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The map label for this gene is fadE25 [H]

Identifier: 158316080

GI number: 158316080

Start: 5135912

End: 5137087

Strand: Reverse

Name: fadE25 [H]

Synonym: Franean1_4298

Alternate gene names: 158316080

Gene position: 5137087-5135912 (Counterclockwise)

Preceding gene: 158316081

Following gene: 158316079

Centisome position: 57.19

GC content: 70.58

Gene sequence:

>1176_bases
GTGCAGCTCACGTTTGATGCCGACGTCGAGAAGTTCCGCGCCGAGTTCGTGGCGTTCCTGGACGCGCACCTGCCCAGCGA
GGCCGAGACCGGCGAGCGCGCCTACTCGAGCGCGCACGTCCCCGAGTGGGCGCGCCGCTGGCAGCGGCTGTTGTTCGACT
CCGGCTGGCTGCTGCCGGGCAATCCGCCGGAGTTCGGCGGGCGCAACGCCTCCATCCTCGAGCAGTACGTACATCTCGAG
GAGCTGGATCGCCGGCGCATCTACCACAGCTTCAACCCGCAGGGGCTCGGCATCATCGCCGCCTCGCTGCTGTCGTTCGG
TTCCGAGGAGCAGAAGCGCCGCTGGGCGGTGCCGATCCTGCGGGTCGAGATCACCGCGGCGCTCGGGATGAGCGAGCCCG
GCGCCGGCTCCGACCTGGCCTCGCTGCGTACCCGGGCGGTGCTCGACGGCGACCACTTCGTGGTGAACGGGCAGAAGATC
TGGACGTCTGGCGCCCACGACGCGGACGTGCTGCTCACCTTCGTCCGGACCGACCCGGACGCGCCCAAGCACAAGGGCAT
CAGCGTGCTGCTGATCCCCACCGACACCCCCGGCGTCACCCGCCGGCCCTTCGGCTCCCTGATCGACCGCGACGACGTCG
ACTTCAACGAGGTCTTCTTCGACGACGTCCGGGTGCCGGCGGAGAACCTCGTCGGCGCGCTGAACAACGGCTGGCACGTC
GCGAACGGCTCGCTCGGCCACGAGCGCACCCTGCTGTGGCTGAGCTTCGCGCTGCGGCTGGAGGAGCTCGCCCGCGACTT
CCGTCCCGTCGACGCGCTCGACCGCGACGCGTACGCACGGCTCGTCATGGACGCCCAGGCGCTGCGGCTGCTCGGTTCGG
CGGCGCTGGCGCGGGCCGCGCGCGGCGAGCAGGACGTCGCCGCGCTGTCCGTGCTGAAGCTGCTCGGGTCGGAGGCGGTG
CAGAAGGCCTCGGAGCAGGCGATGGAGTCAGCAGGGGTGGCGGCACTCGAGCATCCCGGGATGACGGCGCCTTACGCTCA
TCTCAATCTCGAGGCGTTCTCCGCCGGGTGGTTCGAGCGCTACGCGAGGTCCTTCGCCGGGACCATCGCCGGTGGCACCT
CGGAGATCCAGCGCACGATCGTCGCCGAGCGTGTACTCGGTCTGCCGCGAAGCTGA

Upstream 100 bases:

>100_bases
TGGGAGAACGACCTGCAGTTCGCGCTCAAGCGGGCAGTCGCGGGCGAGCTGCTGCTCGGCGGCGCCGCCGAGCACCGGGC
GCTGATCGCCGAGGAGTACC

Downstream 100 bases:

>100_bases
GGAGCCAGCCTTGTTAGTCCTATACGACGTCGCCGACGGGATCGCGACGATCACGCTCAACCGCCCCGAGGTCGCGAACG
CGCAGAACGGACCGCTCCTC

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MQLTFDADVEKFRAEFVAFLDAHLPSEAETGERAYSSAHVPEWARRWQRLLFDSGWLLPGNPPEFGGRNASILEQYVHLE
ELDRRRIYHSFNPQGLGIIAASLLSFGSEEQKRRWAVPILRVEITAALGMSEPGAGSDLASLRTRAVLDGDHFVVNGQKI
WTSGAHDADVLLTFVRTDPDAPKHKGISVLLIPTDTPGVTRRPFGSLIDRDDVDFNEVFFDDVRVPAENLVGALNNGWHV
ANGSLGHERTLLWLSFALRLEELARDFRPVDALDRDAYARLVMDAQALRLLGSAALARAARGEQDVAALSVLKLLGSEAV
QKASEQAMESAGVAALEHPGMTAPYAHLNLEAFSAGWFERYARSFAGTIAGGTSEIQRTIVAERVLGLPRS

Sequences:

>Translated_391_residues
MQLTFDADVEKFRAEFVAFLDAHLPSEAETGERAYSSAHVPEWARRWQRLLFDSGWLLPGNPPEFGGRNASILEQYVHLE
ELDRRRIYHSFNPQGLGIIAASLLSFGSEEQKRRWAVPILRVEITAALGMSEPGAGSDLASLRTRAVLDGDHFVVNGQKI
WTSGAHDADVLLTFVRTDPDAPKHKGISVLLIPTDTPGVTRRPFGSLIDRDDVDFNEVFFDDVRVPAENLVGALNNGWHV
ANGSLGHERTLLWLSFALRLEELARDFRPVDALDRDAYARLVMDAQALRLLGSAALARAARGEQDVAALSVLKLLGSEAV
QKASEQAMESAGVAALEHPGMTAPYAHLNLEAFSAGWFERYARSFAGTIAGGTSEIQRTIVAERVLGLPRS
>Mature_391_residues
MQLTFDADVEKFRAEFVAFLDAHLPSEAETGERAYSSAHVPEWARRWQRLLFDSGWLLPGNPPEFGGRNASILEQYVHLE
ELDRRRIYHSFNPQGLGIIAASLLSFGSEEQKRRWAVPILRVEITAALGMSEPGAGSDLASLRTRAVLDGDHFVVNGQKI
WTSGAHDADVLLTFVRTDPDAPKHKGISVLLIPTDTPGVTRRPFGSLIDRDDVDFNEVFFDDVRVPAENLVGALNNGWHV
ANGSLGHERTLLWLSFALRLEELARDFRPVDALDRDAYARLVMDAQALRLLGSAALARAARGEQDVAALSVLKLLGSEAV
QKASEQAMESAGVAALEHPGMTAPYAHLNLEAFSAGWFERYARSFAGTIAGGTSEIQRTIVAERVLGLPRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=245, Percent_Identity=29.3877551020408, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI4501859, Length=352, Percent_Identity=28.6931818181818, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI226958414, Length=194, Percent_Identity=30.9278350515464, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI4557233, Length=354, Percent_Identity=29.6610169491525, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI4557231, Length=302, Percent_Identity=26.8211920529801, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI187960098, Length=302, Percent_Identity=26.8211920529801, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI7656849, Length=302, Percent_Identity=29.1390728476821, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI211971008, Length=336, Percent_Identity=27.3809523809524, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI48976061, Length=336, Percent_Identity=27.3809523809524, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI76496475, Length=265, Percent_Identity=29.811320754717, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI4557235, Length=265, Percent_Identity=29.811320754717, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI38505218, Length=151, Percent_Identity=37.0860927152318, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI4501857, Length=194, Percent_Identity=29.8969072164948, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI21361497, Length=159, Percent_Identity=33.9622641509434, Blast_Score=88, Evalue=1e-17,
Organism=Escherichia coli, GI87081958, Length=192, Percent_Identity=31.7708333333333, Blast_Score=76, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17538396, Length=350, Percent_Identity=28, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17569725, Length=349, Percent_Identity=27.7936962750716, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17534899, Length=239, Percent_Identity=30.9623430962343, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17570075, Length=414, Percent_Identity=25.8454106280193, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17506239, Length=363, Percent_Identity=25.3443526170799, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17508101, Length=359, Percent_Identity=27.0194986072423, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI32563615, Length=255, Percent_Identity=25.8823529411765, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17551932, Length=276, Percent_Identity=27.1739130434783, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17505929, Length=336, Percent_Identity=26.4880952380952, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71985184, Length=148, Percent_Identity=34.4594594594595, Blast_Score=85, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI71985192, Length=148, Percent_Identity=34.4594594594595, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71990804, Length=196, Percent_Identity=26.0204081632653, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17562446, Length=266, Percent_Identity=30.4511278195489, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71982178, Length=201, Percent_Identity=28.8557213930348, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17533517, Length=191, Percent_Identity=29.8429319371728, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24666513, Length=249, Percent_Identity=30.9236947791165, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI21355753, Length=252, Percent_Identity=29.3650793650794, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI21356377, Length=365, Percent_Identity=27.3972602739726, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24660351, Length=234, Percent_Identity=28.6324786324786, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281363737, Length=209, Percent_Identity=30.622009569378, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24646207, Length=340, Percent_Identity=28.8235294117647, Blast_Score=93, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42931; Mature: 42931

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS00072 ACYL_COA_DH_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLTFDADVEKFRAEFVAFLDAHLPSEAETGERAYSSAHVPEWARRWQRLLFDSGWLLPG
CCEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
NPPEFGGRNASILEQYVHLEELDRRRIYHSFNPQGLGIIAASLLSFGSEEQKRRWAVPIL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHCCCEE
RVEITAALGMSEPGAGSDLASLRTRAVLDGDHFVVNGQKIWTSGAHDADVLLTFVRTDPD
EEEEEHHHCCCCCCCCCHHHHHHHHHEECCCEEEECCCEEECCCCCCHHHEEEEEECCCC
APKHKGISVLLIPTDTPGVTRRPFGSLIDRDDVDFNEVFFDDVRVPAENLVGALNNGWHV
CCCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCEEE
ANGSLGHERTLLWLSFALRLEELARDFRPVDALDRDAYARLVMDAQALRLLGSAALARAA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGEQDVAALSVLKLLGSEAVQKASEQAMESAGVAALEHPGMTAPYAHLNLEAFSAGWFER
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEHHHHHHHHHHH
YARSFAGTIAGGTSEIQRTIVAERVLGLPRS
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQLTFDADVEKFRAEFVAFLDAHLPSEAETGERAYSSAHVPEWARRWQRLLFDSGWLLPG
CCEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
NPPEFGGRNASILEQYVHLEELDRRRIYHSFNPQGLGIIAASLLSFGSEEQKRRWAVPIL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHCCCEE
RVEITAALGMSEPGAGSDLASLRTRAVLDGDHFVVNGQKIWTSGAHDADVLLTFVRTDPD
EEEEEHHHCCCCCCCCCHHHHHHHHHEECCCEEEECCCEEECCCCCCHHHEEEEEECCCC
APKHKGISVLLIPTDTPGVTRRPFGSLIDRDDVDFNEVFFDDVRVPAENLVGALNNGWHV
CCCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCEEE
ANGSLGHERTLLWLSFALRLEELARDFRPVDALDRDAYARLVMDAQALRLLGSAALARAA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGEQDVAALSVLKLLGSEAVQKASEQAMESAGVAALEHPGMTAPYAHLNLEAFSAGWFER
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEHHHHHHHHHHH
YARSFAGTIAGGTSEIQRTIVAERVLGLPRS
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]