| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315736
Identifier: 158315736
GI number: 158315736
Start: 4718929
End: 4720341
Strand: Reverse
Name: 158315736
Synonym: Franean1_3948
Alternate gene names: NA
Gene position: 4720341-4718929 (Counterclockwise)
Preceding gene: 158315737
Following gene: 158315735
Centisome position: 52.55
GC content: 63.48
Gene sequence:
>1413_bases TTGGAATGCCCGCCAGAGCCGCCATCCAGCCACATGCGGCATTTCTTCGTGCCGACCTCTGCGGCGCGTCGCTTCAGCGT TTCAAGCGACCTTGATACTTTCCACGCCGGGACGGATGCTCTGCCCTTGCGTCCTGCCGCTATTTCCTGTTTCTTGCATC ATTTTCGGGAAGTTAAAAGACCTATGAGACCCTACACTTGGCGGCGCATCACGATATCGGCATCGGTGCTGCTAGCCAGT TTCGCCTTCGTCGCGCCAGCACTGGCTGAAACGGCACCCACCCAGCCGATCGCGACCGACTTCAGCAGCCACGGCACGGA TCCACCCGATGGACCAGTCACGAAGCAGCTCACGGTCAACACCTACAACCTGTATCTCGGCGCCGACCTCACCCCGATCG TCACCGCCCCGGACCAGCAAGAGATGATCAATCAGGCCCGGATCGCCTACGAGCACGTGTTGTGGGCCGACTTCCCTGCG CGGGCGCAGGCAATCGCGAAGCTGCTCGCCCGGCAACGACCCGACGTACTCGGCCTGCAGGAGGTCGCGCTGTGGCAAGA GGGCCCGATCGGCGGCCCACTGCGCACAACCGTCGATTACCTGCCGATCCTACAGAAAGCACTCAAGGAACGCGGCCTGA ACTACGAGGTCGCCGCGGAGAACACCAACTTCTCCGGCCAGTTGCCGATCAGCGCCACCAGACAAGTGAGGTTCACCGAC CACGACGCTATTCTCGTTCGAACCGGCATCCCCGGCCGGTGGCAAGTCAGCCACCCCGAATCGCACGAGTACGTGGCTCG ACTGACTCTCCCGACCGCGGCTGGGCCATTTACGATCACGCGCGGCTGGTCGGCGGTCGACGTGACCGCCCGAGGAAAGA CGGTACGAGTCGCCAACACGCACCTGGAGCCTGTCAGCCCGCAGGTTCGTAACGCCCAGGCGAACGAGCTCTATTCCGCG CTCGTCACCGCGACACGCCCGGTGATCCTACTCGGCGATCTGAATTCACAACCGAGCGACCTCACCGGCCCGTATGGCCT GTTCACCCAGGGCGGATATACGGACGCGTGGGCGACGATCCACGGCCCAGACGGCGGATTCACCGCCACGCAGATCGAAC TCGATGTTATGCCCTCGACCCTTGATCGGCGCATCGATTACGTGCTGTACCAACCTACGCGTCCCGAACACTCCGACCTC GAACAGGTCCGGGCGGCGCGGGCGACCGTGATCGGTAACAAGCTGCGCGACCGGACCCCCTCCGGGCTGTGGCCCTCCGA TCACGCGGGTGTCGTAGCCGCGCTCACCGTTTCCCATCAACGGCATTGCCTCTGCGATGCGTCGCCGGCGCACTGGAACA CGTGGAGCATCTTCGATACCTACTTCCCGCTGACCTCGCTGGCCAGCAGGTAA
Upstream 100 bases:
>100_bases CAATATGCGGGCAGTAGTACGAATAGAGCTCGGTAGATGTGCGTGTTCCGGCCTGCGCGTCAGCAGCTTTGGCCTGCCAG CGTATCGCCAGGATGATTCC
Downstream 100 bases:
>100_bases TGCTGGACGAGTCGGTCCCCACCTCAAGGCCGGTCCCGGGAGCGTGCGGTGGATGTCCCAGCGCCGCGCGCTGCCCTGGT CATCGGCGGGCCGGGGCGGT
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein
Number of amino acids: Translated: 470; Mature: 470
Protein sequence:
>470_residues MECPPEPPSSHMRHFFVPTSAARRFSVSSDLDTFHAGTDALPLRPAAISCFLHHFREVKRPMRPYTWRRITISASVLLAS FAFVAPALAETAPTQPIATDFSSHGTDPPDGPVTKQLTVNTYNLYLGADLTPIVTAPDQQEMINQARIAYEHVLWADFPA RAQAIAKLLARQRPDVLGLQEVALWQEGPIGGPLRTTVDYLPILQKALKERGLNYEVAAENTNFSGQLPISATRQVRFTD HDAILVRTGIPGRWQVSHPESHEYVARLTLPTAAGPFTITRGWSAVDVTARGKTVRVANTHLEPVSPQVRNAQANELYSA LVTATRPVILLGDLNSQPSDLTGPYGLFTQGGYTDAWATIHGPDGGFTATQIELDVMPSTLDRRIDYVLYQPTRPEHSDL EQVRAARATVIGNKLRDRTPSGLWPSDHAGVVAALTVSHQRHCLCDASPAHWNTWSIFDTYFPLTSLASR
Sequences:
>Translated_470_residues MECPPEPPSSHMRHFFVPTSAARRFSVSSDLDTFHAGTDALPLRPAAISCFLHHFREVKRPMRPYTWRRITISASVLLAS FAFVAPALAETAPTQPIATDFSSHGTDPPDGPVTKQLTVNTYNLYLGADLTPIVTAPDQQEMINQARIAYEHVLWADFPA RAQAIAKLLARQRPDVLGLQEVALWQEGPIGGPLRTTVDYLPILQKALKERGLNYEVAAENTNFSGQLPISATRQVRFTD HDAILVRTGIPGRWQVSHPESHEYVARLTLPTAAGPFTITRGWSAVDVTARGKTVRVANTHLEPVSPQVRNAQANELYSA LVTATRPVILLGDLNSQPSDLTGPYGLFTQGGYTDAWATIHGPDGGFTATQIELDVMPSTLDRRIDYVLYQPTRPEHSDL EQVRAARATVIGNKLRDRTPSGLWPSDHAGVVAALTVSHQRHCLCDASPAHWNTWSIFDTYFPLTSLASR >Mature_470_residues MECPPEPPSSHMRHFFVPTSAARRFSVSSDLDTFHAGTDALPLRPAAISCFLHHFREVKRPMRPYTWRRITISASVLLAS FAFVAPALAETAPTQPIATDFSSHGTDPPDGPVTKQLTVNTYNLYLGADLTPIVTAPDQQEMINQARIAYEHVLWADFPA RAQAIAKLLARQRPDVLGLQEVALWQEGPIGGPLRTTVDYLPILQKALKERGLNYEVAAENTNFSGQLPISATRQVRFTD HDAILVRTGIPGRWQVSHPESHEYVARLTLPTAAGPFTITRGWSAVDVTARGKTVRVANTHLEPVSPQVRNAQANELYSA LVTATRPVILLGDLNSQPSDLTGPYGLFTQGGYTDAWATIHGPDGGFTATQIELDVMPSTLDRRIDYVLYQPTRPEHSDL EQVRAARATVIGNKLRDRTPSGLWPSDHAGVVAALTVSHQRHCLCDASPAHWNTWSIFDTYFPLTSLASR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51740; Mature: 51740
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MECPPEPPSSHMRHFFVPTSAARRFSVSSDLDTFHAGTDALPLRPAAISCFLHHFREVKR CCCCCCCCHHHCEEEECCCHHHHEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHC PMRPYTWRRITISASVLLASFAFVAPALAETAPTQPIATDFSSHGTDPPDGPVTKQLTVN CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCEEEEEEE TYNLYLGADLTPIVTAPDQQEMINQARIAYEHVLWADFPARAQAIAKLLARQRPDVLGLQ EEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHH EVALWQEGPIGGPLRTTVDYLPILQKALKERGLNYEVAAENTNFSGQLPISATRQVRFTD HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEC HDAILVRTGIPGRWQVSHPESHEYVARLTLPTAAGPFTITRGWSAVDVTARGKTVRVANT CCEEEEEECCCCCEECCCCCCCCEEEEEEECCCCCCEEEECCCCEEEEEECCCEEEEECC HLEPVSPQVRNAQANELYSALVTATRPVILLGDLNSQPSDLTGPYGLFTQGGYTDAWATI CCCCCCCHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE HGPDGGFTATQIELDVMPSTLDRRIDYVLYQPTRPEHSDLEQVRAARATVIGNKLRDRTP ECCCCCEEEEEEEEEECCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC SGLWPSDHAGVVAALTVSHQRHCLCDASPAHWNTWSIFDTYFPLTSLASR CCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCEEEHHHHHHCHHHHHCC >Mature Secondary Structure MECPPEPPSSHMRHFFVPTSAARRFSVSSDLDTFHAGTDALPLRPAAISCFLHHFREVKR CCCCCCCCHHHCEEEECCCHHHHEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHC PMRPYTWRRITISASVLLASFAFVAPALAETAPTQPIATDFSSHGTDPPDGPVTKQLTVN CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCEEEEEEE TYNLYLGADLTPIVTAPDQQEMINQARIAYEHVLWADFPARAQAIAKLLARQRPDVLGLQ EEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHH EVALWQEGPIGGPLRTTVDYLPILQKALKERGLNYEVAAENTNFSGQLPISATRQVRFTD HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEC HDAILVRTGIPGRWQVSHPESHEYVARLTLPTAAGPFTITRGWSAVDVTARGKTVRVANT CCEEEEEECCCCCEECCCCCCCCEEEEEEECCCCCCEEEECCCCEEEEEECCCEEEEECC HLEPVSPQVRNAQANELYSALVTATRPVILLGDLNSQPSDLTGPYGLFTQGGYTDAWATI CCCCCCCHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE HGPDGGFTATQIELDVMPSTLDRRIDYVLYQPTRPEHSDLEQVRAARATVIGNKLRDRTP ECCCCCEEEEEEEEEECCHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC SGLWPSDHAGVVAALTVSHQRHCLCDASPAHWNTWSIFDTYFPLTSLASR CCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCEEEHHHHHHCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA