| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316045
Identifier: 158316045
GI number: 158316045
Start: 5088666
End: 5089862
Strand: Reverse
Name: 158316045
Synonym: Franean1_4263
Alternate gene names: NA
Gene position: 5089862-5088666 (Counterclockwise)
Preceding gene: 158316046
Following gene: 158316042
Centisome position: 56.67
GC content: 74.94
Gene sequence:
>1197_bases ATGGGTATGGCTGGTCGGCGGGCGCTGGTGATCGGTGGGGGCATCGCGGGACCCGCGGCGGCGATAGCGCTGGCCCGGGC CGGCATTCTTCCCACGGTCTTCGAGGCCGACGCCGACCCGGAGTCCGCCGGCAGCCTGCTGCTCGGCGTCGCCCCGAACG GCCTGCGCGGCCTGGAGCTTCTCGGTGTCCAGGGCCTCGACGAGGCCGGGCACCCCTCGGCGGGAAACCATTTCGTCGAC GTCCATGGCCGCCACCTCGGCACGATCGAGGCGCCCGCCCGGGTGATCCGCCGCAGCGAGCTGCGGCGGGTGCTGCTGCG GGAACTCGACCGGCGCGGGATCCCGGTCGTTCCGGCGAGCAGGTTCGACTCGGTCGACGACCGGGGCGAGGCCAGCGTCC GCGCCTACTTCGCCGACGGCTCCAGCGCCGTGGGCGACTTCCTGCTCGGCTGCGACGGCCTGCGCTCCCGGGTGCGCCGC CACGTCGCGCCCGAGACGCCCTGGCCGACCTTCGCCGGCCTGGTGACCGTCGGCGGGTTCGCGGACCGCGTCGGCCGCTC GTACAAGACCGGCATGCTCGAGTTCACCGTCGTCGGCACCGGGACGTTCATCCACTACGGCACGGCGGGCGGTGAGGTGA TGTGGGCGATGTCGATGGTGTCCGCCGACCCGTGGCCCTCACCGCGCACCGACGCCGGCCAGGAGCAGGTGCGACGCCGG CTGCTCACCCAGCTCGAGCACGCCCCCGCCCACCTGCGGTCGGTCGTGGACGCGACCGACCGGCTCGAGCGGCTCCCGCT GTCGGTCCTGGAGCCGGTCGGGACCTGGTACCGCCGCAACGTCTGCCTGCTCGGGGACGCCGCCCACGCCATGCTCCCGC ACGCCGGCCAGGGGGCGTCCATGGCGATCGAGGACGCGATCGTGCTTGGCCGCTGCCTGCGCGACGCCCCGACGGCCCCC ATCGGCTTCGCCGCCTACCGGGCGGCCCGCGCCGAGCGGGTGGCGCACGTCCACCGGCTGGCCCGGCGCAACCGGCCGCG CACCCCGCCGCCGAACGCCCCCGCCCGCTGGATGCGCGACCACATCGTCCCGGTGGCGATGAAGGTCGGCCTGCGCCAGA TGGCCGCCATGTACGACTACCGGATCGCCTGGGACGAGCCGTCCCCCGGCCGCGACCCGCTCTCAACCGTCTTCTGA
Upstream 100 bases:
>100_bases CCCCCGCGGCGGGGCCGCACCCCCGCCGCCCTGACCATCGCGGCGGGGCCCCACCCCGCCCCGTCCGAGTGGTCGCCTAT TCGTGCGGATAATTAAGCGT
Downstream 100 bases:
>100_bases CATCCAGCCACCCGCCGTCTACTCGATCATCGCGTTGCGGCTGCTCGGCTACGACCTGGACCATCCGGTGATCAGGACGG CCCTGGAGGCACTCGACGCC
Product: FAD-binding monooxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MGMAGRRALVIGGGIAGPAAAIALARAGILPTVFEADADPESAGSLLLGVAPNGLRGLELLGVQGLDEAGHPSAGNHFVD VHGRHLGTIEAPARVIRRSELRRVLLRELDRRGIPVVPASRFDSVDDRGEASVRAYFADGSSAVGDFLLGCDGLRSRVRR HVAPETPWPTFAGLVTVGGFADRVGRSYKTGMLEFTVVGTGTFIHYGTAGGEVMWAMSMVSADPWPSPRTDAGQEQVRRR LLTQLEHAPAHLRSVVDATDRLERLPLSVLEPVGTWYRRNVCLLGDAAHAMLPHAGQGASMAIEDAIVLGRCLRDAPTAP IGFAAYRAARAERVAHVHRLARRNRPRTPPPNAPARWMRDHIVPVAMKVGLRQMAAMYDYRIAWDEPSPGRDPLSTVF
Sequences:
