| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316351
Identifier: 158316351
GI number: 158316351
Start: 5461982
End: 5463058
Strand: Reverse
Name: 158316351
Synonym: Franean1_4580
Alternate gene names: NA
Gene position: 5463058-5461982 (Counterclockwise)
Preceding gene: 158316352
Following gene: 158316350
Centisome position: 60.82
GC content: 74.47
Gene sequence:
>1077_bases ATGCCGTGGCGCGGAGCGGACGCCGCGCGGGCGGCCGAGCAGGCCGGCATGACGGCGTTCTGCAGCGGCGAGTTCGTGGA CCACGAGGCCTACGCGACGCTGACCGAGATGGTGCTCGGCACCGAGCGGGCGCTGGTCGGCCCGGCCATCGCGTACGCGT TCGCGCGCACGCCGTATGCCCATGCGGCGGGGATCCGCAGCGCGTGGGCGCATGCAGCCGGGCGGGTGTTCCTCGGTCTC GGCTCGGGGGCCTACCGCATCAACCGGGACTGGTTCGGCGTGGAGGCCGACCGCCCGGTGGCGCGGATGGCGGACCTGGT CGGGGCGATCCGGGCGTGGCTGCACGCCGAGAACGGCCAGCCGGTGACCTACGACGGCGAGTTCTACCGGGTCAACGCGT CGGTCGGCGCCCCCGTCCTCGGCCGGATCGACGCCCCGATCCTGCTCGCCGGGTTCAACCGGCTGATGGCGGCGACCGCC GCGCGGGTGGCCGACGGGGTCGTCGGGCACGGGCTGTTCACCCGTACCTGGTGGGACGACGTGGTGCGGCCGGCGATGGC GCGGGGCGCGGCCGACGCCGCACGGGACACTCCGGCCCTCGAACACGGCTGGGTGATCACCGCGATCGACGACGACGATC CCGGGCGCGCGGTCACCGACGCCCGGCGCATGATCGCGTTCTACCTCACCGTCAAGACCTACGACCCCTACGTCGCCCAT CACGGCTGGACCCGGCAGGTCGAGGCGATCCGCGAGGCGTTCGCGCGCCGCGACAGCGACGCCATGGCCGCGGCGGTCAC GGACGACATGGTCGAGCAGATCGCGATCTGTGGCACCACGTCCGACGGTCGCGCGGCACTCGCCCGTCGCGGTGACTCGC TGCCACGCGACGTCGCCTACCTCGCGCCACCGTCGTACCTGGTCAGCGGGCGTCGCGGCCGGCGCTACGCACTCGCGAGC CTCGGCCTGCTCGACGGCGCCACGAGCCCCCCCGAGCCCTCGCCGCTCGAGCCCTCGCCGCTCGAGTCGTCGGCGGTCGC ATCGTCGGCGGTCGCATCGTCGGCGGCACAGCGGTGA
Upstream 100 bases:
>100_bases GGACGATTGTCGCCGAGCGGGCGCTGGGACTGCCGAGGGACAAGCGTTGACCACGGGCGAGATCGGCGTCGCGGTCGAAC CGGAGGGTCGGCGGTACGGC
Downstream 100 bases:
>100_bases GTGCGCACCCGCGGGTGTCGGTCAGCGGGCTGTGCTTCCCGGAGCTGTCCGCGCTCGACACCCTGGAGGCCGTCGCGGCG CTCGGGGTCACGAACGCCTC
Product: putative N5, N10-methylenetetrahydromethanopterin reductase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MPWRGADAARAAEQAGMTAFCSGEFVDHEAYATLTEMVLGTERALVGPAIAYAFARTPYAHAAGIRSAWAHAAGRVFLGL GSGAYRINRDWFGVEADRPVARMADLVGAIRAWLHAENGQPVTYDGEFYRVNASVGAPVLGRIDAPILLAGFNRLMAATA ARVADGVVGHGLFTRTWWDDVVRPAMARGAADAARDTPALEHGWVITAIDDDDPGRAVTDARRMIAFYLTVKTYDPYVAH HGWTRQVEAIREAFARRDSDAMAAAVTDDMVEQIAICGTTSDGRAALARRGDSLPRDVAYLAPPSYLVSGRRGRRYALAS LGLLDGATSPPEPSPLEPSPLESSAVASSAVASSAAQR
Sequences:
>Translated_358_residues MPWRGADAARAAEQAGMTAFCSGEFVDHEAYATLTEMVLGTERALVGPAIAYAFARTPYAHAAGIRSAWAHAAGRVFLGL GSGAYRINRDWFGVEADRPVARMADLVGAIRAWLHAENGQPVTYDGEFYRVNASVGAPVLGRIDAPILLAGFNRLMAATA ARVADGVVGHGLFTRTWWDDVVRPAMARGAADAARDTPALEHGWVITAIDDDDPGRAVTDARRMIAFYLTVKTYDPYVAH HGWTRQVEAIREAFARRDSDAMAAAVTDDMVEQIAICGTTSDGRAALARRGDSLPRDVAYLAPPSYLVSGRRGRRYALAS LGLLDGATSPPEPSPLEPSPLESSAVASSAVASSAAQR >Mature_357_residues PWRGADAARAAEQAGMTAFCSGEFVDHEAYATLTEMVLGTERALVGPAIAYAFARTPYAHAAGIRSAWAHAAGRVFLGLG SGAYRINRDWFGVEADRPVARMADLVGAIRAWLHAENGQPVTYDGEFYRVNASVGAPVLGRIDAPILLAGFNRLMAATAA RVADGVVGHGLFTRTWWDDVVRPAMARGAADAARDTPALEHGWVITAIDDDDPGRAVTDARRMIAFYLTVKTYDPYVAHH GWTRQVEAIREAFARRDSDAMAAAVTDDMVEQIAICGTTSDGRAALARRGDSLPRDVAYLAPPSYLVSGRRGRRYALASL GLLDGATSPPEPSPLEPSPLESSAVASSAVASSAAQR
Specific function: Unknown
COG id: COG2141
COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019919 - InterPro: IPR011251 - InterPro: IPR016048 [H]
Pfam domain/function: PF00296 Bac_luciferase [H]
EC number: NA
Molecular weight: Translated: 38126; Mature: 37995
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPWRGADAARAAEQAGMTAFCSGEFVDHEAYATLTEMVLGTERALVGPAIAYAFARTPYA CCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH HAAGIRSAWAHAAGRVFLGLGSGAYRINRDWFGVEADRPVARMADLVGAIRAWLHAENGQ HHHHHHHHHHHHCCEEEEEECCCEEEECCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCC PVTYDGEFYRVNASVGAPVLGRIDAPILLAGFNRLMAATAARVADGVVGHGLFTRTWWDD EEEECCCEEEEECCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHH VVRPAMARGAADAARDTPALEHGWVITAIDDDDPGRAVTDARRMIAFYLTVKTYDPYVAH HHHHHHHHCCHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHEEEEEEEEECCCCHHHC HGWTRQVEAIREAFARRDSDAMAAAVTDDMVEQIAICGTTSDGRAALARRGDSLPRDVAY CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHH LAPPSYLVSGRRGRRYALASLGLLDGATSPPEPSPLEPSPLESSAVASSAVASSAAQR HCCCHHHHCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure PWRGADAARAAEQAGMTAFCSGEFVDHEAYATLTEMVLGTERALVGPAIAYAFARTPYA CCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH HAAGIRSAWAHAAGRVFLGLGSGAYRINRDWFGVEADRPVARMADLVGAIRAWLHAENGQ HHHHHHHHHHHHCCEEEEEECCCEEEECCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCC PVTYDGEFYRVNASVGAPVLGRIDAPILLAGFNRLMAATAARVADGVVGHGLFTRTWWDD EEEECCCEEEEECCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHH VVRPAMARGAADAARDTPALEHGWVITAIDDDDPGRAVTDARRMIAFYLTVKTYDPYVAH HHHHHHHHCCHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHEEEEEEEEECCCCHHHC HGWTRQVEAIREAFARRDSDAMAAAVTDDMVEQIAICGTTSDGRAALARRGDSLPRDVAY CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHH LAPPSYLVSGRRGRRYALASLGLLDGATSPPEPSPLEPSPLESSAVASSAVASSAAQR HCCCHHHHCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]