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The map label for this gene is yfdE [H]

Identifier: 158316343

GI number: 158316343

Start: 5454842

End: 5455981

Strand: Reverse

Name: yfdE [H]

Synonym: Franean1_4572

Alternate gene names: 158316343

Gene position: 5455981-5454842 (Counterclockwise)

Preceding gene: 158316344

Following gene: 158316342

Centisome position: 60.74

GC content: 75.18

Gene sequence:

>1140_bases
ATGACGCAGGCGCTGGGCGACGTCACGGTCGTGTGCCTCAGCGCGCTCGGGCCGGTCCCGTTCGCGACCATGCTGCTCGC
CGACCTGGGCGCCCGGGTGATCCGGATCGACCGGGCCGACCGGCCCGGTGGCGTCACCGGCCTGCGGCTCGAGGACGATC
CCCGTACCCGGGGGCAGCGCGGCATCGGGGTCGACGTCCGGCATCCGTCGGGCCGGTCCGTGGTGCTGCGGCTGGTCGAG
ACGGCGGACGTGTTCCTGGAGGGAATGCGCCCCGGTGTCGCCGAGCGGCTCGGGCTCGGCCCGGCCGAGCTGCTGGCCGT
CAACCCCCGCCTGGTGTACGGGCGGGCGACGGGGTGGGGGCAGTCGGGCCCGCGCGCTCAACAGGCCGGGCACGACATCA
ATTACGCCGGGCTCGCCGGCGGCCTGTACCCGACCGGACCGGCCGAGCTGCCGCCGCTGCCGCCGCTCAATCTGCTGGCC
GACTTCGCCGGCGGCGGTTCCTACCTCGCCCTCGGCGTGCTCGCGGCCCTGCACCACCGCACGGGGACCGGACGCGGCCA
GGTGGTCGACGCGGCCATGGTCGACGGCGTCGCCAACCTCACGGCGATGATGCACGGGATGCTCGCGGCCGGCCTGTGGA
GCGATCGCCGCGGCGACAACCTGCTCGACGGCGGCGCCCCGTTCTACCGCACCTACCGCACCGCCGACGACGGCTTCGTC
GCCGTGGGCGCGCTGGAGCCGCAGTTCTACCGGCTGCTGCTGGAGAACCTCGGGCTCGACCCCGCGCGGTGGCCGCAGCA
CGACCGGTCGACCTGGCCCGAGCAGGAGCGCGTCCTGGGGGATCTGTTCGCCGCGCGCACCCGGGACGAGTGGACGAAGC
TGTTCGACGGCGTCGACGCCTGTGTGACGCCCGTGCTGAGCCTGGCGGAGGCGGCGGCCTCGGCCGAGCTGCGCGAGCGC
GCGACCTTCGTCGAGTGGGACGGCGTCGCGCAGCCGGCGCCGGCACCCCGGCTGTCGGCGTCCCCGGCCGTCGAACGTCC
CCGGTCGGGCTGGTGCAGCCATTCGGCCGAGATTCTGACCGAGCTCGGGCTGACCGAGACGGAGCGGGCGGCGCTGCGCG
ACGCGGGTGTGATCGCTTAG

Upstream 100 bases:

>100_bases
ACCAGCAGCGGGCGCTGTTCGAACCGGTGTTCGCCTCCAGCGACGCGGCCGAGGGCGTGGCCGCCTTCCGGGAGCGGCGC
GCTCCGGTCTGGCGCGACGC

Downstream 100 bases:

>100_bases
AGCTCCGGCGGCGGTGGCGCCGCCCGCGACCGTTCCAGCCGCGGACCCGCCGGCCGCCGCACGACGACGATCGAAGGAGA
TCCATGCCCGACGAGACGCT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MTQALGDVTVVCLSALGPVPFATMLLADLGARVIRIDRADRPGGVTGLRLEDDPRTRGQRGIGVDVRHPSGRSVVLRLVE
TADVFLEGMRPGVAERLGLGPAELLAVNPRLVYGRATGWGQSGPRAQQAGHDINYAGLAGGLYPTGPAELPPLPPLNLLA
DFAGGGSYLALGVLAALHHRTGTGRGQVVDAAMVDGVANLTAMMHGMLAAGLWSDRRGDNLLDGGAPFYRTYRTADDGFV
AVGALEPQFYRLLLENLGLDPARWPQHDRSTWPEQERVLGDLFAARTRDEWTKLFDGVDACVTPVLSLAEAAASAELRER
ATFVEWDGVAQPAPAPRLSASPAVERPRSGWCSHSAEILTELGLTETERAALRDAGVIA

Sequences:

>Translated_379_residues
MTQALGDVTVVCLSALGPVPFATMLLADLGARVIRIDRADRPGGVTGLRLEDDPRTRGQRGIGVDVRHPSGRSVVLRLVE
TADVFLEGMRPGVAERLGLGPAELLAVNPRLVYGRATGWGQSGPRAQQAGHDINYAGLAGGLYPTGPAELPPLPPLNLLA
DFAGGGSYLALGVLAALHHRTGTGRGQVVDAAMVDGVANLTAMMHGMLAAGLWSDRRGDNLLDGGAPFYRTYRTADDGFV
AVGALEPQFYRLLLENLGLDPARWPQHDRSTWPEQERVLGDLFAARTRDEWTKLFDGVDACVTPVLSLAEAAASAELRER
ATFVEWDGVAQPAPAPRLSASPAVERPRSGWCSHSAEILTELGLTETERAALRDAGVIA
>Mature_378_residues
TQALGDVTVVCLSALGPVPFATMLLADLGARVIRIDRADRPGGVTGLRLEDDPRTRGQRGIGVDVRHPSGRSVVLRLVET
ADVFLEGMRPGVAERLGLGPAELLAVNPRLVYGRATGWGQSGPRAQQAGHDINYAGLAGGLYPTGPAELPPLPPLNLLAD
FAGGGSYLALGVLAALHHRTGTGRGQVVDAAMVDGVANLTAMMHGMLAAGLWSDRRGDNLLDGGAPFYRTYRTADDGFVA
VGALEPQFYRLLLENLGLDPARWPQHDRSTWPEQERVLGDLFAARTRDEWTKLFDGVDACVTPVLSLAEAAASAELRERA
TFVEWDGVAQPAPAPRLSASPAVERPRSGWCSHSAEILTELGLTETERAALRDAGVIA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=383, Percent_Identity=46.7362924281984, Blast_Score=321, Evalue=8e-88,
Organism=Homo sapiens, GI266456254, Length=383, Percent_Identity=46.7362924281984, Blast_Score=320, Evalue=9e-88,
Organism=Homo sapiens, GI266458393, Length=255, Percent_Identity=52.156862745098, Blast_Score=244, Evalue=8e-65,
Organism=Homo sapiens, GI266458397, Length=252, Percent_Identity=51.984126984127, Blast_Score=240, Evalue=1e-63,
Organism=Homo sapiens, GI300863128, Length=391, Percent_Identity=27.8772378516624, Blast_Score=132, Evalue=6e-31,
Organism=Homo sapiens, GI300863124, Length=321, Percent_Identity=27.7258566978193, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458395, Length=138, Percent_Identity=47.8260869565217, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI42822893, Length=138, Percent_Identity=48.5507246376812, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI300863126, Length=407, Percent_Identity=25.5528255528256, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI13376042, Length=326, Percent_Identity=24.5398773006135, Blast_Score=83, Evalue=5e-16,
Organism=Escherichia coli, GI87082093, Length=360, Percent_Identity=28.6111111111111, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1788717, Length=440, Percent_Identity=26.3636363636364, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1786222, Length=383, Percent_Identity=24.0208877284595, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=343, Percent_Identity=37.9008746355685, Blast_Score=219, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI32564160, Length=345, Percent_Identity=37.3913043478261, Blast_Score=217, Evalue=9e-57,
Organism=Drosophila melanogaster, GI24585488, Length=377, Percent_Identity=40.3183023872679, Blast_Score=261, Evalue=6e-70,
Organism=Drosophila melanogaster, GI24648431, Length=331, Percent_Identity=30.8157099697885, Blast_Score=126, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40254; Mature: 40123

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQALGDVTVVCLSALGPVPFATMLLADLGARVIRIDRADRPGGVTGLRLEDDPRTRGQR
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEECCCCCCCCCC
GIGVDVRHPSGRSVVLRLVETADVFLEGMRPGVAERLGLGPAELLAVNPRLVYGRATGWG
CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHEEECCEEEEECCCCCC
QSGPRAQQAGHDINYAGLAGGLYPTGPAELPPLPPLNLLADFAGGGSYLALGVLAALHHR
CCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHC
TGTGRGQVVDAAMVDGVANLTAMMHGMLAAGLWSDRRGDNLLDGGAPFYRTYRTADDGFV
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEECCCCCEE
AVGALEPQFYRLLLENLGLDPARWPQHDRSTWPEQERVLGDLFAARTRDEWTKLFDGVDA
EEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CVTPVLSLAEAAASAELRERATFVEWDGVAQPAPAPRLSASPAVERPRSGWCSHSAEILT
HHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
ELGLTETERAALRDAGVIA
HHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
TQALGDVTVVCLSALGPVPFATMLLADLGARVIRIDRADRPGGVTGLRLEDDPRTRGQR
CCCHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEECCCCCCCCCC
GIGVDVRHPSGRSVVLRLVETADVFLEGMRPGVAERLGLGPAELLAVNPRLVYGRATGWG
CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHEEECCEEEEECCCCCC
QSGPRAQQAGHDINYAGLAGGLYPTGPAELPPLPPLNLLADFAGGGSYLALGVLAALHHR
CCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHC
TGTGRGQVVDAAMVDGVANLTAMMHGMLAAGLWSDRRGDNLLDGGAPFYRTYRTADDGFV
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEECCCCCEE
AVGALEPQFYRLLLENLGLDPARWPQHDRSTWPEQERVLGDLFAARTRDEWTKLFDGVDA
EEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CVTPVLSLAEAAASAELRERATFVEWDGVAQPAPAPRLSASPAVERPRSGWCSHSAEILT
HHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
ELGLTETERAALRDAGVIA
HHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]