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The map label for this gene is yfdE [H]

Identifier: 158316294

GI number: 158316294

Start: 5393603

End: 5394772

Strand: Reverse

Name: yfdE [H]

Synonym: Franean1_4521

Alternate gene names: 158316294

Gene position: 5394772-5393603 (Counterclockwise)

Preceding gene: 158316295

Following gene: 158316290

Centisome position: 60.06

GC content: 72.39

Gene sequence:

>1170_bases
ATGAGCCTGCCGGTTGGCTCCGGCCCGCTCGCAGGGACGCGCGTCCTTGAGATCGCGGGCCGGGGCCCCGGCCCCTTCGC
GGGCATGCTCCTGGCGGACATGGGAGCGGAGATCCTGCGCATCGACCGGCCGGATCCCCCCGCCCGTCCGCAGGCGCCCG
ACCACCGCCTGGAGCTGTACAACCGCGGACGACGCTCCGTGGTCGTCGATCTCAAGCACGGAGCCGGCCCCGAGGTGGTG
CTGCGTCTGGTCGAACGGGCGGACGCGATCTACGAGGGGTACCGGCCCGGCGTCGCCGAACGTCTCGGGATCGGCCCGGA
CGCGTGCCTGCAGCGAAACCCACGGATCGTCTACGGGCGCGGCACGGGCTGGGGGCAGACCGGGCCCCTGGCGGACAAGG
CCGGCCACGACATCAACTACATCGCGCTCGCCGGGGCGCTCGACCCCCTCGGCTACGCGGGCGGGCCGCCCGCCATCCCG
CTCAACCTGATCGGTGACTACGCGGGCGGAGGCATGATGCTCGCCTTCGGCATCGTGTGCGCGCTGCTGGAGGCGCGCGG
CTCGGGCCGGGGCCAGGTGGTCGACGCGGCGATGGTGGACGGGGCGTCGCTGCTCATGACCCTGTACCACGGACGTCGGA
TGATGGGCACGTGGAGCGACGAACGCGGCACGAACTACGTGGACTCCGGCGCGCCGTTCTACAACGTCTACGAGACGAGC
GACCACCGGTACGTCGCGATCGGCGCGATCGAGCCGAAGTTCCAGCGGGTGCTGTTCGACGCCATCGGCGTGGACCTCGA
CGGCATCACCATGCCGGTGTCGACGATCGACCGTACCGACTGGGCCGAACTGCGGCGCCGGCTCGCGGCGGTCTTCGTGA
CCCGCACCCGCGACGAGTGGACCAAGCTGCTCGCCGACGTCGACGGCTGCTACTCGCCCGTGCTGTCCCTCGGGGAGGTG
TCCGCACATCCCCATCACCAGGCGCGTGCCGGCTTCCCGGAACTCGACGGAATCCCCCATCCCGCGCCGGCGCCCCGGTT
CGGGCGGACCCCGGCGGCCATCCGGACGGCCCCGCCCAGGCCCGGGGAGCACACCCGGGAAGCCCTGGCGGACTGGGGCT
TCACCGACGACGAACTGCAGACGCTGCACCGGGACGGCGCAATCCGGTAG

Upstream 100 bases:

>100_bases
TTCTTGTGGTGGTCTCCACCATCATCAACGCGCTCGTGACGCTGCTGGAGAAGCGCCTGCTGCGGTGGAAGCCGCGCAAC
CTGACCAACGTCGGAGCACC

Downstream 100 bases:

>100_bases
CGGCGGCGCGATCGCGGCGATGGCGACCCGGACCAACGGCGATCCGCTTCCCCACGGCGATCCGCCCGCGACGGTGCCCA
CCGGCAGTTGCCGGTGGGCA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MSLPVGSGPLAGTRVLEIAGRGPGPFAGMLLADMGAEILRIDRPDPPARPQAPDHRLELYNRGRRSVVVDLKHGAGPEVV
LRLVERADAIYEGYRPGVAERLGIGPDACLQRNPRIVYGRGTGWGQTGPLADKAGHDINYIALAGALDPLGYAGGPPAIP
LNLIGDYAGGGMMLAFGIVCALLEARGSGRGQVVDAAMVDGASLLMTLYHGRRMMGTWSDERGTNYVDSGAPFYNVYETS
DHRYVAIGAIEPKFQRVLFDAIGVDLDGITMPVSTIDRTDWAELRRRLAAVFVTRTRDEWTKLLADVDGCYSPVLSLGEV
SAHPHHQARAGFPELDGIPHPAPAPRFGRTPAAIRTAPPRPGEHTREALADWGFTDDELQTLHRDGAIR

Sequences:

>Translated_389_residues
MSLPVGSGPLAGTRVLEIAGRGPGPFAGMLLADMGAEILRIDRPDPPARPQAPDHRLELYNRGRRSVVVDLKHGAGPEVV
LRLVERADAIYEGYRPGVAERLGIGPDACLQRNPRIVYGRGTGWGQTGPLADKAGHDINYIALAGALDPLGYAGGPPAIP
LNLIGDYAGGGMMLAFGIVCALLEARGSGRGQVVDAAMVDGASLLMTLYHGRRMMGTWSDERGTNYVDSGAPFYNVYETS
DHRYVAIGAIEPKFQRVLFDAIGVDLDGITMPVSTIDRTDWAELRRRLAAVFVTRTRDEWTKLLADVDGCYSPVLSLGEV
SAHPHHQARAGFPELDGIPHPAPAPRFGRTPAAIRTAPPRPGEHTREALADWGFTDDELQTLHRDGAIR
>Mature_388_residues
SLPVGSGPLAGTRVLEIAGRGPGPFAGMLLADMGAEILRIDRPDPPARPQAPDHRLELYNRGRRSVVVDLKHGAGPEVVL
RLVERADAIYEGYRPGVAERLGIGPDACLQRNPRIVYGRGTGWGQTGPLADKAGHDINYIALAGALDPLGYAGGPPAIPL
NLIGDYAGGGMMLAFGIVCALLEARGSGRGQVVDAAMVDGASLLMTLYHGRRMMGTWSDERGTNYVDSGAPFYNVYETSD
HRYVAIGAIEPKFQRVLFDAIGVDLDGITMPVSTIDRTDWAELRRRLAAVFVTRTRDEWTKLLADVDGCYSPVLSLGEVS
AHPHHQARAGFPELDGIPHPAPAPRFGRTPAAIRTAPPRPGEHTREALADWGFTDDELQTLHRDGAIR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=389, Percent_Identity=39.8457583547558, Blast_Score=303, Evalue=1e-82,
Organism=Homo sapiens, GI266456254, Length=389, Percent_Identity=39.8457583547558, Blast_Score=303, Evalue=2e-82,
Organism=Homo sapiens, GI266458393, Length=254, Percent_Identity=43.7007874015748, Blast_Score=230, Evalue=1e-60,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=43.8247011952191, Blast_Score=227, Evalue=1e-59,
Organism=Homo sapiens, GI300863128, Length=386, Percent_Identity=25.6476683937824, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI266458395, Length=141, Percent_Identity=42.5531914893617, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI42822893, Length=141, Percent_Identity=42.5531914893617, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI300863124, Length=412, Percent_Identity=24.7572815533981, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI300863126, Length=385, Percent_Identity=24.4155844155844, Blast_Score=99, Evalue=7e-21,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=27.6353276353276, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1788717, Length=419, Percent_Identity=27.2076372315036, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786222, Length=398, Percent_Identity=25.3768844221106, Blast_Score=96, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=359, Percent_Identity=32.3119777158774, Blast_Score=196, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI32564160, Length=341, Percent_Identity=33.1378299120235, Blast_Score=195, Evalue=3e-50,
Organism=Drosophila melanogaster, GI24585488, Length=349, Percent_Identity=41.5472779369628, Blast_Score=278, Evalue=3e-75,
Organism=Drosophila melanogaster, GI24648431, Length=412, Percent_Identity=28.3980582524272, Blast_Score=127, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41842; Mature: 41711

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPVGSGPLAGTRVLEIAGRGPGPFAGMLLADMGAEILRIDRPDPPARPQAPDHRLELY
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHH
NRGRRSVVVDLKHGAGPEVVLRLVERADAIYEGYRPGVAERLGIGPDACLQRNPRIVYGR
HCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHCCCCEEEEEC
GTGWGQTGPLADKAGHDINYIALAGALDPLGYAGGPPAIPLNLIGDYAGGGMMLAFGIVC
CCCCCCCCCCCHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHH
ALLEARGSGRGQVVDAAMVDGASLLMTLYHGRRMMGTWSDERGTNYVDSGAPFYNVYETS
HHHHHCCCCCCEEEEHHHHCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEEEEECC
DHRYVAIGAIEPKFQRVLFDAIGVDLDGITMPVSTIDRTDWAELRRRLAAVFVTRTRDEW
CCCEEEEECCCHHHHHHHHHHHCCCCCCCEECHHHCCCCCHHHHHHHHHHHHHHCCHHHH
TKLLADVDGCYSPVLSLGEVSAHPHHQARAGFPELDGIPHPAPAPRFGRTPAAIRTAPPR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
PGEHTREALADWGFTDDELQTLHRDGAIR
CCHHHHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SLPVGSGPLAGTRVLEIAGRGPGPFAGMLLADMGAEILRIDRPDPPARPQAPDHRLELY
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHH
NRGRRSVVVDLKHGAGPEVVLRLVERADAIYEGYRPGVAERLGIGPDACLQRNPRIVYGR
HCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHCCCCEEEEEC
GTGWGQTGPLADKAGHDINYIALAGALDPLGYAGGPPAIPLNLIGDYAGGGMMLAFGIVC
CCCCCCCCCCCHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHH
ALLEARGSGRGQVVDAAMVDGASLLMTLYHGRRMMGTWSDERGTNYVDSGAPFYNVYETS
HHHHHCCCCCCEEEEHHHHCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEEEEECC
DHRYVAIGAIEPKFQRVLFDAIGVDLDGITMPVSTIDRTDWAELRRRLAAVFVTRTRDEW
CCCEEEEECCCHHHHHHHHHHHCCCCCCCEECHHHCCCCCHHHHHHHHHHHHHHCCHHHH
TKLLADVDGCYSPVLSLGEVSAHPHHQARAGFPELDGIPHPAPAPRFGRTPAAIRTAPPR
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
PGEHTREALADWGFTDDELQTLHRDGAIR
CCHHHHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]