Click here to switch to the map view.

The map label for this gene is 158315628

Identifier: 158315628

GI number: 158315628

Start: 4560253

End: 4561365

Strand: Reverse

Name: 158315628

Synonym: Franean1_3838

Alternate gene names: NA

Gene position: 4561365-4560253 (Counterclockwise)

Preceding gene: 158315629

Following gene: 158315627

Centisome position: 50.78

GC content: 68.37

Gene sequence:

>1113_bases
TTGCCCGCCGAACGAGGCCCGCGTCGGGCAGGCTGGACGGCCATGGCGTGGTCGCGGCTCTACGCCCTGACGCGCAACGC
TCTCGGACTGATGTTGCTCCGCGTGCGTGGGGACACCTCGAAAGAGGTGGAGCTCCTCGTCCTGCGACATCAGGTGGCGG
TGCTGCGACGGCAGGTGAACCGGCCGGCGCTGGAACCGAAGGATCGGGTGATCCTCACGGCGCTGTCCCGGCTGCTACCC
CGCGCCCGCTGGGACGTCTTCGTCGTCACCCCGGCCACCGTCTTGCGCTGGCATCGTGACCTCCTCGCACGACAATGGAC
CTACCGGAGCAAGAAGCCCGACCGGCCACCGATCCGACATGAGATCCGTGAGCTGGTCCTGCGCCTCGCGCGGGAGAACC
CGACCTGGGGCCACCGCCGGATCCAAGGAGGACTCGCCGGGCTGGGCTACCCGGTCGGAGTCGCCACCGTCTGGCGGATC
CTGCACCACGCCGGTGTCGACCCCGCGCCCCGCCGGGCCGACGCCTCCTGGCACACATTCCTGCGCGCACAGGCCTCCGG
CATACTGGCCTGCGACTTTTTCGCGGTGGACACCGTGTTCCTGCAACGGATCTACGTGTTCTTCGTCGTGGAGATCGCCA
CCCGCCATGTCCATGTCCATGTCCTCGGAGTCACGAAACACCCGACCGCGGCCTGGGTCACCCAGCGTGCACGGACCCTG
CTGATGGATCTCGAGGACCGCGGCCGCCGGTTCCGGTTCCTCATCCGTGACCGCGACACGAAGTTCACAGCTTCCTTCGA
CACCGTCTTCACGGCAGCCGACATCGACGTGGTACGCACGCCCCCGCAGTCGCCCCAGGCAAACGCGATCGCGGAACGCT
GGGTGGGCAGCGCCCGCCGCGAATGCACCGACAGACTGCTGATCGTCTCCGAACGGCACCTGACGTCAGTCCTCACCAGC
TACGCCGAGCATTTCAACACCCACCGGCCTCACCACTCCCTCGGCCAGCACCCACCCGACCCGCCACCCGTGGTCGCCCC
GCCCCTGGGTTCCACCGTCCGTCGCACACGCATCCTCGGCGGGCTGATCAACGAGTACCGTAACGCCGCCTGA

Upstream 100 bases:

>100_bases
AGCGCCGCGCTACATCCCCGCAACCACGCACGCGCCCCTGCAGCGCGCAGAACCGAGCATGTGGGGCTCCAGAACCCGAT
TTGGGCGGTGACCTGCACGT

Downstream 100 bases:

>100_bases
CGACTCCCACCGAGGACCACGTCAACCGCAAAAGACCAGCTCACAGGCCGAAACCCGGTTTTTGGAGCCCCACAGGACTC
TGTTGCCCTATTGCTGGGCG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MPAERGPRRAGWTAMAWSRLYALTRNALGLMLLRVRGDTSKEVELLVLRHQVAVLRRQVNRPALEPKDRVILTALSRLLP
RARWDVFVVTPATVLRWHRDLLARQWTYRSKKPDRPPIRHEIRELVLRLARENPTWGHRRIQGGLAGLGYPVGVATVWRI
LHHAGVDPAPRRADASWHTFLRAQASGILACDFFAVDTVFLQRIYVFFVVEIATRHVHVHVLGVTKHPTAAWVTQRARTL
LMDLEDRGRRFRFLIRDRDTKFTASFDTVFTAADIDVVRTPPQSPQANAIAERWVGSARRECTDRLLIVSERHLTSVLTS
YAEHFNTHRPHHSLGQHPPDPPPVVAPPLGSTVRRTRILGGLINEYRNAA

Sequences:

>Translated_370_residues
MPAERGPRRAGWTAMAWSRLYALTRNALGLMLLRVRGDTSKEVELLVLRHQVAVLRRQVNRPALEPKDRVILTALSRLLP
RARWDVFVVTPATVLRWHRDLLARQWTYRSKKPDRPPIRHEIRELVLRLARENPTWGHRRIQGGLAGLGYPVGVATVWRI
LHHAGVDPAPRRADASWHTFLRAQASGILACDFFAVDTVFLQRIYVFFVVEIATRHVHVHVLGVTKHPTAAWVTQRARTL
LMDLEDRGRRFRFLIRDRDTKFTASFDTVFTAADIDVVRTPPQSPQANAIAERWVGSARRECTDRLLIVSERHLTSVLTS
YAEHFNTHRPHHSLGQHPPDPPPVVAPPLGSTVRRTRILGGLINEYRNAA
>Mature_369_residues
PAERGPRRAGWTAMAWSRLYALTRNALGLMLLRVRGDTSKEVELLVLRHQVAVLRRQVNRPALEPKDRVILTALSRLLPR
ARWDVFVVTPATVLRWHRDLLARQWTYRSKKPDRPPIRHEIRELVLRLARENPTWGHRRIQGGLAGLGYPVGVATVWRIL
HHAGVDPAPRRADASWHTFLRAQASGILACDFFAVDTVFLQRIYVFFVVEIATRHVHVHVLGVTKHPTAAWVTQRARTLL
MDLEDRGRRFRFLIRDRDTKFTASFDTVFTAADIDVVRTPPQSPQANAIAERWVGSARRECTDRLLIVSERHLTSVLTSY
AEHFNTHRPHHSLGQHPPDPPPVVAPPLGSTVRRTRILGGLINEYRNAA

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42271; Mature: 42140

Theoretical pI: Translated: 11.91; Mature: 11.91

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAERGPRRAGWTAMAWSRLYALTRNALGLMLLRVRGDTSKEVELLVLRHQVAVLRRQVN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
RPALEPKDRVILTALSRLLPRARWDVFVVTPATVLRWHRDLLARQWTYRSKKPDRPPIRH
CCCCCCCHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
EIRELVLRLARENPTWGHRRIQGGLAGLGYPVGVATVWRILHHAGVDPAPRRADASWHTF
HHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
LRAQASGILACDFFAVDTVFLQRIYVFFVVEIATRHVHVHVLGVTKHPTAAWVTQRARTL
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCHHHHHHHHHHHH
LMDLEDRGRRFRFLIRDRDTKFTASFDTVFTAADIDVVRTPPQSPQANAIAERWVGSARR
HHHHHHCCCEEEEEEECCCCEEEEEHHHEEEECCCEEEECCCCCCCHHHHHHHHHHHHHH
ECTDRLLIVSERHLTSVLTSYAEHFNTHRPHHSLGQHPPDPPPVVAPPLGSTVRRTRILG
HHHHHEEEECHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEECCCCCHHHHHHHHHH
GLINEYRNAA
HHHHHHCCCC
>Mature Secondary Structure 
PAERGPRRAGWTAMAWSRLYALTRNALGLMLLRVRGDTSKEVELLVLRHQVAVLRRQVN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
RPALEPKDRVILTALSRLLPRARWDVFVVTPATVLRWHRDLLARQWTYRSKKPDRPPIRH
CCCCCCCHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
EIRELVLRLARENPTWGHRRIQGGLAGLGYPVGVATVWRILHHAGVDPAPRRADASWHTF
HHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
LRAQASGILACDFFAVDTVFLQRIYVFFVVEIATRHVHVHVLGVTKHPTAAWVTQRARTL
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCHHHHHHHHHHHH
LMDLEDRGRRFRFLIRDRDTKFTASFDTVFTAADIDVVRTPPQSPQANAIAERWVGSARR
HHHHHHCCCEEEEEEECCCCEEEEEHHHEEEECCCEEEECCCCCCCHHHHHHHHHHHHHH
ECTDRLLIVSERHLTSVLTSYAEHFNTHRPHHSLGQHPPDPPPVVAPPLGSTVRRTRILG
HHHHHEEEECHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEECCCCCHHHHHHHHHH
GLINEYRNAA
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA