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The map label for this gene is frc [H]

Identifier: 158316290

GI number: 158316290

Start: 5389656

End: 5390843

Strand: Reverse

Name: frc [H]

Synonym: Franean1_4517

Alternate gene names: 158316290

Gene position: 5390843-5389656 (Counterclockwise)

Preceding gene: 158316294

Following gene: 158316289

Centisome position: 60.02

GC content: 69.7

Gene sequence:

>1188_bases
ATGACCGCGCTCGAAGGCGTGAAGGTGATTTGTGTGGGGCAGTTCTACTTTGCCCCTTATTGCTCGATGCTGATGGCGCG
CCTCGGCGCGGACGTCATCAAGGTCGAGGCGCCGGAGGGGGACCCGTACCGCCGGCTGCCCACCGTCGACCACGACGGCT
TCCCGATCCAGTTCCGGTTCCTCAACTCCGGCAAGCGCGCCATCCGGCTGGACCTCAAACAACCTGCCGGGCAGGAGATA
CTCCGTAACCTCGTCCGGACCGCCGACGTGCTCGTCCAGAACCTGTCGCCGGGGGCGATGGACCGGCGCGGTCTCGGCTA
CAAGCAGCTCAGCGCGATCAACCCGGGCCTGATCATGGCGTCGGGCACAGGCTTCGGGTCGTTCGGGCCCTATGCCGGCG
AGCCGGCGATGGATCTCACGATCCAGGCGCGCAGCGCGATCATGAGCACCACGGGGTTCGCCGACGGGGCGCCGGTCCGC
ACCGGCCCGTCGGTCGTCGACTTCGTCGCGGGCACGCACATGCTCGGGGGTGTGCTCGCCGCGCTGTTCCAACGCACCCG
CACCGGCCGCGGTCAGCATGTCGAGGTGGCCCTGCAGGACGCCATCGTCCCGTCGCTGACGTCCAACATCGCCGGGCTGC
TGAGCAGCGCGACCGAGAGCCACGAACGCACGGGCAACCGGCACGGCGGGCTGGCCGTCGCCCCGTACAACGCCTACCGC
ACCAACGACGGGTGGATCGCCGTACTGTGCCCGACCGACGCGCACTGGCGGCGGCTGTGTGAGCTGATGGGGGATCCCGC
CACCGACGACCCGCGCTTCGCGGACATGAGCAGCCGGTGCGCCCACATAGACGACGTCGACGCGGTCGTCGAGAACTGGA
CGAGGGCCCGCCCCAAGGACCTGCTGGCGCGGATGCTGGTGGAGGCACGCATCCCCTCCGCTCCGGTCGTCACCCTGCCG
GAGCTGCTCGAGGACCCGCACGTACGCGAGCGCGGCGTGCTTCGCACTGTCACCGACGAGCAGGGCTCGTTCATGACGCT
CGGCAGTCCGCTGTTCCTGTCGGACTCGCCCATGGTGGAGCCGTGGCGGGCGCGCGAGGTCGGCGCCGACACCGACGAGG
TCCTTACCGCGGAGCTGGGCATGTCCGTCGACGACATCGCCAAGCTGCGGGAGGCCGGGGTCATCTGA

Upstream 100 bases:

>100_bases
CGTGGTGTCGGTGCTCAGCGCGTCGAGCAGTTCACTGCGGCACATCCGGACCGGCGCGCGATCCGCGACGCTCGCGCCCG
AGTGACCACGGAGGCCCTGG

Downstream 100 bases:

>100_bases
GGCGTTCCATGGGCCGGTGGGAGCGTCGCGACCACGGGAACCCTGCTGCGTGAGGAGGAGATGTGGGTGAGTCGCGTGCC
GCCGCGGAAGCGCCGACCCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: Formyl-CoA transferase [H]

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MTALEGVKVICVGQFYFAPYCSMLMARLGADVIKVEAPEGDPYRRLPTVDHDGFPIQFRFLNSGKRAIRLDLKQPAGQEI
LRNLVRTADVLVQNLSPGAMDRRGLGYKQLSAINPGLIMASGTGFGSFGPYAGEPAMDLTIQARSAIMSTTGFADGAPVR
TGPSVVDFVAGTHMLGGVLAALFQRTRTGRGQHVEVALQDAIVPSLTSNIAGLLSSATESHERTGNRHGGLAVAPYNAYR
TNDGWIAVLCPTDAHWRRLCELMGDPATDDPRFADMSSRCAHIDDVDAVVENWTRARPKDLLARMLVEARIPSAPVVTLP
ELLEDPHVRERGVLRTVTDEQGSFMTLGSPLFLSDSPMVEPWRAREVGADTDEVLTAELGMSVDDIAKLREAGVI

Sequences:

>Translated_395_residues
MTALEGVKVICVGQFYFAPYCSMLMARLGADVIKVEAPEGDPYRRLPTVDHDGFPIQFRFLNSGKRAIRLDLKQPAGQEI
LRNLVRTADVLVQNLSPGAMDRRGLGYKQLSAINPGLIMASGTGFGSFGPYAGEPAMDLTIQARSAIMSTTGFADGAPVR
TGPSVVDFVAGTHMLGGVLAALFQRTRTGRGQHVEVALQDAIVPSLTSNIAGLLSSATESHERTGNRHGGLAVAPYNAYR
TNDGWIAVLCPTDAHWRRLCELMGDPATDDPRFADMSSRCAHIDDVDAVVENWTRARPKDLLARMLVEARIPSAPVVTLP
ELLEDPHVRERGVLRTVTDEQGSFMTLGSPLFLSDSPMVEPWRAREVGADTDEVLTAELGMSVDDIAKLREAGVI
>Mature_394_residues
TALEGVKVICVGQFYFAPYCSMLMARLGADVIKVEAPEGDPYRRLPTVDHDGFPIQFRFLNSGKRAIRLDLKQPAGQEIL
RNLVRTADVLVQNLSPGAMDRRGLGYKQLSAINPGLIMASGTGFGSFGPYAGEPAMDLTIQARSAIMSTTGFADGAPVRT
GPSVVDFVAGTHMLGGVLAALFQRTRTGRGQHVEVALQDAIVPSLTSNIAGLLSSATESHERTGNRHGGLAVAPYNAYRT
NDGWIAVLCPTDAHWRRLCELMGDPATDDPRFADMSSRCAHIDDVDAVVENWTRARPKDLLARMLVEARIPSAPVVTLPE
LLEDPHVRERGVLRTVTDEQGSFMTLGSPLFLSDSPMVEPWRAREVGADTDEVLTAELGMSVDDIAKLREAGVI

Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=397, Percent_Identity=27.7078085642317, Blast_Score=159, Evalue=3e-39,
Organism=Homo sapiens, GI300863124, Length=328, Percent_Identity=28.3536585365854, Blast_Score=152, Evalue=4e-37,
Organism=Homo sapiens, GI266456254, Length=417, Percent_Identity=28.2973621103118, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI42794625, Length=417, Percent_Identity=28.2973621103118, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI300863126, Length=397, Percent_Identity=23.9294710327456, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI13376042, Length=328, Percent_Identity=24.390243902439, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI266458393, Length=246, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI266458397, Length=246, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=6e-14,
Organism=Escherichia coli, GI87082093, Length=366, Percent_Identity=33.879781420765, Blast_Score=205, Evalue=4e-54,
Organism=Escherichia coli, GI1788717, Length=421, Percent_Identity=31.5914489311164, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1786222, Length=410, Percent_Identity=23.6585365853659, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=271, Percent_Identity=28.0442804428044, Blast_Score=86, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=372, Percent_Identity=24.4623655913978, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24648431, Length=397, Percent_Identity=32.9974811083123, Blast_Score=215, Evalue=3e-56,
Organism=Drosophila melanogaster, GI24585488, Length=244, Percent_Identity=29.9180327868852, Blast_Score=97, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673
- InterPro:   IPR017659 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: =2.8.3.16 [H]

Molecular weight: Translated: 42709; Mature: 42578

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALEGVKVICVGQFYFAPYCSMLMARLGADVIKVEAPEGDPYRRLPTVDHDGFPIQFRF
CCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEE
LNSGKRAIRLDLKQPAGQEILRNLVRTADVLVQNLSPGAMDRRGLGYKQLSAINPGLIMA
ECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEE
SGTGFGSFGPYAGEPAMDLTIQARSAIMSTTGFADGAPVRTGPSVVDFVAGTHMLGGVLA
ECCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ALFQRTRTGRGQHVEVALQDAIVPSLTSNIAGLLSSATESHERTGNRHGGLAVAPYNAYR
HHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEE
TNDGWIAVLCPTDAHWRRLCELMGDPATDDPRFADMSSRCAHIDDVDAVVENWTRARPKD
CCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHCHHHHCCCCCHHHHHHHHHHCCCHHH
LLARMLVEARIPSAPVVTLPELLEDPHVRERGVLRTVTDEQGSFMTLGSPLFLSDSPMVE
HHHHHHHHHCCCCCCCEECHHHHCCCCCHHCCCEEEEECCCCCEEEECCCEEECCCCCCC
PWRAREVGADTDEVLTAELGMSVDDIAKLREAGVI
CCHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
TALEGVKVICVGQFYFAPYCSMLMARLGADVIKVEAPEGDPYRRLPTVDHDGFPIQFRF
CCCCCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEE
LNSGKRAIRLDLKQPAGQEILRNLVRTADVLVQNLSPGAMDRRGLGYKQLSAINPGLIMA
ECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEE
SGTGFGSFGPYAGEPAMDLTIQARSAIMSTTGFADGAPVRTGPSVVDFVAGTHMLGGVLA
ECCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ALFQRTRTGRGQHVEVALQDAIVPSLTSNIAGLLSSATESHERTGNRHGGLAVAPYNAYR
HHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEE
TNDGWIAVLCPTDAHWRRLCELMGDPATDDPRFADMSSRCAHIDDVDAVVENWTRARPKD
CCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHCHHHHCCCCCHHHHHHHHHHCCCHHH
LLARMLVEARIPSAPVVTLPELLEDPHVRERGVLRTVTDEQGSFMTLGSPLFLSDSPMVE
HHHHHHHHHCCCCCCCEECHHHHCCCCCHHCCCEEEEECCCCCEEEECCCEEECCCCCCC
PWRAREVGADTDEVLTAELGMSVDDIAKLREAGVI
CCHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]