| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316178
Identifier: 158316178
GI number: 158316178
Start: 5247957
End: 5249657
Strand: Reverse
Name: 158316178
Synonym: Franean1_4401
Alternate gene names: NA
Gene position: 5249657-5247957 (Counterclockwise)
Preceding gene: 158316179
Following gene: 158316176
Centisome position: 58.45
GC content: 68.49
Gene sequence:
>1701_bases ATGCCTGAGGACAGCGACACCATCCTGCTCGACTACGCCCTCTCCACCGACCCGGCCCCCGTCCCGGCCAGCACCGCCCA AGTCGTCAACCAGGCCCGGGTGAATATCGGCGTCAGCGCCGAAACCACCGTCTACTGCAGCCAGATCGTGATCGCCGTGC CGATCGGCACGGACGACGCGAGCCTGTACGCGCTGGCGCCGGCCGGGTCGTCGAACAGCAACAAGTGGGCCGTCACGGCC CAGCTGCGCAAGGGCCGCGACCTCTGGGACGGCCTGGACGAGGACCAGGACTACAGCACCTTCGTCTACGACTGTGTCTC CAGCACCGACTACCGCGTCGACTACAACCTGGTCTTCGGCGTCTTCGGCGCGGTGAACCAGACAGTCGGTGACGCCGAGA TCGCGATCCAGGAGACCTCCGGGACCAGCTCCGACCCGACCACCTTCACGTTGAAGCCGGCCTACTTCCCGGTGCGCAAG GAATGGCCGGCCTTCTACCTGAAGAACCTGGTCGCGGCCACGCTGGCCAGTCCCACCGTGCCGGCCACCGACTTCTCCGA AGGCGACCCCGTCCGGCTGTCCTGGGAGAGCAACGGCACCTATTTCCAGCTGTTCACGAAGGGGCAGAGCCGGCCGGTCT ACGCCGGCACCGCGACCACCTACACGCTGGAGGAAGGGCTCTCCCGCGACACGGCCTTCGTCCTCACCGCGTCGATGACC GGTTCCCCGGACGAAGACGTCCCGCAGGGCGGCTACGAGCCGATCTACCTGTACGACGCGCTCACCGTCAGCGTGTCCAA CCCGGTGCTCACCCCGAGCAGTGTGACGGTCTCCGGCACCCTGGAGGTGTCAGGCACCAGTTACCTGTCCACCACCGAGA CCGGCTCGCTGAGCTCATCCAGCGTCAGCGTGAACGGCTCGCTGGACGTGGACGGCTCCACAAGCCTGAGCGACACCACC GTCGACGACGGGCTGACGGTCCGCGGCTCCACCGAGCTGGAGGAATCGCTGAGCGTCTCCGGCAGCACCAGCCTCTCCGA CGCGACGGTGACCGGGACGCTGTCCGGGACAGGATCGGCCTCGCTGAGCGACCTGACCGTGCGGGGGCTGTACGGCTACT CCGGGCGGGTGGAGCTGCTCGGCAACGCGAATCTGGTCGACCAGGGCGCCAACCTCGGCCAGACCGGCGTCTACACCGCG ACCGACGGCTTCGCGGTGGCCCAGGTGCTCACCCCCAGCGACAACAGCCAGGCCTCGTACGCCTACGGCTGGATCTACAC CTCGGGTACCTGGTTCGGTGTGCAGGGCGGCACCGTCGGCTCCTTCGGCCCCGGCTGGAGCGACTTCATGAACACCAACC CGAATACGATCACCGTGCCGATCCCGGCGGGCTCCTACTGGTACTACGAGAGCTTCAACCCCTCCAACAACCAGGTCTAC AGCGACGTCCAGTTCTGGTGGTTCCCGCTGGGCAGCGACTACGGCGCCACGGCGACCTACCGCAAGCTCACCGCCGAGGA GCGGGTCGCGGAGCAGGTAGAGGTGCCGCCGGCGCGACCGGCCGTCCCCGACATCGCCGCGGCCGTCGAGCGCCGCGAGA ACGCCGCGGCGGCCTTCGTCGAGCGGCTGGCGGCGGCGTTGGAGGCCGACCTGGCCGAGGAGGTGCGGGCCGACCTGACC CGGCTCCTGAACCAGCACTGA
Upstream 100 bases:
>100_bases GGCCTGACCGCCGCCTCGCCCAGCGCCACCAGTGGTCTGCCACCGAACACCCTGCGCGAGGGCTACCTGCAGTTCATCAC TGATCTCAAGGAGCAGCCGC
Downstream 100 bases:
