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The map label for this gene is ycdM [C]

Identifier: 158316520

GI number: 158316520

Start: 5679305

End: 5680186

Strand: Reverse

Name: ycdM [C]

Synonym: Franean1_4755

Alternate gene names: 158316520

Gene position: 5680186-5679305 (Counterclockwise)

Preceding gene: 158316521

Following gene: 158316518

Centisome position: 63.24

GC content: 71.2

Gene sequence:

>882_bases
ATGAGGCTCGGGGTCGTCTATCCGCAGATCGAGCTCGAGGGAGATCCGTCGGCGCTCGCCCGGTTCGCCCGGGCGGCCGA
GGGGCTCGGCTACGACCATCTGGTCCTGTACGACCACGTCATCGGCGCCTCGCACGAGCGACGCGACCCGCCGATCCGGG
GCCGGTACGGGGAACGGAGCCCGTTCCACGATCCCCTCACGGCCTTCGCCTACCTGGCCGGCCTGACCGAGCGCATCGAG
TTCGTGAGCGGCGTCCTCATCCTTCCGCTGCGCCAGACCGTCCTCGTCGCCCGGCAGACGGCCGACATCGACCTCATGTC
CGGGGGGCGCCTGCGGCTCGGGGTGGGGGCCGGGTACAACCGGGTCGAATACCACGCGATGGGCGTGGACTTCGCCAGCC
GGGGCCGGCGACTGACCGAGCAGATCTCCTACCTCCGGCGGCTGTGGAGCGAGGAGCTGATCAGCTTCGAGGGCGAGTTC
GACCAGATCGACCGCGCCAACATCGTCCCGCGGCCGACCCGCCGGATTCCGATCTGGTGCGGCGGGTTCGCCGAGGCGGC
GTTCCGCCGGGCCGTGGCCCTGGCCGACGGCTTCGTCTTCGGCTACGGCCTCGATCAGGCCGCGACGGACGGCTGGATCC
GCCTGCGGGAACTGCTGGCGATCGCGGGCAGGCCGCTCGACGGCTTCGGTGCGCAGTTCGTCCTGCACGCACCCGGCCAG
CCCTACACCGATCGGCAGATCACGGACGGGCTGCTGCGGCTGCGGGCGGCAGGCGCCACACACGCCTCGCTGTTCACGAT
GGGGCGCGGGCTCACCGGCGTCGACCGCCACATCGACTACATCGCGGAGATCATGAAGAAGGCCGAGGTCGCGCTGCGCT
GA

Upstream 100 bases:

>100_bases
CCGCGTGCGTTATTTGAACTGATGGTTGTAGAAAAAGAACTGCCGCTGATAGCCTGACCGACGTCCTCGGCGTGACGGGG
AGAGAGACGGGCGGGGTGCG

Downstream 100 bases:

>100_bases
GAGGCCTGGTCCGCTCCCGGGCCGGCCCGGGAGCGGACCATCGCCGTGAGTCAGCCGGGTTCTGCCCGCGGCAGGGCAGG
GATCACCTGTCCCGCGGGGG

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MRLGVVYPQIELEGDPSALARFARAAEGLGYDHLVLYDHVIGASHERRDPPIRGRYGERSPFHDPLTAFAYLAGLTERIE
FVSGVLILPLRQTVLVARQTADIDLMSGGRLRLGVGAGYNRVEYHAMGVDFASRGRRLTEQISYLRRLWSEELISFEGEF
DQIDRANIVPRPTRRIPIWCGGFAEAAFRRAVALADGFVFGYGLDQAATDGWIRLRELLAIAGRPLDGFGAQFVLHAPGQ
PYTDRQITDGLLRLRAAGATHASLFTMGRGLTGVDRHIDYIAEIMKKAEVALR

Sequences:

>Translated_293_residues
MRLGVVYPQIELEGDPSALARFARAAEGLGYDHLVLYDHVIGASHERRDPPIRGRYGERSPFHDPLTAFAYLAGLTERIE
FVSGVLILPLRQTVLVARQTADIDLMSGGRLRLGVGAGYNRVEYHAMGVDFASRGRRLTEQISYLRRLWSEELISFEGEF
DQIDRANIVPRPTRRIPIWCGGFAEAAFRRAVALADGFVFGYGLDQAATDGWIRLRELLAIAGRPLDGFGAQFVLHAPGQ
PYTDRQITDGLLRLRAAGATHASLFTMGRGLTGVDRHIDYIAEIMKKAEVALR
>Mature_293_residues
MRLGVVYPQIELEGDPSALARFARAAEGLGYDHLVLYDHVIGASHERRDPPIRGRYGERSPFHDPLTAFAYLAGLTERIE
FVSGVLILPLRQTVLVARQTADIDLMSGGRLRLGVGAGYNRVEYHAMGVDFASRGRRLTEQISYLRRLWSEELISFEGEF
DQIDRANIVPRPTRRIPIWCGGFAEAAFRRAVALADGFVFGYGLDQAATDGWIRLRELLAIAGRPLDGFGAQFVLHAPGQ
PYTDRQITDGLLRLRAAGATHASLFTMGRGLTGVDRHIDYIAEIMKKAEVALR

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787247, Length=166, Percent_Identity=32.5301204819277, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 32549; Mature: 32549

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGVVYPQIELEGDPSALARFARAAEGLGYDHLVLYDHVIGASHERRDPPIRGRYGERS
CCCEEEECEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PFHDPLTAFAYLAGLTERIEFVSGVLILPLRQTVLVARQTADIDLMSGGRLRLGVGAGYN
CCCCHHHHHHHHHHHHHHHHHHHCHHEEHHHHHHHHHHHCCCEEEECCCEEEEEECCCCC
RVEYHAMGVDFASRGRRLTEQISYLRRLWSEELISFEGEFDQIDRANIVPRPTRRIPIWC
CEEEEEECCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
GGFAEAAFRRAVALADGFVFGYGLDQAATDGWIRLRELLAIAGRPLDGFGAQFVLHAPGQ
CHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
PYTDRQITDGLLRLRAAGATHASLFTMGRGLTGVDRHIDYIAEIMKKAEVALR
CCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLGVVYPQIELEGDPSALARFARAAEGLGYDHLVLYDHVIGASHERRDPPIRGRYGERS
CCCEEEECEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PFHDPLTAFAYLAGLTERIEFVSGVLILPLRQTVLVARQTADIDLMSGGRLRLGVGAGYN
CCCCHHHHHHHHHHHHHHHHHHHCHHEEHHHHHHHHHHHCCCEEEECCCEEEEEECCCCC
RVEYHAMGVDFASRGRRLTEQISYLRRLWSEELISFEGEFDQIDRANIVPRPTRRIPIWC
CEEEEEECCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
GGFAEAAFRRAVALADGFVFGYGLDQAATDGWIRLRELLAIAGRPLDGFGAQFVLHAPGQ
CHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
PYTDRQITDGLLRLRAAGATHASLFTMGRGLTGVDRHIDYIAEIMKKAEVALR
CCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]