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The map label for this gene is ydiF [H]

Identifier: 158316672

GI number: 158316672

Start: 5894247

End: 5895902

Strand: Reverse

Name: ydiF [H]

Synonym: Franean1_4909

Alternate gene names: 158316672

Gene position: 5895902-5894247 (Counterclockwise)

Preceding gene: 158316676

Following gene: 158316671

Centisome position: 65.64

GC content: 74.88

Gene sequence:

>1656_bases
ATGTCCGCCACTCTCGTCGCCACCGATCTGACCGTGCTGCGGGGCGGCGCCGTCGTCCTCGAAGGGGTGTCCCTGACCGT
CGCCCCCGGTGATCGCCTCGGTGTGGTCGGGCCGAACGGCGTCGGCAAGTCGACGCTGCTGCGGGCACTGGCCGGCCTGG
TACGGCTCGACGGTGGGCGGGTCGAGCTCTCGCCGCCCACCGCCGCGGTCGGGCTGCTGTCCCAGGAGCCCGACCGGCGC
CAGGACGAGACACTGCGCGAGTACCTCGCCCGGCGCACCGGCGTCGCGGCGGCCCAGCAGGCGCTGGACGCCGCGACCGA
GGACCTGACGGCCGGCGTCGCCGGCGCGGACGACGGGTACAGCCTGGCGCTGGAGCGATGGCTGGCGATCGGCGCCGCCG
ACCTTGACGTCCGCGCCGAGCAGGTAATCGCCGATCTCGGGCTGCCCGCCGCGGCGCTGGACCGCCCGACGGCGACGCTG
TCCGGCGGCCAGGCCGCGCGCGGCTCGCTCGCGAGCATCCTGCTGTCCCGCTTCGACATCACCCTGCTCGACGAGCCGAC
CAACGACCTGGACTTCGACGGTCTGGAGCGGCTCGAGCGGTACGTCGAGCAGATGTCGGGCGCGCTGGTGGTGGTCAGCC
ACGACCGGGAGTTCCTCGACCGGTCCATCGACGCCGTCGCCGAGATCGACCAGCATCAGCACGGCGTCACCCGGTACGCC
GGCGGCTGGGACGCCTACCTGGAGGCCCGGGGCCTGGCCCGGCGCCAGGCCCGCGAGCGCTTCGAGCGTTACGCCGACCG
GCGGGCCGGGCTGGTGGAGCAGGTCCAGCGCCAGCGTGAGCAGTCGGTGCGCGGGGCCGTCCGGGCGAAGCGCCGGTCGC
CGGACTCGGACCGCTCGGCGCGCGGCGCGCGGATCGAGGCCGCCACCAAGAGCGCCGGACGGGTCCGCACTCTGCAGACC
CAGCTCGACCGGATGGAGCGCGGCGACGAAGCGGTGGTCGAGCCGCGCAAGGAATGGCAGCTGCGCATGTCGATCGCCGC
CGCCCCCCGGTCGGGCGATGTGGTGGCCACGCTGGACGGTGCCGTCGTCGAGCGGTCCGGGTTCCAGCTCGGCCCGGTCG
ACCTCACGGTCGCCTGGGCGGACCGGATCGTGATCACCGGCCGCAACGGCGGCGGGAAGAGCACGCTGCTGGCCGCGCTG
CTCGGCCGCCAGCCGCTGACCGCCGGCCGGCACTCGCTCGGCTCCGGCGTGCTCCTCGGCGAGGTCGACCAGGCGCGCAC
CCACTTCCGCGGCGAGTCGACGGCGGCCGACGTCGCCGAGGCAGCGACCGGTTCCTCCCCGGCCGACGTCCGGACGCTGT
TCGCGAAGTTCGGGCTGGGCCCAGACCAGATGACCAGGCCCGCCTCGTCCCTGTCGCCCGGCGAGCGGACCAGGGCGGCG
CTCGCGCTCCTGCAGGGCGCCGGAGTGAACTGCCTGGTCCTCGACGAACCGACGAACCACCTCGACCTGCCCGCGATCGA
GCAGCTTGAGCAGGCCGTCGAGGGGTTCGAGGGGACGCTGCTGCTGGTCACCCACGATCGGCGGCTGCTGGAGGCCGTGC
GGGTGACCCGGCGCCTGAGCGTGGATGCCGGGCAGGTCACCGAGGCCCCCGCGTGA

Upstream 100 bases:

>100_bases
ACGTCGCCGGTTGCTGATCGGATCGGCAGCTCCCGGTCACGACGGTGTGTGGTGGTGAACGGCCGAGCGGGACACATTCC
CGGCCAGGGACACTGGACAC

Downstream 100 bases:

>100_bases
CACCGGCGGGGCGGGTATTTTCGGGCGGAGCACGCCAGCCGCGCAAGCCGGGCATCATGCCGCCGGGCATCAGGATGTCG
GGTACCGGGAGGTCGTCGCC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 550

Protein sequence:

>551_residues
MSATLVATDLTVLRGGAVVLEGVSLTVAPGDRLGVVGPNGVGKSTLLRALAGLVRLDGGRVELSPPTAAVGLLSQEPDRR
QDETLREYLARRTGVAAAQQALDAATEDLTAGVAGADDGYSLALERWLAIGAADLDVRAEQVIADLGLPAAALDRPTATL
SGGQAARGSLASILLSRFDITLLDEPTNDLDFDGLERLERYVEQMSGALVVVSHDREFLDRSIDAVAEIDQHQHGVTRYA
GGWDAYLEARGLARRQARERFERYADRRAGLVEQVQRQREQSVRGAVRAKRRSPDSDRSARGARIEAATKSAGRVRTLQT
QLDRMERGDEAVVEPRKEWQLRMSIAAAPRSGDVVATLDGAVVERSGFQLGPVDLTVAWADRIVITGRNGGGKSTLLAAL
LGRQPLTAGRHSLGSGVLLGEVDQARTHFRGESTAADVAEAATGSSPADVRTLFAKFGLGPDQMTRPASSLSPGERTRAA
LALLQGAGVNCLVLDEPTNHLDLPAIEQLEQAVEGFEGTLLLVTHDRRLLEAVRVTRRLSVDAGQVTEAPA

Sequences:

>Translated_551_residues
MSATLVATDLTVLRGGAVVLEGVSLTVAPGDRLGVVGPNGVGKSTLLRALAGLVRLDGGRVELSPPTAAVGLLSQEPDRR
QDETLREYLARRTGVAAAQQALDAATEDLTAGVAGADDGYSLALERWLAIGAADLDVRAEQVIADLGLPAAALDRPTATL
SGGQAARGSLASILLSRFDITLLDEPTNDLDFDGLERLERYVEQMSGALVVVSHDREFLDRSIDAVAEIDQHQHGVTRYA
GGWDAYLEARGLARRQARERFERYADRRAGLVEQVQRQREQSVRGAVRAKRRSPDSDRSARGARIEAATKSAGRVRTLQT
QLDRMERGDEAVVEPRKEWQLRMSIAAAPRSGDVVATLDGAVVERSGFQLGPVDLTVAWADRIVITGRNGGGKSTLLAAL
LGRQPLTAGRHSLGSGVLLGEVDQARTHFRGESTAADVAEAATGSSPADVRTLFAKFGLGPDQMTRPASSLSPGERTRAA
LALLQGAGVNCLVLDEPTNHLDLPAIEQLEQAVEGFEGTLLLVTHDRRLLEAVRVTRRLSVDAGQVTEAPA
>Mature_550_residues
SATLVATDLTVLRGGAVVLEGVSLTVAPGDRLGVVGPNGVGKSTLLRALAGLVRLDGGRVELSPPTAAVGLLSQEPDRRQ
DETLREYLARRTGVAAAQQALDAATEDLTAGVAGADDGYSLALERWLAIGAADLDVRAEQVIADLGLPAAALDRPTATLS
GGQAARGSLASILLSRFDITLLDEPTNDLDFDGLERLERYVEQMSGALVVVSHDREFLDRSIDAVAEIDQHQHGVTRYAG
GWDAYLEARGLARRQARERFERYADRRAGLVEQVQRQREQSVRGAVRAKRRSPDSDRSARGARIEAATKSAGRVRTLQTQ
LDRMERGDEAVVEPRKEWQLRMSIAAAPRSGDVVATLDGAVVERSGFQLGPVDLTVAWADRIVITGRNGGGKSTLLAALL
GRQPLTAGRHSLGSGVLLGEVDQARTHFRGESTAADVAEAATGSSPADVRTLFAKFGLGPDQMTRPASSLSPGERTRAAL
ALLQGAGVNCLVLDEPTNHLDLPAIEQLEQAVEGFEGTLLLVTHDRRLLEAVRVTRRLSVDAGQVTEAPA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=558, Percent_Identity=28.8530465949821, Blast_Score=159, Evalue=7e-39,
Organism=Homo sapiens, GI27881506, Length=539, Percent_Identity=27.0871985157699, Blast_Score=149, Evalue=6e-36,
Organism=Homo sapiens, GI10947137, Length=532, Percent_Identity=27.2556390977444, Blast_Score=149, Evalue=6e-36,
Organism=Homo sapiens, GI10947135, Length=530, Percent_Identity=27.3584905660377, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI69354671, Length=530, Percent_Identity=27.3584905660377, Blast_Score=138, Evalue=1e-32,
Organism=Escherichia coli, GI1789751, Length=540, Percent_Identity=30.7407407407407, Blast_Score=203, Evalue=3e-53,
Organism=Escherichia coli, GI2367384, Length=548, Percent_Identity=31.2043795620438, Blast_Score=179, Evalue=4e-46,
Organism=Escherichia coli, GI1787182, Length=535, Percent_Identity=29.5327102803738, Blast_Score=179, Evalue=5e-46,
Organism=Escherichia coli, GI1787041, Length=558, Percent_Identity=27.4193548387097, Blast_Score=178, Evalue=7e-46,
Organism=Escherichia coli, GI48994997, Length=218, Percent_Identity=29.8165137614679, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1790739, Length=230, Percent_Identity=30.4347826086957, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=539, Percent_Identity=27.8293135435993, Blast_Score=158, Evalue=9e-39,
Organism=Caenorhabditis elegans, GI17553372, Length=549, Percent_Identity=27.3224043715847, Blast_Score=148, Evalue=6e-36,
Organism=Caenorhabditis elegans, GI17555318, Length=541, Percent_Identity=25.5083179297597, Blast_Score=143, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6320874, Length=542, Percent_Identity=27.3062730627306, Blast_Score=149, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6321121, Length=546, Percent_Identity=25.8241758241758, Blast_Score=149, Evalue=1e-36,
Organism=Drosophila melanogaster, GI24641342, Length=531, Percent_Identity=29.1902071563089, Blast_Score=188, Evalue=7e-48,
Organism=Drosophila melanogaster, GI24666836, Length=538, Percent_Identity=29.7397769516729, Blast_Score=181, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24642252, Length=533, Percent_Identity=24.390243902439, Blast_Score=136, Evalue=4e-32,
Organism=Drosophila melanogaster, GI18859989, Length=533, Percent_Identity=24.390243902439, Blast_Score=136, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58638; Mature: 58507

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS50893 ABC_TRANSPORTER_2 ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATLVATDLTVLRGGAVVLEGVSLTVAPGDRLGVVGPNGVGKSTLLRALAGLVRLDGGR
CCCEEEEECHHHHCCCEEEEECCEEEECCCCCEECCCCCCCCHHHHHHHHHHHHEECCCE
VELSPPTAAVGLLSQEPDRRQDETLREYLARRTGVAAAQQALDAATEDLTAGVAGADDGY
EEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
SLALERWLAIGAADLDVRAEQVIADLGLPAAALDRPTATLSGGQAARGSLASILLSRFDI
HHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCE
TLLDEPTNDLDFDGLERLERYVEQMSGALVVVSHDREFLDRSIDAVAEIDQHQHGVTRYA
EEECCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHCC
GGWDAYLEARGLARRQARERFERYADRRAGLVEQVQRQREQSVRGAVRAKRRSPDSDRSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RGARIEAATKSAGRVRTLQTQLDRMERGDEAVVEPRKEWQLRMSIAAAPRSGDVVATLDG
CCCEEEHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHEEEEEEEECCCCCCEEEEECC
AVVERSGFQLGPVDLTVAWADRIVITGRNGGGKSTLLAALLGRQPLTAGRHSLGSGVLLG
HHEECCCCEECCEEEEEEEECEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEE
EVDQARTHFRGESTAADVAEAATGSSPADVRTLFAKFGLGPDQMTRPASSLSPGERTRAA
CHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHH
LALLQGAGVNCLVLDEPTNHLDLPAIEQLEQAVEGFEGTLLLVTHDRRLLEAVRVTRRLS
HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC
VDAGQVTEAPA
CCCCCCCCCCC
>Mature Secondary Structure 
SATLVATDLTVLRGGAVVLEGVSLTVAPGDRLGVVGPNGVGKSTLLRALAGLVRLDGGR
CCEEEEECHHHHCCCEEEEECCEEEECCCCCEECCCCCCCCHHHHHHHHHHHHEECCCE
VELSPPTAAVGLLSQEPDRRQDETLREYLARRTGVAAAQQALDAATEDLTAGVAGADDGY
EEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
SLALERWLAIGAADLDVRAEQVIADLGLPAAALDRPTATLSGGQAARGSLASILLSRFDI
HHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCE
TLLDEPTNDLDFDGLERLERYVEQMSGALVVVSHDREFLDRSIDAVAEIDQHQHGVTRYA
EEECCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHCC
GGWDAYLEARGLARRQARERFERYADRRAGLVEQVQRQREQSVRGAVRAKRRSPDSDRSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RGARIEAATKSAGRVRTLQTQLDRMERGDEAVVEPRKEWQLRMSIAAAPRSGDVVATLDG
CCCEEEHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHEEEEEEEECCCCCCEEEEECC
AVVERSGFQLGPVDLTVAWADRIVITGRNGGGKSTLLAALLGRQPLTAGRHSLGSGVLLG
HHEECCCCEECCEEEEEEEECEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEE
EVDQARTHFRGESTAADVAEAATGSSPADVRTLFAKFGLGPDQMTRPASSLSPGERTRAA
CHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHH
LALLQGAGVNCLVLDEPTNHLDLPAIEQLEQAVEGFEGTLLLVTHDRRLLEAVRVTRRLS
HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC
VDAGQVTEAPA
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]