>100_bases CGGCTGGCGGCTGGGCTCCTCCGCGCGGCGGGTGACCGAAGGGCAGCTGTGCGAGGGAGCCCAGCGCGGCAGCAGGCGAC GGGCCGGGCGGCGCTGCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 566; Mature: 565
Protein sequence:
>566_residues MPEDSDTILLDYALSTDPAPVPASTAQVVNQARVNIGVSAETTVYCSQIVIAVPIGTDDASLYALAPAGSSNSNKWAVTA QLRKGRDLWDGLDEDQDYSTFVYDCVSSTDYRVDYNLVFGVFGAVNQTVGDAEIAIQETSGTSSDPTTFTLKPAYFPVRK EWPAFYLKNLVAATLASPTVPATDFSEGDPVRLSWESNGTYFQLFTKGQSRPVYAGTATTYTLEEGLSRDTAFVLTASMT GSPDEDVPQGGYEPIYLYDALTVSVSNPVLTPSSVTVSGTLEVSGTSYLSTTETGSLSSSSVSVNGSLDVDGSTSLSDTT VDDGLTVRGSTELEESLSVSGSTSLSDATVTGTLSGTGSASLSDLTVRGLYGYSGRVELLGNANLVDQGANLGQTGVYTA TDGFAVAQVLTPSDNSQASYAYGWIYTSGTWFGVQGGTVGSFGPGWSDFMNTNPNTITVPIPAGSYWYYESFNPSNNQVY SDVQFWWFPLGSDYGATATYRKLTAEERVAEQVEVPPARPAVPDIAAAVERRENAAAAFVERLAAALEADLAEEVRADLT RLLNQH
Sequences:
>Translated_566_residues MPEDSDTILLDYALSTDPAPVPASTAQVVNQARVNIGVSAETTVYCSQIVIAVPIGTDDASLYALAPAGSSNSNKWAVTA QLRKGRDLWDGLDEDQDYSTFVYDCVSSTDYRVDYNLVFGVFGAVNQTVGDAEIAIQETSGTSSDPTTFTLKPAYFPVRK EWPAFYLKNLVAATLASPTVPATDFSEGDPVRLSWESNGTYFQLFTKGQSRPVYAGTATTYTLEEGLSRDTAFVLTASMT GSPDEDVPQGGYEPIYLYDALTVSVSNPVLTPSSVTVSGTLEVSGTSYLSTTETGSLSSSSVSVNGSLDVDGSTSLSDTT VDDGLTVRGSTELEESLSVSGSTSLSDATVTGTLSGTGSASLSDLTVRGLYGYSGRVELLGNANLVDQGANLGQTGVYTA TDGFAVAQVLTPSDNSQASYAYGWIYTSGTWFGVQGGTVGSFGPGWSDFMNTNPNTITVPIPAGSYWYYESFNPSNNQVY SDVQFWWFPLGSDYGATATYRKLTAEERVAEQVEVPPARPAVPDIAAAVERRENAAAAFVERLAAALEADLAEEVRADLT RLLNQH >Mature_565_residues PEDSDTILLDYALSTDPAPVPASTAQVVNQARVNIGVSAETTVYCSQIVIAVPIGTDDASLYALAPAGSSNSNKWAVTAQ LRKGRDLWDGLDEDQDYSTFVYDCVSSTDYRVDYNLVFGVFGAVNQTVGDAEIAIQETSGTSSDPTTFTLKPAYFPVRKE WPAFYLKNLVAATLASPTVPATDFSEGDPVRLSWESNGTYFQLFTKGQSRPVYAGTATTYTLEEGLSRDTAFVLTASMTG SPDEDVPQGGYEPIYLYDALTVSVSNPVLTPSSVTVSGTLEVSGTSYLSTTETGSLSSSSVSVNGSLDVDGSTSLSDTTV DDGLTVRGSTELEESLSVSGSTSLSDATVTGTLSGTGSASLSDLTVRGLYGYSGRVELLGNANLVDQGANLGQTGVYTAT DGFAVAQVLTPSDNSQASYAYGWIYTSGTWFGVQGGTVGSFGPGWSDFMNTNPNTITVPIPAGSYWYYESFNPSNNQVYS DVQFWWFPLGSDYGATATYRKLTAEERVAEQVEVPPARPAVPDIAAAVERRENAAAAFVERLAAALEADLAEEVRADLTR LLNQH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60007; Mature: 59876
Theoretical pI: Translated: 3.82; Mature: 3.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEDSDTILLDYALSTDPAPVPASTAQVVNQARVNIGVSAETTVYCSQIVIAVPIGTDDA CCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHEEECCCCCCEEEEEEEEEEEEECCCCC SLYALAPAGSSNSNKWAVTAQLRKGRDLWDGLDEDQDYSTFVYDCVSSTDYRVDYNLVFG EEEEEECCCCCCCCCEEEEEEECCCCHHHCCCCCCCCCHHHEEEHHCCCCEEEEEEEEEE VFGAVNQTVGDAEIAIQETSGTSSDPTTFTLKPAYFPVRKEWPAFYLKNLVAATLASPTV HHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC PATDFSEGDPVRLSWESNGTYFQLFTKGQSRPVYAGTATTYTLEEGLSRDTAFVLTASMT CCCCCCCCCCEEEEECCCCCEEEEEECCCCCCEEECCCEEEEHHHCCCCCEEEEEEEECC GSPDEDVPQGGYEPIYLYDALTVSVSNPVLTPSSVTVSGTLEVSGTSYLSTTETGSLSSS CCCCCCCCCCCCCCEEEEEEEEEEECCCEECCCCEEEEEEEEECCCEEEEECCCCCCCCC SVSVNGSLDVDGSTSLSDTTVDDGLTVRGSTELEESLSVSGSTSLSDATVTGTLSGTGSA EEEECCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCCCCCCCEEEEEEECCCCCC SLSDLTVRGLYGYSGRVELLGNANLVDQGANLGQTGVYTATDGFAVAQVLTPSDNSQASY CCCEEEEEEEECCCCEEEEEECCCEEECCCCCCCCCEEEECCCEEEEEEECCCCCCCCEE AYGWIYTSGTWFGVQGGTVGSFGPGWSDFMNTNPNTITVPIPAGSYWYYESFNPSNNQVY EEEEEEECCEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCEEE SDVQFWWFPLGSDYGATATYRKLTAEERVAEQVEVPPARPAVPDIAAAVERRENAAAAFV EEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH ERLAAALEADLAEEVRADLTRLLNQH HHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PEDSDTILLDYALSTDPAPVPASTAQVVNQARVNIGVSAETTVYCSQIVIAVPIGTDDA CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHEEECCCCCCEEEEEEEEEEEEECCCCC SLYALAPAGSSNSNKWAVTAQLRKGRDLWDGLDEDQDYSTFVYDCVSSTDYRVDYNLVFG EEEEEECCCCCCCCCEEEEEEECCCCHHHCCCCCCCCCHHHEEEHHCCCCEEEEEEEEEE VFGAVNQTVGDAEIAIQETSGTSSDPTTFTLKPAYFPVRKEWPAFYLKNLVAATLASPTV HHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC PATDFSEGDPVRLSWESNGTYFQLFTKGQSRPVYAGTATTYTLEEGLSRDTAFVLTASMT CCCCCCCCCCEEEEECCCCCEEEEEECCCCCCEEECCCEEEEHHHCCCCCEEEEEEEECC GSPDEDVPQGGYEPIYLYDALTVSVSNPVLTPSSVTVSGTLEVSGTSYLSTTETGSLSSS CCCCCCCCCCCCCCEEEEEEEEEEECCCEECCCCEEEEEEEEECCCEEEEECCCCCCCCC SVSVNGSLDVDGSTSLSDTTVDDGLTVRGSTELEESLSVSGSTSLSDATVTGTLSGTGSA EEEECCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCCCCCCCEEEEEEECCCCCC SLSDLTVRGLYGYSGRVELLGNANLVDQGANLGQTGVYTATDGFAVAQVLTPSDNSQASY CCCEEEEEEEECCCCEEEEEECCCEEECCCCCCCCCEEEECCCEEEEEEECCCCCCCCEE AYGWIYTSGTWFGVQGGTVGSFGPGWSDFMNTNPNTITVPIPAGSYWYYESFNPSNNQVY EEEEEEECCEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCEEE SDVQFWWFPLGSDYGATATYRKLTAEERVAEQVEVPPARPAVPDIAAAVERRENAAAAFV EEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH ERLAAALEADLAEEVRADLTRLLNQH HHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA