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The map label for this gene is scoA [H]

Identifier: 158316067

GI number: 158316067

Start: 5122203

End: 5122955

Strand: Reverse

Name: scoA [H]

Synonym: Franean1_4285

Alternate gene names: 158316067

Gene position: 5122955-5122203 (Counterclockwise)

Preceding gene: 158316078

Following gene: 158316066

Centisome position: 57.04

GC content: 71.98

Gene sequence:

>753_bases
GTGGACAGGTTGGACAAGGTGGTTCCGAACGCGGAGCTCGCCGTGGCGGACATCCCCGACGGGGCCTCGCTGGCGGTGGG
CGGATTCGGGCTCTGTGGCATCCCGAGTGGCCTCATCCGCGCGTTGCTCGCCGCCGGCCCCAAGGACCTCGAGACGGTCA
GCAACAACTGCGGCGTGGACGACTGGGGCCTCGGCCTGCTGCTGCGGGCGGGGCGGATCCGGCGCACCACCGGCTCCTAC
GTCGGGGAGAACAAGGAGTTCGAGCGCCAGTTCCTCTCCGGTGAGCTCGAGGTCGAGCTCGTTCCGCAGGGCACCCTGGC
CGAGCGGCTGCGCGCCGGCGGCGCCGGCATCCCGGCCTTCTACACCCCCGCGGGCGTCGGGACCCAGGTGGCCGAGGGCG
GCCTGCCGTGGCTGTACGACGGCTCCGGCGGCATCGCGGTCGCCTCGCCGCCCAAGGAGACCCGGGTCTTCGACGACCGG
ACCTACGTCCTCGAGCGCGGCATAGTCTGCGACTTCGCCCTGGTCCATGCCTGGAAGGGCGACCGGCACGGCAACCTGGT
CTACCGGGCGAGCGCCGCCAACTTCAACCCGCTGTGCGCGACGGCCGGGCGGGTCACCATCGCCGAAGTCGAGGAACTGG
TCGAGCCCGGCGAGCTCGACCCGGCCCAGGTGCACACCCCGGGGATCTTCGTCCAGCGGGTCGTGCACGCGCCCGACACG
GAGAAGCGGATCGAGAAGCGGACGGTGAGCTGA

Upstream 100 bases:

>100_bases
CTCGAGGGCGGTCGGGGGCGGGGCCGTCGCACTGATCGAACGCTGTGACCTGTTGTTACCTGCTGAACGGACGAGACCGT
CGCCGGTGCGGGAGTGAGGG

Downstream 100 bases:

>100_bases
GATGGCCCTGACTCGTACCGAGCTCGCGGCCCGGGTCGCCCGCGAGCTCGAGAGCGGACAGTACGTGAACCTCGGTATCG
GCCTGCCGACCCTGGTTCCG

Product: 3-oxoacid CoA-transferase subunit A

Products: NA

Alternate protein names: Succinyl CoA:3-oxoacid CoA-transferase; OXCT A [H]

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MDRLDKVVPNAELAVADIPDGASLAVGGFGLCGIPSGLIRALLAAGPKDLETVSNNCGVDDWGLGLLLRAGRIRRTTGSY
VGENKEFERQFLSGELEVELVPQGTLAERLRAGGAGIPAFYTPAGVGTQVAEGGLPWLYDGSGGIAVASPPKETRVFDDR
TYVLERGIVCDFALVHAWKGDRHGNLVYRASAANFNPLCATAGRVTIAEVEELVEPGELDPAQVHTPGIFVQRVVHAPDT
EKRIEKRTVS

Sequences:

>Translated_250_residues
MDRLDKVVPNAELAVADIPDGASLAVGGFGLCGIPSGLIRALLAAGPKDLETVSNNCGVDDWGLGLLLRAGRIRRTTGSY
VGENKEFERQFLSGELEVELVPQGTLAERLRAGGAGIPAFYTPAGVGTQVAEGGLPWLYDGSGGIAVASPPKETRVFDDR
TYVLERGIVCDFALVHAWKGDRHGNLVYRASAANFNPLCATAGRVTIAEVEELVEPGELDPAQVHTPGIFVQRVVHAPDT
EKRIEKRTVS
>Mature_250_residues
MDRLDKVVPNAELAVADIPDGASLAVGGFGLCGIPSGLIRALLAAGPKDLETVSNNCGVDDWGLGLLLRAGRIRRTTGSY
VGENKEFERQFLSGELEVELVPQGTLAERLRAGGAGIPAFYTPAGVGTQVAEGGLPWLYDGSGGIAVASPPKETRVFDDR
TYVLERGIVCDFALVHAWKGDRHGNLVYRASAANFNPLCATAGRVTIAEVEELVEPGELDPAQVHTPGIFVQRVVHAPDT
EKRIEKRTVS

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG1788

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit A family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=237, Percent_Identity=59.4936708860759, Blast_Score=290, Evalue=1e-78,
Organism=Homo sapiens, GI11545841, Length=236, Percent_Identity=57.6271186440678, Blast_Score=251, Evalue=4e-67,
Organism=Escherichia coli, GI1788551, Length=222, Percent_Identity=42.3423423423423, Blast_Score=177, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI17531517, Length=244, Percent_Identity=56.9672131147541, Blast_Score=273, Evalue=7e-74,
Organism=Drosophila melanogaster, GI21358325, Length=249, Percent_Identity=49.7991967871486, Blast_Score=252, Evalue=2e-67,
Organism=Drosophila melanogaster, GI24655794, Length=249, Percent_Identity=49.7991967871486, Blast_Score=251, Evalue=2e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012792
- InterPro:   IPR004165
- InterPro:   IPR004163 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 26556; Mature: 26556

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS01273 COA_TRANSF_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLDKVVPNAELAVADIPDGASLAVGGFGLCGIPSGLIRALLAAGPKDLETVSNNCGVD
CCHHHHHCCCCCEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCC
DWGLGLLLRAGRIRRTTGSYVGENKEFERQFLSGELEVELVPQGTLAERLRAGGAGIPAF
CHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCCCE
YTPAGVGTQVAEGGLPWLYDGSGGIAVASPPKETRVFDDRTYVLERGIVCDFALVHAWKG
ECCCCCCHHHHCCCCCEEEECCCCEEECCCCCCCEEECCHHHHHHCCCCHHHHHHHHHCC
DRHGNLVYRASAANFNPLCATAGRVTIAEVEELVEPGELDPAQVHTPGIFVQRVVHAPDT
CCCCCEEEEECCCCCCCHHHCCCCEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCH
EKRIEKRTVS
HHHHHHHCCC
>Mature Secondary Structure
MDRLDKVVPNAELAVADIPDGASLAVGGFGLCGIPSGLIRALLAAGPKDLETVSNNCGVD
CCHHHHHCCCCCEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCC
DWGLGLLLRAGRIRRTTGSYVGENKEFERQFLSGELEVELVPQGTLAERLRAGGAGIPAF
CHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCCCE
YTPAGVGTQVAEGGLPWLYDGSGGIAVASPPKETRVFDDRTYVLERGIVCDFALVHAWKG
ECCCCCCHHHHCCCCCEEEECCCCEEECCCCCCCEEECCHHHHHHCCCCHHHHHHHHHCC
DRHGNLVYRASAANFNPLCATAGRVTIAEVEELVEPGELDPAQVHTPGIFVQRVVHAPDT
CCCCCEEEEECCCCCCCHHHCCCCEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCH
EKRIEKRTVS
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]