVDALQELRDAGAEAIELSGVRVVASTYIVDAPGGGMTVDGGSVTPPYELRVVGDAHTLAQAMRI PGGVLDTVATRDGAHAEVTNSDRIEIRALRAVPTPRFARPAG
Specific function: Unknown
COG id: COG3879
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0749 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010273 [H]
Pfam domain/function: PF05949 DUF881 [H]
EC number: NA
Molecular weight: Translated: 29078; Mature: 28947
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGELPPRAPRLHVPPPGESPPGELPLGEPPDTTGPAGGGPAVVRPTVGKATSGGPGSRV CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHH RLLRYVTVLLLAVLGFGVAVMIRIADTPERLAAARPDELATELEDLAVAGRRLEVEATGL HHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCC EQTRAAVADGARGDADLDRARREAEALAVLAGTGPATGPGVTLRIDDPRGTVEAWILVDA HHHHHHHHCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHH LQELRDAGAEAIELSGVRVVASTYIVDAPGGGMTVDGGSVTPPYELRVVGDAHTLAQAMR HHHHHHCCCCEEEECCEEEEEEEEEEECCCCCEEECCCCCCCCEEEEEECCHHHHHHHHH IPGGVLDTVATRDGAHAEVTNSDRIEIRALRAVPTPRFARPAG CCCCHHHHHHCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCC >Mature Secondary Structure TGELPPRAPRLHVPPPGESPPGELPLGEPPDTTGPAGGGPAVVRPTVGKATSGGPGSRV CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHH RLLRYVTVLLLAVLGFGVAVMIRIADTPERLAAARPDELATELEDLAVAGRRLEVEATGL HHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCC EQTRAAVADGARGDADLDRARREAEALAVLAGTGPATGPGVTLRIDDPRGTVEAWILVDA HHHHHHHHCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHH LQELRDAGAEAIELSGVRVVASTYIVDAPGGGMTVDGGSVTPPYELRVVGDAHTLAQAMR HHHHHHCCCCEEEECCEEEEEEEEEEECCCCCEEECCCCCCCCEEEEEECCHHHHHHHHH IPGGVLDTVATRDGAHAEVTNSDRIEIRALRAVPTPRFARPAG CCCCHHHHHHCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]