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The map label for this gene is yxjL [H]

Identifier: 158315520

GI number: 158315520

Start: 4411766

End: 4412446

Strand: Reverse

Name: yxjL [H]

Synonym: Franean1_3727

Alternate gene names: 158315520

Gene position: 4412446-4411766 (Counterclockwise)

Preceding gene: 158315521

Following gene: 158315519

Centisome position: 49.13

GC content: 65.79

Gene sequence:

>681_bases
ATGACTATCCGAGTGCTCCTCGCCGACGACCAGACCCTCCTACGAGCGACCTTCCGGATTCTGATCGACTCGTGCGAGGA
CATGGAAGTCGTCGCTGAAGCCGCAGACGGCCACGAAGCCATCGCAGCGGCCCGTGAACACCACCCGGACGTCGTGCTCA
TGGACATCCGCATGCCCGGCACCGACGGACTCGCCGCCACCGCCGCCATCTGCAGCGACGAAACACTCGCCGCCACGCAC
GTCCTCATCCTCACCACCTTCGAAATCGACGAATACGTCACCCAGGCACTTCACGTCGGAGCAAGCGGCTTCCTCGGTAA
AGACGTCGGAACGGACGAGCTCCTCACCGCCATCCGCACCATCGCCGGCGGCGACGCGCTTCTCTCCCCGGCAGCCACCC
GCGCCCTCATCGCCCGGTTCCTCGCCACCCCCGAACCCACAGCCACCGCCAGGACAAACCCCGCAGTCCTCACGACGCTC
ACCGCCCGCGAACGAGAAGTCATGGTGCTGGTAGCCGAGGGCTACTCGAACCACGACATCGCCCGTCGCCTTGTCATCAG
CCCACTGACCGCCCGCACGCACGTCCACCGAGCCATGACAAAACTCGAAGCCCGCGACCGGGCGCAGCTCGTCGTCATCG
CCTACCAGTCCGGCCTGCTACAAACCACCCCATCGGACTGA

Upstream 100 bases:

>100_bases
GTCGGCGGACATCTCGAGGCCGGACACCATCCCGAAGTCGGCTTCCACGTCACCGCCATCCTGCCGCTACAACCCAGAAA
CCCCACGAAAACGGAAAACG

Downstream 100 bases:

>100_bases
CCGCCCCAGAACCTCACAGCCCGGTCGCGGTTCTCTGTACCACCGCACGCTCGATCGACGGGCCGCGCCCAGAGGCCCGC
CTCGCGTCAGCCTTCCCCGG

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MTIRVLLADDQTLLRATFRILIDSCEDMEVVAEAADGHEAIAAAREHHPDVVLMDIRMPGTDGLAATAAICSDETLAATH
VLILTTFEIDEYVTQALHVGASGFLGKDVGTDELLTAIRTIAGGDALLSPAATRALIARFLATPEPTATARTNPAVLTTL
TAREREVMVLVAEGYSNHDIARRLVISPLTARTHVHRAMTKLEARDRAQLVVIAYQSGLLQTTPSD

Sequences:

>Translated_226_residues
MTIRVLLADDQTLLRATFRILIDSCEDMEVVAEAADGHEAIAAAREHHPDVVLMDIRMPGTDGLAATAAICSDETLAATH
VLILTTFEIDEYVTQALHVGASGFLGKDVGTDELLTAIRTIAGGDALLSPAATRALIARFLATPEPTATARTNPAVLTTL
TAREREVMVLVAEGYSNHDIARRLVISPLTARTHVHRAMTKLEARDRAQLVVIAYQSGLLQTTPSD
>Mature_225_residues
TIRVLLADDQTLLRATFRILIDSCEDMEVVAEAADGHEAIAAAREHHPDVVLMDIRMPGTDGLAATAAICSDETLAATHV
LILTTFEIDEYVTQALHVGASGFLGKDVGTDELLTAIRTIAGGDALLSPAATRALIARFLATPEPTATARTNPAVLTTLT
AREREVMVLVAEGYSNHDIARRLVISPLTARTHVHRAMTKLEARDRAQLVVIAYQSGLLQTTPSD

Specific function: Probable member of the two-component regulatory system yxjM/yxjL [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=217, Percent_Identity=29.9539170506912, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1788521, Length=217, Percent_Identity=33.6405529953917, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1787473, Length=212, Percent_Identity=34.4339622641509, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790102, Length=210, Percent_Identity=33.8095238095238, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786747, Length=207, Percent_Identity=25.1207729468599, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1788712, Length=218, Percent_Identity=25.6880733944954, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082052, Length=107, Percent_Identity=31.7757009345794, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24230; Mature: 24099

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRVLLADDQTLLRATFRILIDSCEDMEVVAEAADGHEAIAAAREHHPDVVLMDIRMPG
CEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCC
TDGLAATAAICSDETLAATHVLILTTFEIDEYVTQALHVGASGFLGKDVGTDELLTAIRT
CCCHHHHHHHCCCCHHHHEEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
IAGGDALLSPAATRALIARFLATPEPTATARTNPAVLTTLTAREREVMVLVAEGYSNHDI
HCCCCHHHCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHH
ARRLVISPLTARTHVHRAMTKLEARDRAQLVVIAYQSGLLQTTPSD
HHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECCCCC
>Mature Secondary Structure 
TIRVLLADDQTLLRATFRILIDSCEDMEVVAEAADGHEAIAAAREHHPDVVLMDIRMPG
EEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCC
TDGLAATAAICSDETLAATHVLILTTFEIDEYVTQALHVGASGFLGKDVGTDELLTAIRT
CCCHHHHHHHCCCCHHHHEEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
IAGGDALLSPAATRALIARFLATPEPTATARTNPAVLTTLTAREREVMVLVAEGYSNHDI
HCCCCHHHCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHH
ARRLVISPLTARTHVHRAMTKLEARDRAQLVVIAYQSGLLQTTPSD
HHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]