>Translated_398_residues MGMAGRRALVIGGGIAGPAAAIALARAGILPTVFEADADPESAGSLLLGVAPNGLRGLELLGVQGLDEAGHPSAGNHFVD VHGRHLGTIEAPARVIRRSELRRVLLRELDRRGIPVVPASRFDSVDDRGEASVRAYFADGSSAVGDFLLGCDGLRSRVRR HVAPETPWPTFAGLVTVGGFADRVGRSYKTGMLEFTVVGTGTFIHYGTAGGEVMWAMSMVSADPWPSPRTDAGQEQVRRR LLTQLEHAPAHLRSVVDATDRLERLPLSVLEPVGTWYRRNVCLLGDAAHAMLPHAGQGASMAIEDAIVLGRCLRDAPTAP IGFAAYRAARAERVAHVHRLARRNRPRTPPPNAPARWMRDHIVPVAMKVGLRQMAAMYDYRIAWDEPSPGRDPLSTVF >Mature_397_residues GMAGRRALVIGGGIAGPAAAIALARAGILPTVFEADADPESAGSLLLGVAPNGLRGLELLGVQGLDEAGHPSAGNHFVDV HGRHLGTIEAPARVIRRSELRRVLLRELDRRGIPVVPASRFDSVDDRGEASVRAYFADGSSAVGDFLLGCDGLRSRVRRH VAPETPWPTFAGLVTVGGFADRVGRSYKTGMLEFTVVGTGTFIHYGTAGGEVMWAMSMVSADPWPSPRTDAGQEQVRRRL LTQLEHAPAHLRSVVDATDRLERLPLSVLEPVGTWYRRNVCLLGDAAHAMLPHAGQGASMAIEDAIVLGRCLRDAPTAPI GFAAYRAARAERVAHVHRLARRNRPRTPPPNAPARWMRDHIVPVAMKVGLRQMAAMYDYRIAWDEPSPGRDPLSTVF
Specific function: Catalyzes the oxidative decarboxylation of 6- hydroxynicotinic acid to 2,5-dihydroxypyridine. Uses NADH in preference to NADPH as an electron donor [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002938 - InterPro: IPR003042 [H]
Pfam domain/function: PF01494 FAD_binding_3 [H]
EC number: =1.14.13.114 [H]
Molecular weight: Translated: 42867; Mature: 42736
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMAGRRALVIGGGIAGPAAAIALARAGILPTVFEADADPESAGSLLLGVAPNGLRGLEL CCCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEECCCCCCCEEE LGVQGLDEAGHPSAGNHFVDVHGRHLGTIEAPARVIRRSELRRVLLRELDRRGIPVVPAS ECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH RFDSVDDRGEASVRAYFADGSSAVGDFLLGCDGLRSRVRRHVAPETPWPTFAGLVTVGGF HCCCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHCHH ADRVGRSYKTGMLEFTVVGTGTFIHYGTAGGEVMWAMSMVSADPWPSPRTDAGQEQVRRR HHHHCCHHCCCCEEEEEEECCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LLTQLEHAPAHLRSVVDATDRLERLPLSVLEPVGTWYRRNVCLLGDAAHAMLPHAGQGAS HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEECHHHHHCCCCCCCCC MAIEDAIVLGRCLRDAPTAPIGFAAYRAARAERVAHVHRLARRNRPRTPPPNAPARWMRD HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH HIVPVAMKVGLRQMAAMYDYRIAWDEPSPGRDPLSTVF HHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHCC >Mature Secondary Structure GMAGRRALVIGGGIAGPAAAIALARAGILPTVFEADADPESAGSLLLGVAPNGLRGLEL CCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEECCCCCCCEEE LGVQGLDEAGHPSAGNHFVDVHGRHLGTIEAPARVIRRSELRRVLLRELDRRGIPVVPAS ECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH RFDSVDDRGEASVRAYFADGSSAVGDFLLGCDGLRSRVRRHVAPETPWPTFAGLVTVGGF HCCCCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHCHH ADRVGRSYKTGMLEFTVVGTGTFIHYGTAGGEVMWAMSMVSADPWPSPRTDAGQEQVRRR HHHHCCHHCCCCEEEEEEECCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LLTQLEHAPAHLRSVVDATDRLERLPLSVLEPVGTWYRRNVCLLGDAAHAMLPHAGQGAS HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEECHHHHHCCCCCCCCC MAIEDAIVLGRCLRDAPTAPIGFAAYRAARAERVAHVHRLARRNRPRTPPPNAPARWMRD HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH HIVPVAMKVGLRQMAAMYDYRIAWDEPSPGRDPLSTVF HHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA