| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316041
Identifier: 158316041
GI number: 158316041
Start: 5081796
End: 5084339
Strand: Reverse
Name: 158316041
Synonym: Franean1_4259
Alternate gene names: NA
Gene position: 5084339-5081796 (Counterclockwise)
Preceding gene: 158316042
Following gene: 158316037
Centisome position: 56.61
GC content: 71.97
Gene sequence:
>2544_bases ATGGCGCCGCGGGCCATGGTGGAGCCGGTTGCCTTCCTGAGCTATGCGCACACGGACGACACCGGTCGCGGTCGTCTCAC CAGGCTCAGGACGGATCTGGAACACGAGCTCTGCGAGCGCTCCGGCCGGGATATCAAGATCTTCCAGGACCGCAGCGACG TCGTCGCGGGTGACCTCTGGAGATCCACGCTCGAGACCGGGCTGGGCAGGGTCCTGTTCCTGCTGCCGGTGGTGTCTCCC GCGTTTGTGGCCAGTGACGAGTGCCTGCGCGAGTTCACCCAGTTCCTGGCCCTGGAACGCGCCGAGCAGTCCCGGCGCGG CGTGCGCCGCCGGATAATCCCGATCTACTGGTCCGAGGTGGACCTGGCCGGGCTGCTCGCCGCCGCCGAGGAGAACGGCG ACGAGGAGCGCGCCGCCATGCTCCGGGTGCTGCGCGATCGCCAGCACCACGGTTCCCGGCCGCTGCGCTCCCTGCGCCCG AGCAGCGGGACGTACGTGCGGGAGGTCGGTCGCCTGGCGCAGGTGATGGCGGACCGGTTGCCCTCGCCACCGAGCCTCGG GCGCCGGCTGACCGATTCGGTGTCCCTCCTCGCCCGCCGCCGCCGTAGCCGTAGCCGGTTGTGGGCCACGCTCGTCGGCG CGGCCACCCTCCTGGCGGTGCTGGTCACGTTGGTGCTCTGGAACATCATCGGAACCGGCGACGGGGGCGGCACCGCCACC GGCCCGGGCACCGGCGGCCCGTGCGGCAGAGCGGCGTTGGAGGCGATGCGGTCGCGCCAGGGCGCGGCCACCCCGAGGAA GTTGCAGTGCATCGGTGTCCGGACGGGCGCGGACGGGGCCTTCGCCGTCGCCGACCCGAACGCCGGTGCCGGCGCGGCGG CGGGCGGGGGCGCGTTGGCGGGCGGGGGCGGCCCGGCGGTAGCGGCGGTGCCCAGTGCCACCGAGCGGAGCGTCGAGGCG GCCTGGCAGCTGATCGTGGCCGAGAACGAGGCGACCGAGCGGGCGGACCGCGAGCGCGGCGCGCCGACCGACCATCTGAC AGTCGTGGTGGCCGGCCACCTGAGCTCCGGGGAGGAGACCGATGGGCTTGACAACGTCGAGCTGCTCACCGCGCTGACCG CGATGCGGCGGTTCAACGCCGCGCACCGCGACGGCCCGCTGATGCGGGTGTGGGTCGCGAACCTCGGCGGGGACGCGGAG TTCGCAGCCCAGGCCGGACGCAAGATCAGCGATGCGGCCAGGGGTACCGGGCCGGTGGTTGTCGTGGGGCTCGGCCAGAC CCGGGACGACTCGGAGAAGATGATCAATGAGATCGGCCGGACAGGGCTCGCCGGCACCACCGGCGCCTTCTCGGGCGTGC CGATGATCGCCGCCACCCAGTCCGGGACGGACCTCACCGGGGAGCCCGGCTACTTCCGGATCGGCGGATCCGACGACCGG CAGGCCGAGATGGGCCTGTCCTGGGCGCCGCGGGGCCAGCTCGACCAAGTCGTGCCGTTCATCGTCTACGACGAGGCGGA CCGCTGGGGCCGGAGCATGTACGACGCCTACACCAGCAAGCTGACCAGCCCCGAGTACGAGTCCCGGTTCCGCGGCACCG CGTTCGAGACCCTGCTCGACAATCGCGTGATCGCCTACTCGACGAATCCCGACACCCCGAGACCGCTGCCCGAGGCGCTG CCGGACCCGCAGGCCAAAATCTGCGGGGACAACCCCGAGATAGCCGGGGTGGAGGTGGAGAACGCACCCCGGCTCATCAT CTATGCCGGGCGGACGGCCGAGCTCCCCGAGCTACTCACCCTTCTCATGACGCTGCCCTCGAAGTGCCGGAGCAACGTCC ACGTACTGGGTGGGGACGCGCTTTCCGACCTGCGCGACGAGGATGCCTGGGACACCGTCCAGGAGATTCTCGAGAAGGAC CGCGCCGACAGGCCGAAGCTCCTGTATTCGGCTTTTGGCCCGGAGGAGCCCCGTTCGGCGCGAACGCTGCTTGAGAACGG CCTCATCGCCGACTTCGGCCCGGCCGAGAGCGAGTTCGGCAGGGTCCGGGCTCTGCTCCCGGAGGAGGACCAGCCCAGGT TCGCGGAGTTCCCTGACTCGGCCGCCTGGTCCCTGTACGACGCCGTCACGCTCGCCGGGCAGGTCGGACTGCGTGCCGGC TCGTGCCGGCGGGATCCGGCCCTGGCCGGGTGCCGCGAGCTGCTGGAGCGGGCGGACGCCGTCCGCGAGTGGTCGCGCCG TCGGCCCGCCGCCGGCTTCGACGGCTTCGACCTGTACGTCGCGCTCCGCGAGGTCTACCAGGGCAGGAGCGCCTTCGAGG GAGTCACCGGGACGTTGCACGACGCCGAGCCCGACCGCGCGCTCGACGTCCCCAACCAGGGCGGCGGTCTGGACCCGACC GGGAAACTGATGGCGGTCTACGAAGTTTCCGCGGAGCCGTCGCGCGCGGTCGTCGAGCTGCACTGCGCCATCCCGGAACC GCGGCTCCCGACCAAGCCGAGCACGCGCTGCGATGACGAGACGTTCGGCCCAGAAGCACCCTGA
Upstream 100 bases:
>100_bases GTGCGCGGCCTGTTCTGCCGGCGCGGAACGGCACCGGTTATTCCCCCACTGTGCGCGAGCAGGTGATACTGACGTGTTCG CACGAGGGGGGAGGCGTTGA
Downstream 100 bases:
>100_bases CCTGAACCCAGCATCTTGTACACTCCGCACATGTTCGGTGACGCTCCGGTTGTCGTCCACGTCCGGACCTCCTGCGCCAC CGATCTCATCGAGCGGACCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 847; Mature: 846
Protein sequence:
>847_residues MAPRAMVEPVAFLSYAHTDDTGRGRLTRLRTDLEHELCERSGRDIKIFQDRSDVVAGDLWRSTLETGLGRVLFLLPVVSP AFVASDECLREFTQFLALERAEQSRRGVRRRIIPIYWSEVDLAGLLAAAEENGDEERAAMLRVLRDRQHHGSRPLRSLRP SSGTYVREVGRLAQVMADRLPSPPSLGRRLTDSVSLLARRRRSRSRLWATLVGAATLLAVLVTLVLWNIIGTGDGGGTAT GPGTGGPCGRAALEAMRSRQGAATPRKLQCIGVRTGADGAFAVADPNAGAGAAAGGGALAGGGGPAVAAVPSATERSVEA AWQLIVAENEATERADRERGAPTDHLTVVVAGHLSSGEETDGLDNVELLTALTAMRRFNAAHRDGPLMRVWVANLGGDAE FAAQAGRKISDAARGTGPVVVVGLGQTRDDSEKMINEIGRTGLAGTTGAFSGVPMIAATQSGTDLTGEPGYFRIGGSDDR QAEMGLSWAPRGQLDQVVPFIVYDEADRWGRSMYDAYTSKLTSPEYESRFRGTAFETLLDNRVIAYSTNPDTPRPLPEAL PDPQAKICGDNPEIAGVEVENAPRLIIYAGRTAELPELLTLLMTLPSKCRSNVHVLGGDALSDLRDEDAWDTVQEILEKD RADRPKLLYSAFGPEEPRSARTLLENGLIADFGPAESEFGRVRALLPEEDQPRFAEFPDSAAWSLYDAVTLAGQVGLRAG SCRRDPALAGCRELLERADAVREWSRRRPAAGFDGFDLYVALREVYQGRSAFEGVTGTLHDAEPDRALDVPNQGGGLDPT GKLMAVYEVSAEPSRAVVELHCAIPEPRLPTKPSTRCDDETFGPEAP
Sequences:
>Translated_847_residues MAPRAMVEPVAFLSYAHTDDTGRGRLTRLRTDLEHELCERSGRDIKIFQDRSDVVAGDLWRSTLETGLGRVLFLLPVVSP AFVASDECLREFTQFLALERAEQSRRGVRRRIIPIYWSEVDLAGLLAAAEENGDEERAAMLRVLRDRQHHGSRPLRSLRP SSGTYVREVGRLAQVMADRLPSPPSLGRRLTDSVSLLARRRRSRSRLWATLVGAATLLAVLVTLVLWNIIGTGDGGGTAT GPGTGGPCGRAALEAMRSRQGAATPRKLQCIGVRTGADGAFAVADPNAGAGAAAGGGALAGGGGPAVAAVPSATERSVEA AWQLIVAENEATERADRERGAPTDHLTVVVAGHLSSGEETDGLDNVELLTALTAMRRFNAAHRDGPLMRVWVANLGGDAE FAAQAGRKISDAARGTGPVVVVGLGQTRDDSEKMINEIGRTGLAGTTGAFSGVPMIAATQSGTDLTGEPGYFRIGGSDDR QAEMGLSWAPRGQLDQVVPFIVYDEADRWGRSMYDAYTSKLTSPEYESRFRGTAFETLLDNRVIAYSTNPDTPRPLPEAL PDPQAKICGDNPEIAGVEVENAPRLIIYAGRTAELPELLTLLMTLPSKCRSNVHVLGGDALSDLRDEDAWDTVQEILEKD RADRPKLLYSAFGPEEPRSARTLLENGLIADFGPAESEFGRVRALLPEEDQPRFAEFPDSAAWSLYDAVTLAGQVGLRAG SCRRDPALAGCRELLERADAVREWSRRRPAAGFDGFDLYVALREVYQGRSAFEGVTGTLHDAEPDRALDVPNQGGGLDPT GKLMAVYEVSAEPSRAVVELHCAIPEPRLPTKPSTRCDDETFGPEAP >Mature_846_residues APRAMVEPVAFLSYAHTDDTGRGRLTRLRTDLEHELCERSGRDIKIFQDRSDVVAGDLWRSTLETGLGRVLFLLPVVSPA FVASDECLREFTQFLALERAEQSRRGVRRRIIPIYWSEVDLAGLLAAAEENGDEERAAMLRVLRDRQHHGSRPLRSLRPS SGTYVREVGRLAQVMADRLPSPPSLGRRLTDSVSLLARRRRSRSRLWATLVGAATLLAVLVTLVLWNIIGTGDGGGTATG PGTGGPCGRAALEAMRSRQGAATPRKLQCIGVRTGADGAFAVADPNAGAGAAAGGGALAGGGGPAVAAVPSATERSVEAA WQLIVAENEATERADRERGAPTDHLTVVVAGHLSSGEETDGLDNVELLTALTAMRRFNAAHRDGPLMRVWVANLGGDAEF AAQAGRKISDAARGTGPVVVVGLGQTRDDSEKMINEIGRTGLAGTTGAFSGVPMIAATQSGTDLTGEPGYFRIGGSDDRQ AEMGLSWAPRGQLDQVVPFIVYDEADRWGRSMYDAYTSKLTSPEYESRFRGTAFETLLDNRVIAYSTNPDTPRPLPEALP DPQAKICGDNPEIAGVEVENAPRLIIYAGRTAELPELLTLLMTLPSKCRSNVHVLGGDALSDLRDEDAWDTVQEILEKDR ADRPKLLYSAFGPEEPRSARTLLENGLIADFGPAESEFGRVRALLPEEDQPRFAEFPDSAAWSLYDAVTLAGQVGLRAGS CRRDPALAGCRELLERADAVREWSRRRPAAGFDGFDLYVALREVYQGRSAFEGVTGTLHDAEPDRALDVPNQGGGLDPTG KLMAVYEVSAEPSRAVVELHCAIPEPRLPTKPSTRCDDETFGPEAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91110; Mature: 90979
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS50104 TIR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPRAMVEPVAFLSYAHTDDTGRGRLTRLRTDLEHELCERSGRDIKIFQDRSDVVAGDLW CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH RSTLETGLGRVLFLLPVVSPAFVASDECLREFTQFLALERAEQSRRGVRRRIIPIYWSEV HHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECHH DLAGLLAAAEENGDEERAAMLRVLRDRQHHGSRPLRSLRPSSGTYVREVGRLAQVMADRL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHC PSPPSLGRRLTDSVSLLARRRRSRSRLWATLVGAATLLAVLVTLVLWNIIGTGDGGGTAT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GPGTGGPCGRAALEAMRSRQGAATPRKLQCIGVRTGADGAFAVADPNAGAGAAAGGGALA CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCC GGGGPAVAAVPSATERSVEAAWQLIVAENEATERADRERGAPTDHLTVVVAGHLSSGEET CCCCCCEEECCCHHHHHHHHHHHEEEECCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC DGLDNVELLTALTAMRRFNAAHRDGPLMRVWVANLGGDAEFAAQAGRKISDAARGTGPVV CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHCCCCCEE VVGLGQTRDDSEKMINEIGRTGLAGTTGAFSGVPMIAATQSGTDLTGEPGYFRIGGSDDR EEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCC QAEMGLSWAPRGQLDQVVPFIVYDEADRWGRSMYDAYTSKLTSPEYESRFRGTAFETLLD HHHCCCCCCCCCCHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHC NRVIAYSTNPDTPRPLPEALPDPQAKICGDNPEIAGVEVENAPRLIIYAGRTAELPELLT CCEEEEECCCCCCCCCHHHCCCCCHHCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHH LLMTLPSKCRSNVHVLGGDALSDLRDEDAWDTVQEILEKDRADRPKLLYSAFGPEEPRSA HHHHCCHHHCCCEEEECCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHH RTLLENGLIADFGPAESEFGRVRALLPEEDQPRFAEFPDSAAWSLYDAVTLAGQVGLRAG HHHHHCCCEECCCCCHHHHHHHEECCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCC SCRRDPALAGCRELLERADAVREWSRRRPAAGFDGFDLYVALREVYQGRSAFEGVTGTLH CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCC DAEPDRALDVPNQGGGLDPTGKLMAVYEVSAEPSRAVVELHCAIPEPRLPTKPSTRCDDE CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCC TFGPEAP CCCCCCC >Mature Secondary Structure APRAMVEPVAFLSYAHTDDTGRGRLTRLRTDLEHELCERSGRDIKIFQDRSDVVAGDLW CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH RSTLETGLGRVLFLLPVVSPAFVASDECLREFTQFLALERAEQSRRGVRRRIIPIYWSEV HHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECHH DLAGLLAAAEENGDEERAAMLRVLRDRQHHGSRPLRSLRPSSGTYVREVGRLAQVMADRL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHC PSPPSLGRRLTDSVSLLARRRRSRSRLWATLVGAATLLAVLVTLVLWNIIGTGDGGGTAT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GPGTGGPCGRAALEAMRSRQGAATPRKLQCIGVRTGADGAFAVADPNAGAGAAAGGGALA CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCC GGGGPAVAAVPSATERSVEAAWQLIVAENEATERADRERGAPTDHLTVVVAGHLSSGEET CCCCCCEEECCCHHHHHHHHHHHEEEECCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC DGLDNVELLTALTAMRRFNAAHRDGPLMRVWVANLGGDAEFAAQAGRKISDAARGTGPVV CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHCCCCCEE VVGLGQTRDDSEKMINEIGRTGLAGTTGAFSGVPMIAATQSGTDLTGEPGYFRIGGSDDR EEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCC QAEMGLSWAPRGQLDQVVPFIVYDEADRWGRSMYDAYTSKLTSPEYESRFRGTAFETLLD HHHCCCCCCCCCCHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHC NRVIAYSTNPDTPRPLPEALPDPQAKICGDNPEIAGVEVENAPRLIIYAGRTAELPELLT CCEEEEECCCCCCCCCHHHCCCCCHHCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHH LLMTLPSKCRSNVHVLGGDALSDLRDEDAWDTVQEILEKDRADRPKLLYSAFGPEEPRSA HHHHCCHHHCCCEEEECCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHH RTLLENGLIADFGPAESEFGRVRALLPEEDQPRFAEFPDSAAWSLYDAVTLAGQVGLRAG HHHHHCCCEECCCCCHHHHHHHEECCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCC SCRRDPALAGCRELLERADAVREWSRRRPAAGFDGFDLYVALREVYQGRSAFEGVTGTLH CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCC DAEPDRALDVPNQGGGLDPTGKLMAVYEVSAEPSRAVVELHCAIPEPRLPTKPSTRCDDE CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCC TFGPEAP CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA