| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158316696
Identifier: 158316696
GI number: 158316696
Start: 5923693
End: 5924505
Strand: Reverse
Name: 158316696
Synonym: Franean1_4934
Alternate gene names: NA
Gene position: 5924505-5923693 (Counterclockwise)
Preceding gene: 158316697
Following gene: 158316691
Centisome position: 65.96
GC content: 74.78
Gene sequence:
>813_bases ATGGCGCCGGCCCGAGGACGGTCGACCGCCGTAGCCTCGTCCCTCGTGAGACGAGGCGGCAACGGCGACCGAGTGGAGCA CGAGCGGCCTGCGGGCGGGCGGTCGGCGAGGGCGCGGACGGGGGAGGCACATCCCTCGAAGCACTCGGCGGGCGCGGGGT GGCTGCGTCCCGCGGTGTTCGGGGCGATGGACGGTCTGGTCAGTAACGTCGCGCTGATCAGCGGGTTCGCGGGCGGGGAC GCCGGGCGGCCGGCGGTCGTGCTGGCCGGGCTCGCGGGCCTGGCCTCCGGGGCGTTCTCGATGGCGACCGGGGAGTACAC CTCCGTCCGCTCGCAGAACGAGGCGATGCGGGCACAGATCGAGGTCGAACGGCGGGAGCTGGCGCTGTATCCGCAGGCCG AGCACGCCGAGCTGGTCGGGTTCTTCCGCGATCAGGGGGTCGACGCGCCGACCGCCGAGTCGGTGGCCCGCCAGCTGGCG CACAGCCCGGACACGGCGCTGCGCGTGCATGCCCGTAACGAGCTCGGCCTGGATGTGGACGATCTGCCGTCCCCGCTCGG CGCGGCCGGTGCGTCGTTCGGTGCGTTCGCCCTCGGCGCGCTGGTGCCGGTGGCGCCCTACCTGGCCGGGTTCGCCTCGT TCGCGATCGCGGCCGTCCTCGCCGGGCTGGGGCTGTTCGCCCTCGGGGCCGCGGTCAGCCGCTTCACCGAGCGCTCGGCG TTCTACAGCGGCGCCCGCCAGCTCCTGCTGGGCCTGGTCGCGGCTGCCGCCACCTACGGCATCGGCGTCCTGGTCGACGC CTTCATCGCCTGA
Upstream 100 bases:
>100_bases CGACCCGGGAGATCCTCCGCGAGGCCGAGCCCGACCCACAGCGCCGCCCGTTCGTCCACGTGGCCTGAGCGGCTCCGGCG AGGGGGTGTGGCGCTCGCCC
Downstream 100 bases:
>100_bases CGCCTCGCTGTCACACCTGACTTCGAGGCCAGCCGCAGTGGTTCCCGCCGCGGCGGCCGGTGCGCGGCGATCCAATCGCC GCGCACCGGCCGCCGCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Nodulin; Nodulin-Related Protein; Iron And Manganese Transporter; Nodulin-Like Protein-Like Protein; Transmembrane Protein; Nodulin-Related Transmembrane Protein; Nodulin- Domain-Containing Protein; Nodulin-Related Integral Membrane Protein DUF; Mebrane Associated Protein DUF
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MAPARGRSTAVASSLVRRGGNGDRVEHERPAGGRSARARTGEAHPSKHSAGAGWLRPAVFGAMDGLVSNVALISGFAGGD AGRPAVVLAGLAGLASGAFSMATGEYTSVRSQNEAMRAQIEVERRELALYPQAEHAELVGFFRDQGVDAPTAESVARQLA HSPDTALRVHARNELGLDVDDLPSPLGAAGASFGAFALGALVPVAPYLAGFASFAIAAVLAGLGLFALGAAVSRFTERSA FYSGARQLLLGLVAAAATYGIGVLVDAFIA
Sequences:
>Translated_270_residues MAPARGRSTAVASSLVRRGGNGDRVEHERPAGGRSARARTGEAHPSKHSAGAGWLRPAVFGAMDGLVSNVALISGFAGGD AGRPAVVLAGLAGLASGAFSMATGEYTSVRSQNEAMRAQIEVERRELALYPQAEHAELVGFFRDQGVDAPTAESVARQLA HSPDTALRVHARNELGLDVDDLPSPLGAAGASFGAFALGALVPVAPYLAGFASFAIAAVLAGLGLFALGAAVSRFTERSA FYSGARQLLLGLVAAAATYGIGVLVDAFIA >Mature_269_residues APARGRSTAVASSLVRRGGNGDRVEHERPAGGRSARARTGEAHPSKHSAGAGWLRPAVFGAMDGLVSNVALISGFAGGDA GRPAVVLAGLAGLASGAFSMATGEYTSVRSQNEAMRAQIEVERRELALYPQAEHAELVGFFRDQGVDAPTAESVARQLAH SPDTALRVHARNELGLDVDDLPSPLGAAGASFGAFALGALVPVAPYLAGFASFAIAAVLAGLGLFALGAAVSRFTERSAF YSGARQLLLGLVAAAATYGIGVLVDAFIA
Specific function: Unknown
COG id: COG1814
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27451; Mature: 27320
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPARGRSTAVASSLVRRGGNGDRVEHERPAGGRSARARTGEAHPSKHSAGAGWLRPAVF CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH GAMDGLVSNVALISGFAGGDAGRPAVVLAGLAGLASGAFSMATGEYTSVRSQNEAMRAQI HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHH EVERRELALYPQAEHAELVGFFRDQGVDAPTAESVARQLAHSPDTALRVHARNELGLDVD HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHH DLPSPLGAAGASFGAFALGALVPVAPYLAGFASFAIAAVLAGLGLFALGAAVSRFTERSA HCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FYSGARQLLLGLVAAAATYGIGVLVDAFIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure APARGRSTAVASSLVRRGGNGDRVEHERPAGGRSARARTGEAHPSKHSAGAGWLRPAVF CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH GAMDGLVSNVALISGFAGGDAGRPAVVLAGLAGLASGAFSMATGEYTSVRSQNEAMRAQI HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHH EVERRELALYPQAEHAELVGFFRDQGVDAPTAESVARQLAHSPDTALRVHARNELGLDVD HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHH DLPSPLGAAGASFGAFALGALVPVAPYLAGFASFAIAAVLAGLGLFALGAAVSRFTERSA HCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FYSGARQLLLGLVAAAATYGIGVLVDAFIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA