Click here to switch to the map view.

The map label for this gene is allR [C]

Identifier: 158316514

GI number: 158316514

Start: 5671431

End: 5672237

Strand: Reverse

Name: allR [C]

Synonym: Franean1_4749

Alternate gene names: 158316514

Gene position: 5672237-5671431 (Counterclockwise)

Preceding gene: 158316515

Following gene: 158316513

Centisome position: 63.15

GC content: 71.75

Gene sequence:

>807_bases
GTGAGAGCCCGCGCCGCGCAGCCGGGCGCTGACGGGGCCGGATACCATCAGCCCATGGCCCGAGCCGACCAGACGGAGAT
CGTCAAAGCGCAGCCTGGGAGCCAGACGCTCGCGCGCGGTCTGCGGGCCCTCATCGCCGTCACGGAATCCGGGACGGGCC
TGACCACCCAGGAAGTCGCGGAACGGCTTTCCATCCATCGGTCGATCGCCTACCGGCTGCTTCAGACATTCGTGGATTTC
CGGTTTCTCACCCGTGCCGACAACGGCGTCTACCGGCCGGGCGCGAGGCTCGTGTCGCTGTCGGACGCTTACCTGCCCGG
CCTGCGCGAGATCGCCCTGCCCTCGATGCGGCGGCTGGCCGAGCGACTCGGCTCCACGATTGCGCTCTTCATCGCCGAGG
GTGAGGAAGCGGTCGCGATCTCGCTGGTCGAACCCACCAACACAACTCATCACCTGTCGTTCCGCGCCGGCATGCGGACC
CCGCTGGACCGGGGGTCAGCGGGCTACGCGCTCGCCTCGGCGCTTCCGCCGCAGCCCGGCGAGCCGGCCGGGGTGAAGCT
CGCGCGCGAGCTCGGCTTCGCGGTCAGCAGCGGTGAGATAGAGGCCGGGGCGCATGGCGTCGCGGCGCTCATCCCGACCC
GGCCCTCCAGCCCGCTCATGTGCCTCCACCTGGTCACCTTCCGCTCCGAGGTGGCGGCCGGCGCCGGCCCGGTGATGGTG
CAGGCCGCCGGCGAGATCGGCCAGCTCTTCGACGGCGGTGACCGGTTGTCGGGTGCCCAGGTGCCCGGGCTCGGCCAGGC
CGGCTAG

Upstream 100 bases:

>100_bases
CGCTGCTGCGCACACCTGCCGGCTGGCGGATCCGGGACCGCCGCAACCGCGTCCTTGACGGCTCACCCGAGTCCCAGGCG
ATCATGCGCCTGGTGCGGGG

Downstream 100 bases:

>100_bases
CCCACCGGCTCCACCAAGCCGTAGCAGGCGCCGGCCCGGCGTCGGCGCTCGGCGGTCGTGCCTTCCCGCGCACCCGCGTT
GCTGGCCTGTCTGCCCGCCC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator IclR Family; Differentiation Regulon; Iclr Family Transcriptional Regulator; Regulatory Proteins IclR; Differentiation Regulon Transcriptional Regulator; Transcriptional Regulator-Like Protein; Transcriptional Regulatory Protein; Regulatory Protein IclR; Transcriptional Regulator TrmB; IclR-Family Transcriptional Regulator

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MRARAAQPGADGAGYHQPMARADQTEIVKAQPGSQTLARGLRALIAVTESGTGLTTQEVAERLSIHRSIAYRLLQTFVDF
RFLTRADNGVYRPGARLVSLSDAYLPGLREIALPSMRRLAERLGSTIALFIAEGEEAVAISLVEPTNTTHHLSFRAGMRT
PLDRGSAGYALASALPPQPGEPAGVKLARELGFAVSSGEIEAGAHGVAALIPTRPSSPLMCLHLVTFRSEVAAGAGPVMV
QAAGEIGQLFDGGDRLSGAQVPGLGQAG

Sequences:

>Translated_268_residues
MRARAAQPGADGAGYHQPMARADQTEIVKAQPGSQTLARGLRALIAVTESGTGLTTQEVAERLSIHRSIAYRLLQTFVDF
RFLTRADNGVYRPGARLVSLSDAYLPGLREIALPSMRRLAERLGSTIALFIAEGEEAVAISLVEPTNTTHHLSFRAGMRT
PLDRGSAGYALASALPPQPGEPAGVKLARELGFAVSSGEIEAGAHGVAALIPTRPSSPLMCLHLVTFRSEVAAGAGPVMV
QAAGEIGQLFDGGDRLSGAQVPGLGQAG
>Mature_268_residues
MRARAAQPGADGAGYHQPMARADQTEIVKAQPGSQTLARGLRALIAVTESGTGLTTQEVAERLSIHRSIAYRLLQTFVDF
RFLTRADNGVYRPGARLVSLSDAYLPGLREIALPSMRRLAERLGSTIALFIAEGEEAVAISLVEPTNTTHHLSFRAGMRT
PLDRGSAGYALASALPPQPGEPAGVKLARELGFAVSSGEIEAGAHGVAALIPTRPSSPLMCLHLVTFRSEVAAGAGPVMV
QAAGEIGQLFDGGDRLSGAQVPGLGQAG

Specific function: Negative Regulator Of Allantoin And Glyoxylate Utilization Operons. [C]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27969; Mature: 27969

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRARAAQPGADGAGYHQPMARADQTEIVKAQPGSQTLARGLRALIAVTESGTGLTTQEVA
CCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHEECCCCCCCHHHHH
ERLSIHRSIAYRLLQTFVDFRFLTRADNGVYRPGARLVSLSDAYLPGLREIALPSMRRLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHCCCHHHHHHHHHHHHH
ERLGSTIALFIAEGEEAVAISLVEPTNTTHHLSFRAGMRTPLDRGSAGYALASALPPQPG
HHHCCEEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEHHHCCCCCCC
EPAGVKLARELGFAVSSGEIEAGAHGVAALIPTRPSSPLMCLHLVTFRSEVAAGAGPVMV
CCHHHHHHHHHCCEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEE
QAAGEIGQLFDGGDRLSGAQVPGLGQAG
EECHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRARAAQPGADGAGYHQPMARADQTEIVKAQPGSQTLARGLRALIAVTESGTGLTTQEVA
CCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHEECCCCCCCHHHHH
ERLSIHRSIAYRLLQTFVDFRFLTRADNGVYRPGARLVSLSDAYLPGLREIALPSMRRLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHCCCHHHHHHHHHHHHH
ERLGSTIALFIAEGEEAVAISLVEPTNTTHHLSFRAGMRTPLDRGSAGYALASALPPQPG
HHHCCEEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEHHHCCCCCCC
EPAGVKLARELGFAVSSGEIEAGAHGVAALIPTRPSSPLMCLHLVTFRSEVAAGAGPVMV
CCHHHHHHHHHCCEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEE
QAAGEIGQLFDGGDRLSGAQVPGLGQAG
EECHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA