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The map label for this gene is yfdE [H]

Identifier: 158316078

GI number: 158316078

Start: 5133779

End: 5135005

Strand: Reverse

Name: yfdE [H]

Synonym: Franean1_4296

Alternate gene names: 158316078

Gene position: 5135005-5133779 (Counterclockwise)

Preceding gene: 158316079

Following gene: 158316067

Centisome position: 57.17

GC content: 73.35

Gene sequence:

>1227_bases
ATGACCGCAACGGACGAACGCACCCTCGGCGGCACCGCGGGCGGCGGGCCGCGCCCGCTGGAGGGGCTGCTCGTCGTCGG
TCTTGAGCAGGCCGTTGCGGCACCGATCGCCACCCGGCACCTCGCCGACATGGGCGCCCGGGTGGTGAAGGTTGAGAACC
CGCGCGGCGGGGACTTCGCGCGCCACTACGACGGCGCGCTCAACGGGATGGCGGCCCACTTCGTGTGGGTCAACCGCGGC
AAGGAGTCGCTGACCCTCAACCTCACCGACCCGCGGGGAGCCGAGGCGCTCGAGCGGCTGCTGGGCCGGGCCGACGTCCT
CATCCAGAACCTCGCCCCCGGGGCGGCGGCCCGGCGCGGCCTGGCCGCCGAGCAGGTGGTCGCCCGCCATCCGCGGATGG
TCGCGGTCGACATCTCCGGCTACGGCGAGGGCGGGCCGCTGTCCCACAAGCGGGCCTACGACCTGCTGGTGCAGTCCGAG
GGCGGGTCGTGCTCGGTGACCGGCGAGCCGGGCCGGCCGGCCAAGGCAGGCATCCCGATCATCGACCTCGCCACCGGCAT
GTACGCCCTGAGCTCGATTCTCGCGGCCCTCTACGCCCGCCGGGAGACCGGGCGTGGCTCGGCGATCTCGCTCAGCCTCT
TCGACGTCGTCACGGAGTGGATGGGCTACTCCCTCAACTTCACCATGGGCACCGGTGTCGAACAGCAGCCGGCCGGGGTG
GGCTCGCCCGCCGTCGCGCCCTACGGCGCCTACCCGACGGCGGACGGCCAGACCGTCGTCCTCGGCACCACCAACGACCG
GGAATGGCAGCGGCTGGCCCGCACCGTCCTCGACCGGCCCGACCTGGCGGACGACCCGGCCTTCGCCGGCAACGCCGACC
GGGTGCGTGAACGCGCCCGCCTCGACGAGGTGATCATCGCCTGGTCGAAGAGCGTCACCCTCGTGGAGGCCCAGGAGATC
CTGGACAACGCCGAGCTCGGCAACGCCCGGCTCAACGGCGTCCAGGACGTCCTGGACCACCCGCACCTGCGCGAACGCGA
CCGTTGGCAGGATGTCTCGACTCCCACCGGCTCCGTCCGAGCCCTGCTGCCTCCGCCGATCGCCGCCGAGTGGACGCCCC
CGATGGGCGCGGTACCCGCCCTCGGCGAGCACACCGACGCCCTCCTCGCTGAGCTGGGCTACCCGACTGAGGAGATCGCC
GCCCTGCGCCGCGACCGGGTGGTGTAA

Upstream 100 bases:

>100_bases
GAGACACAGCCGACGGCGGCGGGCGGGGGCGCGTGACGGCCCCGCCGGCCGCCTTTAGCCGCGCGTCGCCCGCCGACGCA
GGCACAGCCCGGGAGGCAGC

Downstream 100 bases:

>100_bases
CGCTCGCCCCGCACCCGAGAGTACGGGTGCGGATCGCCATCTTTCGGGCAAAACACTCGAAGCTCCGGGTAGCCTGCTCG
CCCTTTCGTCTCGTCCTCGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MTATDERTLGGTAGGGPRPLEGLLVVGLEQAVAAPIATRHLADMGARVVKVENPRGGDFARHYDGALNGMAAHFVWVNRG
KESLTLNLTDPRGAEALERLLGRADVLIQNLAPGAAARRGLAAEQVVARHPRMVAVDISGYGEGGPLSHKRAYDLLVQSE
GGSCSVTGEPGRPAKAGIPIIDLATGMYALSSILAALYARRETGRGSAISLSLFDVVTEWMGYSLNFTMGTGVEQQPAGV
GSPAVAPYGAYPTADGQTVVLGTTNDREWQRLARTVLDRPDLADDPAFAGNADRVRERARLDEVIIAWSKSVTLVEAQEI
LDNAELGNARLNGVQDVLDHPHLRERDRWQDVSTPTGSVRALLPPPIAAEWTPPMGAVPALGEHTDALLAELGYPTEEIA
ALRRDRVV

Sequences:

>Translated_408_residues
MTATDERTLGGTAGGGPRPLEGLLVVGLEQAVAAPIATRHLADMGARVVKVENPRGGDFARHYDGALNGMAAHFVWVNRG
KESLTLNLTDPRGAEALERLLGRADVLIQNLAPGAAARRGLAAEQVVARHPRMVAVDISGYGEGGPLSHKRAYDLLVQSE
GGSCSVTGEPGRPAKAGIPIIDLATGMYALSSILAALYARRETGRGSAISLSLFDVVTEWMGYSLNFTMGTGVEQQPAGV
GSPAVAPYGAYPTADGQTVVLGTTNDREWQRLARTVLDRPDLADDPAFAGNADRVRERARLDEVIIAWSKSVTLVEAQEI
LDNAELGNARLNGVQDVLDHPHLRERDRWQDVSTPTGSVRALLPPPIAAEWTPPMGAVPALGEHTDALLAELGYPTEEIA
ALRRDRVV
>Mature_407_residues
TATDERTLGGTAGGGPRPLEGLLVVGLEQAVAAPIATRHLADMGARVVKVENPRGGDFARHYDGALNGMAAHFVWVNRGK
ESLTLNLTDPRGAEALERLLGRADVLIQNLAPGAAARRGLAAEQVVARHPRMVAVDISGYGEGGPLSHKRAYDLLVQSEG
GSCSVTGEPGRPAKAGIPIIDLATGMYALSSILAALYARRETGRGSAISLSLFDVVTEWMGYSLNFTMGTGVEQQPAGVG
SPAVAPYGAYPTADGQTVVLGTTNDREWQRLARTVLDRPDLADDPAFAGNADRVRERARLDEVIIAWSKSVTLVEAQEIL
DNAELGNARLNGVQDVLDHPHLRERDRWQDVSTPTGSVRALLPPPIAAEWTPPMGAVPALGEHTDALLAELGYPTEEIAA
LRRDRVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=384, Percent_Identity=28.90625, Blast_Score=185, Evalue=6e-47,
Organism=Homo sapiens, GI300863124, Length=291, Percent_Identity=32.6460481099656, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI13376042, Length=291, Percent_Identity=29.2096219931272, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI300863126, Length=382, Percent_Identity=25.6544502617801, Blast_Score=135, Evalue=5e-32,
Organism=Homo sapiens, GI266456254, Length=402, Percent_Identity=28.8557213930348, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI42794625, Length=402, Percent_Identity=28.8557213930348, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=30.7984790874525, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI266458397, Length=263, Percent_Identity=30.7984790874525, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI42822893, Length=136, Percent_Identity=34.5588235294118, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI266458395, Length=136, Percent_Identity=34.5588235294118, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI87082093, Length=288, Percent_Identity=32.9861111111111, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1788717, Length=414, Percent_Identity=28.743961352657, Blast_Score=148, Evalue=7e-37,
Organism=Escherichia coli, GI1786222, Length=398, Percent_Identity=26.3819095477387, Blast_Score=96, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=274, Percent_Identity=24.8175182481752, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24648431, Length=397, Percent_Identity=32.4937027707809, Blast_Score=203, Evalue=2e-52,
Organism=Drosophila melanogaster, GI24585488, Length=346, Percent_Identity=25.4335260115607, Blast_Score=99, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43339; Mature: 43208

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATDERTLGGTAGGGPRPLEGLLVVGLEQAVAAPIATRHLADMGARVVKVENPRGGDFA
CCCCCCCCCCCCCCCCCCCCCHHEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
RHYDGALNGMAAHFVWVNRGKESLTLNLTDPRGAEALERLLGRADVLIQNLAPGAAARRG
HHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHC
LAAEQVVARHPRMVAVDISGYGEGGPLSHKRAYDLLVQSEGGSCSVTGEPGRPAKAGIPI
CHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHEEEEEECCCCEEEEECCCCCCCCCCCCH
IDLATGMYALSSILAALYARRETGRGSAISLSLFDVVTEWMGYSLNFTMGTGVEQQPAGV
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCEEEEEECCCCCCCCCCC
GSPAVAPYGAYPTADGQTVVLGTTNDREWQRLARTVLDRPDLADDPAFAGNADRVRERAR
CCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
LDEVIIAWSKSVTLVEAQEILDNAELGNARLNGVQDVLDHPHLRERDRWQDVSTPTGSVR
HHHHEEECCCCEEEEEHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCEE
ALLPPPIAAEWTPPMGAVPALGEHTDALLAELGYPTEEIAALRRDRVV
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TATDERTLGGTAGGGPRPLEGLLVVGLEQAVAAPIATRHLADMGARVVKVENPRGGDFA
CCCCCCCCCCCCCCCCCCCCHHEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
RHYDGALNGMAAHFVWVNRGKESLTLNLTDPRGAEALERLLGRADVLIQNLAPGAAARRG
HHHHHHHCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHC
LAAEQVVARHPRMVAVDISGYGEGGPLSHKRAYDLLVQSEGGSCSVTGEPGRPAKAGIPI
CHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHEEEEEECCCCEEEEECCCCCCCCCCCCH
IDLATGMYALSSILAALYARRETGRGSAISLSLFDVVTEWMGYSLNFTMGTGVEQQPAGV
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCEEEEEECCCCCCCCCCC
GSPAVAPYGAYPTADGQTVVLGTTNDREWQRLARTVLDRPDLADDPAFAGNADRVRERAR
CCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
LDEVIIAWSKSVTLVEAQEILDNAELGNARLNGVQDVLDHPHLRERDRWQDVSTPTGSVR
HHHHEEECCCCEEEEEHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCEE
ALLPPPIAAEWTPPMGAVPALGEHTDALLAELGYPTEEIAALRRDRVV
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]