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The map label for this gene is yfdE [H]

Identifier: 158316089

GI number: 158316089

Start: 5145624

End: 5146676

Strand: Reverse

Name: yfdE [H]

Synonym: Franean1_4307

Alternate gene names: 158316089

Gene position: 5146676-5145624 (Counterclockwise)

Preceding gene: 158316090

Following gene: 158316087

Centisome position: 57.3

GC content: 73.6

Gene sequence:

>1053_bases
ATGAGCGCCGGACCGCTCGACGGCATCCGCATCCTCGAGGTCGGCCACATCCTCGCCGGCCCGTACGCGACGATGGTGCT
CGCCGACCTCGGCGCGGAGGTCACCAAGCTCGAACCACCGGGCGGTGACCTCTCCCGGCAGGTGAGCGACGCCTACTTCG
CCAGCATCAACCGCGGCAAGCGCAGCATCCGTCTCGACCTGACCAGCGAGGACGGCCGGGCCCGGCTCGGTGAGCTCGCC
GCCGACGCGCACGCGCTGCTGGTCAACCTCAAGCCGTCGGCGATCCGCCGGTTCGGCCTGACCTACGAGGACCTGCGCAA
GTACAACGAGAAGCTCGTCTGTGTCGCGCTGACCGGCTTCGGCCTGTCGGCGGGTGACGACCCGGCGTTCGACTACGTGA
TCCAGGCCGCCACGGGCATCGCCGCGCTCACCGGCGACCCGGACGGCCCGCCGACCCTGCCCGGCTACTCCTCGGCGGAC
AACTCCGCCGGCCTCACCGCCGCGGTCGCGCTGCTGGCCCAGATCGTCTCCGGCCGCGGCGGCCAGCTCGAGGTCTCGCT
GCGCGACGTGATGCTCTCCCAGCTCAACTACCGCGCGGCGGCCTACCTCAACGACGGGGTCGAGCCGCGCCGGCTGCCTT
TCGGCGCGCACTCCTACTACGTCCCCGCCCAGCTCTTCCCGACCGCGGACGGATACCTCGCCCTGTTCGTCACCCACGAC
GGCTTCTGGCGCTCGTTCGCCACCGAGGCGGGGGTGAGCGGCTTCGCGACGATGGCCGAGCGCGCGGCGCGCCGCGAGGA
GGTCCTCGCGGTGGTCACCGCGGCCCTCGCCGCGGACACCGCCGCGAACTGGGAGGACCGCCTGCGGCGGCTGGGTGTGC
CGGCGGCGAAGGTGCGCACGCTGCCCGAGGCGCTGGCGGCCACCCCCGAGGTCGTGGTGACCGCCGGCGACTTCCGGCTC
GTCGGCAGCCCGATCCGCGTAGCGGGCTACGAGCCCGTCTACGGGCCGCCGCCTCGCCTGGGCGAGCACGGCGGCCGGCC
CGATCACTCGTAG

Upstream 100 bases:

>100_bases
TGTCGGTGCGGCTGCTGCCCATCGGCGACAACCGGGACGAGCTGGTCGCCTCCAAGCGCCGCACCCGGGAAGTGATCGCC
GCCCTCGCGGCGGAAGTGAG

Downstream 100 bases:

>100_bases
CGGACGACGGCCGAGGAAGAGTCGGGCACTCCCTGACAGGTCAGAACGTAGCCGTCGTCGATCTCGTCCTGGGTGAGGGC
GTCGTTGACCCGCATCGTCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MSAGPLDGIRILEVGHILAGPYATMVLADLGAEVTKLEPPGGDLSRQVSDAYFASINRGKRSIRLDLTSEDGRARLGELA
ADAHALLVNLKPSAIRRFGLTYEDLRKYNEKLVCVALTGFGLSAGDDPAFDYVIQAATGIAALTGDPDGPPTLPGYSSAD
NSAGLTAAVALLAQIVSGRGGQLEVSLRDVMLSQLNYRAAAYLNDGVEPRRLPFGAHSYYVPAQLFPTADGYLALFVTHD
GFWRSFATEAGVSGFATMAERAARREEVLAVVTAALAADTAANWEDRLRRLGVPAAKVRTLPEALAATPEVVVTAGDFRL
VGSPIRVAGYEPVYGPPPRLGEHGGRPDHS

Sequences:

>Translated_350_residues
MSAGPLDGIRILEVGHILAGPYATMVLADLGAEVTKLEPPGGDLSRQVSDAYFASINRGKRSIRLDLTSEDGRARLGELA
ADAHALLVNLKPSAIRRFGLTYEDLRKYNEKLVCVALTGFGLSAGDDPAFDYVIQAATGIAALTGDPDGPPTLPGYSSAD
NSAGLTAAVALLAQIVSGRGGQLEVSLRDVMLSQLNYRAAAYLNDGVEPRRLPFGAHSYYVPAQLFPTADGYLALFVTHD
GFWRSFATEAGVSGFATMAERAARREEVLAVVTAALAADTAANWEDRLRRLGVPAAKVRTLPEALAATPEVVVTAGDFRL
VGSPIRVAGYEPVYGPPPRLGEHGGRPDHS
>Mature_349_residues
SAGPLDGIRILEVGHILAGPYATMVLADLGAEVTKLEPPGGDLSRQVSDAYFASINRGKRSIRLDLTSEDGRARLGELAA
DAHALLVNLKPSAIRRFGLTYEDLRKYNEKLVCVALTGFGLSAGDDPAFDYVIQAATGIAALTGDPDGPPTLPGYSSADN
SAGLTAAVALLAQIVSGRGGQLEVSLRDVMLSQLNYRAAAYLNDGVEPRRLPFGAHSYYVPAQLFPTADGYLALFVTHDG
FWRSFATEAGVSGFATMAERAARREEVLAVVTAALAADTAANWEDRLRRLGVPAAKVRTLPEALAATPEVVVTAGDFRLV
GSPIRVAGYEPVYGPPPRLGEHGGRPDHS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=374, Percent_Identity=29.9465240641711, Blast_Score=152, Evalue=4e-37,
Organism=Homo sapiens, GI300863124, Length=326, Percent_Identity=30.6748466257669, Blast_Score=145, Evalue=5e-35,
Organism=Homo sapiens, GI300863126, Length=370, Percent_Identity=27.8378378378378, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI13376042, Length=326, Percent_Identity=27.6073619631902, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI266456254, Length=195, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI266458393, Length=195, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI42794625, Length=195, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI266458397, Length=195, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI266458395, Length=120, Percent_Identity=35.8333333333333, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI42822893, Length=159, Percent_Identity=32.0754716981132, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87082093, Length=355, Percent_Identity=29.2957746478873, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1788717, Length=392, Percent_Identity=25.765306122449, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1786222, Length=329, Percent_Identity=29.483282674772, Blast_Score=103, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24648431, Length=324, Percent_Identity=38.8888888888889, Blast_Score=178, Evalue=5e-45,
Organism=Drosophila melanogaster, GI24585488, Length=190, Percent_Identity=27.8947368421053, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 36968; Mature: 36837

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGPLDGIRILEVGHILAGPYATMVLADLGAEVTKLEPPGGDLSRQVSDAYFASINRGK
CCCCCCCCEEEEEHHHHHHCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCC
RSIRLDLTSEDGRARLGELAADAHALLVNLKPSAIRRFGLTYEDLRKYNEKLVCVALTGF
EEEEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHCCCHHHHHHHCCCEEEEEEECC
GLSAGDDPAFDYVIQAATGIAALTGDPDGPPTLPGYSSADNSAGLTAAVALLAQIVSGRG
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
GQLEVSLRDVMLSQLNYRAAAYLNDGVEPRRLPFGAHSYYVPAQLFPTADGYLALFVTHD
CEEEEHHHHHHHHHHCHHHEEHCCCCCCCCCCCCCCCCEEECCEECCCCCCEEEEEEECC
GFWRSFATEAGVSGFATMAERAARREEVLAVVTAALAADTAANWEDRLRRLGVPAAKVRT
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHH
LPEALAATPEVVVTAGDFRLVGSPIRVAGYEPVYGPPPRLGEHGGRPDHS
HHHHHHCCCCEEEEECCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAGPLDGIRILEVGHILAGPYATMVLADLGAEVTKLEPPGGDLSRQVSDAYFASINRGK
CCCCCCCEEEEEHHHHHHCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCC
RSIRLDLTSEDGRARLGELAADAHALLVNLKPSAIRRFGLTYEDLRKYNEKLVCVALTGF
EEEEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHCCCHHHHHHHCCCEEEEEEECC
GLSAGDDPAFDYVIQAATGIAALTGDPDGPPTLPGYSSADNSAGLTAAVALLAQIVSGRG
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
GQLEVSLRDVMLSQLNYRAAAYLNDGVEPRRLPFGAHSYYVPAQLFPTADGYLALFVTHD
CEEEEHHHHHHHHHHCHHHEEHCCCCCCCCCCCCCCCCEEECCEECCCCCCEEEEEEECC
GFWRSFATEAGVSGFATMAERAARREEVLAVVTAALAADTAANWEDRLRRLGVPAAKVRT
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHH
LPEALAATPEVVVTAGDFRLVGSPIRVAGYEPVYGPPPRLGEHGGRPDHS
HHHHHHCCCCEEEEECCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]