Click here to switch to the map view.

The map label for this gene is yjcF [C]

Identifier: 158316410

GI number: 158316410

Start: 5541797

End: 5543047

Strand: Reverse

Name: yjcF [C]

Synonym: Franean1_4644

Alternate gene names: 158316410

Gene position: 5543047-5541797 (Counterclockwise)

Preceding gene: 158316411

Following gene: 158316409

Centisome position: 61.71

GC content: 66.43

Gene sequence:

>1251_bases
ATGGCCGACAGCGTAGTAGCCCGCCGGCGCACCGGGCGCCGCTGGCTGTGGATCGTGGCCGGGGTTGCGGCCATCGGGGC
GGTGTGTGCCGTGGTGGGGATCTGGCATCTGCCAGACCGGATGTACCCGGGTACCTACGCCGAGGTGGGGGAGGCTCGCG
CTGCGTTGCAGGCCGGGCTACTGACTGCTGCCGCCGCTCTGACCGCCGTAGCCGGTGGGCTGATTGCCTTGGACGAGACC
CGGCATGCCAACGCCGAAGTGCGGCGGGCGAACGCGAACACTCATGTCCGTGAGCTGTACGCGACCGCGATTGGTCTTCT
CAGCGCGGATGACATCGATAGCCGCCTTGGTGGGATCTACGCGCTGGAACGGATCGCTCGGGATAGCGCGGCTGACCATC
GTATCGTCGTGGAGGTGCTCTCGGCATTCCTGCGCGAGCACACCCAGCCCGCTTCGGTGCTCGAGCAACGGCCACCTCCC
GGACGACGTTGGAGACATCCTCCGGTCGGAGCGGGTGGTGACGACGAGGGCCGCGTCCGACTGCGGACGGATATGCATGC
CGCGTTCGCGGTCCTGGGGCGGCTCCCTGTCCGGCCCGGAGCGCCCCCCGCTGACCTGACAGGCCTTCATCTGGGTGCGG
CAGACCTGGCTGACGTTCAGCTGACGGGCGCAGATCTCACCGGCGCCCAGCTTGCTGGCGCAAATTTGACCAATGCCTGG
CTAAGTGGAGCTAACCTCACCCGAGCACATCTTGACGGCGCAGTCTTGACCGACGCCCGGCTGGATCGGGCTGATCTCAC
TCGGGCCCGGCTGGGAGGGGCGGACCTCACTCGAGCCTGGTTGCAGCATGCCAACCTCACCCGAGCGCAGCTTGGCGGCG
CTAATGTGACCGACGCTCGCCTGGTTGGCACGGACCTTACCGGAGCCCGACTAGATGGTGCCAACCTCACCCGCACCTGG
CTGGACGGTGCAAATCTCACCGGCGCCCGACTGGAAGGGGCGAAACTCGTCAACGCCTGGTTGGAAAGGGCAAACCTCAT
CGGTGCCCGGTTGATTGGAGCGGATCTTGATGGGGCATGGCTCAATGGAGTGGACCTTTTGGGTGCCTGGCTGAACGGAG
CGGACCTCGCTCGCGTTGTGGGATTGTCGCAGAGCCAGCTGGATGAGGCGCGGGGCAACGACGAGACGCGGATACCAGAC
GGATTGGTACGGCCAGAATCATGGACGTCGGGGGACGGCAGTGGGGGATGA

Upstream 100 bases:

>100_bases
TGGACCGGCGAACTGACTCATCACTACCCGCCACGGCTGTTACATCAACAGCCGGATACTCGACGGCTACGGCTTGCCGC
TGCGGCGTACAAATCTACCT

Downstream 100 bases:

>100_bases
CCCAGGCGGTGCTGGGCGGACGGTCAGTCCAGGTAATAGTCGGAGTACCAGCCCGACTGGGCGTCGGCAGAAAAATCGTC
GAACTCGCCGGCCGCTTCGC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MADSVVARRRTGRRWLWIVAGVAAIGAVCAVVGIWHLPDRMYPGTYAEVGEARAALQAGLLTAAAALTAVAGGLIALDET
RHANAEVRRANANTHVRELYATAIGLLSADDIDSRLGGIYALERIARDSAADHRIVVEVLSAFLREHTQPASVLEQRPPP
GRRWRHPPVGAGGDDEGRVRLRTDMHAAFAVLGRLPVRPGAPPADLTGLHLGAADLADVQLTGADLTGAQLAGANLTNAW
LSGANLTRAHLDGAVLTDARLDRADLTRARLGGADLTRAWLQHANLTRAQLGGANVTDARLVGTDLTGARLDGANLTRTW
LDGANLTGARLEGAKLVNAWLERANLIGARLIGADLDGAWLNGVDLLGAWLNGADLARVVGLSQSQLDEARGNDETRIPD
GLVRPESWTSGDGSGG

Sequences:

>Translated_416_residues
MADSVVARRRTGRRWLWIVAGVAAIGAVCAVVGIWHLPDRMYPGTYAEVGEARAALQAGLLTAAAALTAVAGGLIALDET
RHANAEVRRANANTHVRELYATAIGLLSADDIDSRLGGIYALERIARDSAADHRIVVEVLSAFLREHTQPASVLEQRPPP
GRRWRHPPVGAGGDDEGRVRLRTDMHAAFAVLGRLPVRPGAPPADLTGLHLGAADLADVQLTGADLTGAQLAGANLTNAW
LSGANLTRAHLDGAVLTDARLDRADLTRARLGGADLTRAWLQHANLTRAQLGGANVTDARLVGTDLTGARLDGANLTRTW
LDGANLTGARLEGAKLVNAWLERANLIGARLIGADLDGAWLNGVDLLGAWLNGADLARVVGLSQSQLDEARGNDETRIPD
GLVRPESWTSGDGSGG
>Mature_415_residues
ADSVVARRRTGRRWLWIVAGVAAIGAVCAVVGIWHLPDRMYPGTYAEVGEARAALQAGLLTAAAALTAVAGGLIALDETR
HANAEVRRANANTHVRELYATAIGLLSADDIDSRLGGIYALERIARDSAADHRIVVEVLSAFLREHTQPASVLEQRPPPG
RRWRHPPVGAGGDDEGRVRLRTDMHAAFAVLGRLPVRPGAPPADLTGLHLGAADLADVQLTGADLTGAQLAGANLTNAWL
SGANLTRAHLDGAVLTDARLDRADLTRARLGGADLTRAWLQHANLTRAQLGGANVTDARLVGTDLTGARLDGANLTRTWL
DGANLTGARLEGAKLVNAWLERANLIGARLIGADLDGAWLNGVDLLGAWLNGADLARVVGLSQSQLDEARGNDETRIPDG
LVRPESWTSGDGSGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=188, Percent_Identity=31.3829787234043, Blast_Score=76, Evalue=6e-14,
Organism=Drosophila melanogaster, GI221377802, Length=161, Percent_Identity=36.0248447204969, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 43698; Mature: 43567

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADSVVARRRTGRRWLWIVAGVAAIGAVCAVVGIWHLPDRMYPGTYAEVGEARAALQAGL
CCCCHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LTAAAALTAVAGGLIALDETRHANAEVRRANANTHVRELYATAIGLLSADDIDSRLGGIY
HHHHHHHHHHHCCEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
ALERIARDSAADHRIVVEVLSAFLREHTQPASVLEQRPPPGRRWRHPPVGAGGDDEGRVR
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
LRTDMHAAFAVLGRLPVRPGAPPADLTGLHLGAADLADVQLTGADLTGAQLAGANLTNAW
EEHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHH
LSGANLTRAHLDGAVLTDARLDRADLTRARLGGADLTRAWLQHANLTRAQLGGANVTDAR
HCCCCCCHHHCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCCCCCCCE
LVGTDLTGARLDGANLTRTWLDGANLTGARLEGAKLVNAWLERANLIGARLIGADLDGAW
EECCCCCCCEECCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCH
LNGVDLLGAWLNGADLARVVGLSQSQLDEARGNDETRIPDGLVRPESWTSGDGSGG
HCCHHHHHHHHCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADSVVARRRTGRRWLWIVAGVAAIGAVCAVVGIWHLPDRMYPGTYAEVGEARAALQAGL
CCCHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LTAAAALTAVAGGLIALDETRHANAEVRRANANTHVRELYATAIGLLSADDIDSRLGGIY
HHHHHHHHHHHCCEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
ALERIARDSAADHRIVVEVLSAFLREHTQPASVLEQRPPPGRRWRHPPVGAGGDDEGRVR
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
LRTDMHAAFAVLGRLPVRPGAPPADLTGLHLGAADLADVQLTGADLTGAQLAGANLTNAW
EEHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHH
LSGANLTRAHLDGAVLTDARLDRADLTRARLGGADLTRAWLQHANLTRAQLGGANVTDAR
HCCCCCCHHHCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCCCCCCCE
LVGTDLTGARLDGANLTRTWLDGANLTGARLEGAKLVNAWLERANLIGARLIGADLDGAW
EECCCCCCCEECCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCH
LNGVDLLGAWLNGADLARVVGLSQSQLDEARGNDETRIPDGLVRPESWTSGDGSGG
HCCHHHHHHHHCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA