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The map label for this gene is alkR [H]

Identifier: 158315638

GI number: 158315638

Start: 4570873

End: 4571874

Strand: Reverse

Name: alkR [H]

Synonym: Franean1_3848

Alternate gene names: 158315638

Gene position: 4571874-4570873 (Counterclockwise)

Preceding gene: 158315641

Following gene: 158315634

Centisome position: 50.9

GC content: 76.85

Gene sequence:

>1002_bases
ATGGACGTCCTGGCCGGAATGCTGGACGGGCCGCGGGCGCGGGGGGCGTTCACGATCCGCTCGGTCATGTCCCCGCCCTG
GTCGATGCTCATCAGGGACCAGGCGCCGCTGACCGTCGTCGCGGTCGTGCACGGCGAGGCCTGGGTGCTCCCCCGGGACA
CCCCCGCGGTGCAGCTGCGCGCGGGCGACGTGGCCGTCGCCCGCGGGCCCGACCCGTACGTCGTCGCCGACGACCCGGCT
ACCCCGCCGCGGATCGTGATCCATCCCGGGCAGGTCTGCACCACGCTGTCGGGTGCGAGCCTCGCCGCGCAGATGGATCT
CGGCGTGCGCACCTGGGGCAACCAGCGCGACGGCGCGACGGCCCCGCCGACGACGATGCTCACCGGCACGTACCAGCAGC
ACAGCGAGGTCAGCCGCCGGCTGCTCGACGCGCTGCCCGCGCTGGCCGTCATCCGCGCGGACGACTGGGACTGCCCGCTG
GTACCCATGCTGGCCCAGGAGATCGGCCGGGACGACCCGGGCCAGGCCGCCGTCCTCGACCGCCTCCTGGACCTGCTGCT
CGTCACCGCGGTGCGGGCCTGGTTCGCCCGCCCCGACACCGACGCGCCGCCGTGGTGGCGGGCCAACGGCGACCCCGTCG
TCGGCCACGCGCTGCGGCTGCTGCACAACCACCCCGAGCGCCCCTGGACGATCGCCGCCCTCGCCGCGGCCACGGGCGTC
TCCCGCGCCTCGTTCGCGCGCCGGTTCGCCAGCCTGGTCGGCGAGCCGCCCATCGCGTTCCTGACCGGCTGGCGTCTCAC
CCTGGCCGCCGACCTGCTCCAGGAGCCGGCGGCCACGGTCGGCGCGGTGGCCCGCCAGGTCGGCTACGGCAGCCCGTTCG
CCCTCAGCACGGCGTTCCGCCGCCGGTACGGCGTCAGTCCGCAGCAGTACCGCGCCCGCGCCCACGGCGACCGGGCGGAC
CAGCCGCCGTCCGACGGCCGCCCGGCGGACGCGCCCGGATGA

Upstream 100 bases:

>100_bases
CGAACCATGATCCGAACATACCAGCGATGCACACATACGGTCACGGTCCGTACCCGATTCCCCTCACGCCTGAAGACGCC
AGCCCCCTCGGGAAATCCTG

Downstream 100 bases:

>100_bases
TCCGTTCGGCGACGACGACGTTGATGAACCAGCCGGCGGCCATGAGCACCGCCCGGCTGGCCTCGCCCGGTTTCCCGACG
GCGATCTCGTAGGGCAGGTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MDVLAGMLDGPRARGAFTIRSVMSPPWSMLIRDQAPLTVVAVVHGEAWVLPRDTPAVQLRAGDVAVARGPDPYVVADDPA
TPPRIVIHPGQVCTTLSGASLAAQMDLGVRTWGNQRDGATAPPTTMLTGTYQQHSEVSRRLLDALPALAVIRADDWDCPL
VPMLAQEIGRDDPGQAAVLDRLLDLLLVTAVRAWFARPDTDAPPWWRANGDPVVGHALRLLHNHPERPWTIAALAAATGV
SRASFARRFASLVGEPPIAFLTGWRLTLAADLLQEPAATVGAVARQVGYGSPFALSTAFRRRYGVSPQQYRARAHGDRAD
QPPSDGRPADAPG

Sequences:

>Translated_333_residues
MDVLAGMLDGPRARGAFTIRSVMSPPWSMLIRDQAPLTVVAVVHGEAWVLPRDTPAVQLRAGDVAVARGPDPYVVADDPA
TPPRIVIHPGQVCTTLSGASLAAQMDLGVRTWGNQRDGATAPPTTMLTGTYQQHSEVSRRLLDALPALAVIRADDWDCPL
VPMLAQEIGRDDPGQAAVLDRLLDLLLVTAVRAWFARPDTDAPPWWRANGDPVVGHALRLLHNHPERPWTIAALAAATGV
SRASFARRFASLVGEPPIAFLTGWRLTLAADLLQEPAATVGAVARQVGYGSPFALSTAFRRRYGVSPQQYRARAHGDRAD
QPPSDGRPADAPG
>Mature_333_residues
MDVLAGMLDGPRARGAFTIRSVMSPPWSMLIRDQAPLTVVAVVHGEAWVLPRDTPAVQLRAGDVAVARGPDPYVVADDPA
TPPRIVIHPGQVCTTLSGASLAAQMDLGVRTWGNQRDGATAPPTTMLTGTYQQHSEVSRRLLDALPALAVIRADDWDCPL
VPMLAQEIGRDDPGQAAVLDRLLDLLLVTAVRAWFARPDTDAPPWWRANGDPVVGHALRLLHNHPERPWTIAALAAATGV
SRASFARRFASLVGEPPIAFLTGWRLTLAADLLQEPAATVGAVARQVGYGSPFALSTAFRRRYGVSPQQYRARAHGDRAD
QPPSDGRPADAPG

Specific function: This protein activates the expression of the alkane 1- monooxygenase AlkM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=197, Percent_Identity=30.9644670050761, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35666; Mature: 35666

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLAGMLDGPRARGAFTIRSVMSPPWSMLIRDQAPLTVVAVVHGEAWVLPRDTPAVQLR
CCCHHHCCCCCCCCCCEEHHHHHCCCHHEEEECCCCEEEEEEECCCEEEECCCCCEEEEE
AGDVAVARGPDPYVVADDPATPPRIVIHPGQVCTTLSGASLAAQMDLGVRTWGNQRDGAT
ECCEEEECCCCCEEEECCCCCCCEEEEECCHHHHHCCCCHHEEHHCCCCCCCCCCCCCCC
APPTTMLTGTYQQHSEVSRRLLDALPALAVIRADDWDCPLVPMLAQEIGRDDPGQAAVLD
CCCCEEEECCHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHH
RLLDLLLVTAVRAWFARPDTDAPPWWRANGDPVVGHALRLLHNHPERPWTIAALAAATGV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHCC
SRASFARRFASLVGEPPIAFLTGWRLTLAADLLQEPAATVGAVARQVGYGSPFALSTAFR
HHHHHHHHHHHHHCCCCEEEHHCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHH
RRYGVSPQQYRARAHGDRADQPPSDGRPADAPG
HHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDVLAGMLDGPRARGAFTIRSVMSPPWSMLIRDQAPLTVVAVVHGEAWVLPRDTPAVQLR
CCCHHHCCCCCCCCCCEEHHHHHCCCHHEEEECCCCEEEEEEECCCEEEECCCCCEEEEE
AGDVAVARGPDPYVVADDPATPPRIVIHPGQVCTTLSGASLAAQMDLGVRTWGNQRDGAT
ECCEEEECCCCCEEEECCCCCCCEEEEECCHHHHHCCCCHHEEHHCCCCCCCCCCCCCCC
APPTTMLTGTYQQHSEVSRRLLDALPALAVIRADDWDCPLVPMLAQEIGRDDPGQAAVLD
CCCCEEEECCHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHH
RLLDLLLVTAVRAWFARPDTDAPPWWRANGDPVVGHALRLLHNHPERPWTIAALAAATGV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHCC
SRASFARRFASLVGEPPIAFLTGWRLTLAADLLQEPAATVGAVARQVGYGSPFALSTAFR
HHHHHHHHHHHHHCCCCEEEHHCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHH
RRYGVSPQQYRARAHGDRADQPPSDGRPADAPG
HHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9546151 [H]