| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315481
Identifier: 158315481
GI number: 158315481
Start: 4363429
End: 4363986
Strand: Reverse
Name: 158315481
Synonym: Franean1_3686
Alternate gene names: NA
Gene position: 4363986-4363429 (Counterclockwise)
Preceding gene: 158315482
Following gene: 158315480
Centisome position: 48.59
GC content: 68.28
Gene sequence:
>558_bases ATGAGCCAGCCCATCACCACCGAGACGCTCGCCCGACTCGAACGACTGCTCGAGCGGCAGGACATCCATGACACCCTGAC CCGGTTCAGCCGGGGCATGGACCGGTTCGACCGCGAGCTCTTCCTCTCCGCCTTCCATCCCGACGCCGTCATCGCCGCCG GTCCGTTCGTCGGCGGCCCGGTCGAGCTGTACGACTGGGCGTCCGCCGGGCATGAGCAGGGCCAGGTGGCCACCCACCAC AACCTGCTCAACGTCACCATCGACATCGACGGCGACACCGCGCACACCGAGACGTACTACCTGTTCGTCGGGCGCAACCG CGATGACTCCAACTGGATCGCCGGTGGCCGCTACATCGACCGGCTGGAACGGCGCGCGGGCGAATGGCGGATCGCGCTGC GCACCAACGCCATCGAATGGTCGGGCCTGGTGCCCACCATGGAGATCCCGTTCTCCGACGTGCCGGGCATCCACCTCGAC GGCGCTCCCGCCCGCGGCAAGGAGGACCCCTCCTACCGGCGCCCGTTGATCAACACCCGCAAGCCGCAGATTCCCTAG
Upstream 100 bases:
>100_bases GGGTACGGCACGCAGAGCACAGAGCACGCCACCACAACCGCGACCCGCATCTGAACCCCGACGTCGACGCCGACGTCGAC ACACGCCACCGCGAGGGACG
Downstream 100 bases:
>100_bases GCCAGGCCAGGCCGGGGCAGCCCAGGCCAGGGCGGCCGCCGCCCGTTCCACCCTTCGCCAACCACGAGGTGAGCCGGATA TGAGTATCAGTGCCGACGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 185; Mature: 184
Protein sequence:
>185_residues MSQPITTETLARLERLLERQDIHDTLTRFSRGMDRFDRELFLSAFHPDAVIAAGPFVGGPVELYDWASAGHEQGQVATHH NLLNVTIDIDGDTAHTETYYLFVGRNRDDSNWIAGGRYIDRLERRAGEWRIALRTNAIEWSGLVPTMEIPFSDVPGIHLD GAPARGKEDPSYRRPLINTRKPQIP
Sequences:
>Translated_185_residues MSQPITTETLARLERLLERQDIHDTLTRFSRGMDRFDRELFLSAFHPDAVIAAGPFVGGPVELYDWASAGHEQGQVATHH NLLNVTIDIDGDTAHTETYYLFVGRNRDDSNWIAGGRYIDRLERRAGEWRIALRTNAIEWSGLVPTMEIPFSDVPGIHLD GAPARGKEDPSYRRPLINTRKPQIP >Mature_184_residues SQPITTETLARLERLLERQDIHDTLTRFSRGMDRFDRELFLSAFHPDAVIAAGPFVGGPVELYDWASAGHEQGQVATHHN LLNVTIDIDGDTAHTETYYLFVGRNRDDSNWIAGGRYIDRLERRAGEWRIALRTNAIEWSGLVPTMEIPFSDVPGIHLDG APARGKEDPSYRRPLINTRKPQIP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20961; Mature: 20830
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPITTETLARLERLLERQDIHDTLTRFSRGMDRFDRELFLSAFHPDAVIAAGPFVGGP CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC VELYDWASAGHEQGQVATHHNLLNVTIDIDGDTAHTETYYLFVGRNRDDSNWIAGGRYID EEEHHHHCCCCCCCCEEECCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCEEECCHHHH RLERRAGEWRIALRTNAIEWSGLVPTMEIPFSDVPGIHLDGAPARGKEDPSYRRPLINTR HHHHCCCCEEEEEEECEEEECCCCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC KPQIP CCCCC >Mature Secondary Structure SQPITTETLARLERLLERQDIHDTLTRFSRGMDRFDRELFLSAFHPDAVIAAGPFVGGP CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC VELYDWASAGHEQGQVATHHNLLNVTIDIDGDTAHTETYYLFVGRNRDDSNWIAGGRYID EEEHHHHCCCCCCCCEEECCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCEEECCHHHH RLERRAGEWRIALRTNAIEWSGLVPTMEIPFSDVPGIHLDGAPARGKEDPSYRRPLINTR HHHHCCCCEEEEEEECEEEECCCCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC KPQIP CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA