| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158315236
Identifier: 158315236
GI number: 158315236
Start: 4066403
End: 4068013
Strand: Direct
Name: 158315236
Synonym: Franean1_3436
Alternate gene names: NA
Gene position: 4066403-4068013 (Clockwise)
Preceding gene: 158315235
Following gene: 158315240
Centisome position: 45.27
GC content: 66.67
Gene sequence:
>1611_bases ATGGGTGCGCATACGGTGACGGTCAGCGAGGTGCTCGACGGACATGTGGCGCTGGACATCCAGTGCCTGGACCGGATCTA TCTCAACGCCTATGTGCCGATACTCCAGACATCAGGGCAGATGGTGGCGTTCCTGTCCAGCCATCTGGGATATCCGTTTC CGTCGCCAGCGCTGTTCAACCAGATCGGGCAACGGTTCCGACGGGCGGTGAACTCCTACGCCGAGGCCAACGGTATCCCG TGGGTGCGTTTCGGTAAGGACGACGTGGGCGGCAAGCTGGAGGTGATGCGTCCGTACCTGGACCGCCAGGCCGCCACCGG CCGCTCCGGCGTCGCCGCGATCGGGGTGGCCCAGGAGTACCAGCGGGTCTGGACCGCCTACGAACACCACACGACCAGCG GAGCCGTCCAGTGGCGGTTCACCAAAGCCGACCGACGGGTCAGCGTCTACTACTTCTACCTGTGGGACGCCGACTTCGGA CCGGCGTTCGTCAAGGTCTGCACCTACTTTCCCTACCCGGCCAAGATCTGGCTGAACGGGCACGAGTGGGCGAAAAGGCA GGCGGCCCAGGCCGGGATCGGCTTCCGTGAACTGTCCAACGGGTTCGCCGCCACCGACGACCCGCGCGCCTTGCAGGACA TCTGCGACCGGCTCGGACCGGGCACGATCAACGTGTTCGTCCAACGCTGGCTCGCCCGGCTGCCGCTGCCGTTCACCAGC GCCGACCGGGACGCCGGCTACTGGTGGGAGACCTCGATGCGCCAGATCGAGATCTCGCGCACCATGGTGTTCGACGCGCC CCGCCACGCCCGCGGCTTCTTCGAGGCCCTGGTCGCGGACAACCTCGACCTCGGCAGACCGCACAACGTCGAAATCATCT TCAACCGGCTCATCCGCCGAGACACCCGCGGCGTCTTCCGGACCGCGATCGACCGCCGCGACAACGGCGGTGTCATGGTC AACCTGTTCTACAAGCACTCCCGGATCAAGCAGTACCTCAAAGACGGCCGGGCCATGCGCATCGAAACCGTCATCAACGC CCCCCGAGACCTGGGATGCAACGCCCGCCTGCCCAACCTCGAAGAACTGCAGACCAAAGCCCGCGCAGCCAACCACCGGA TCCTGGACGCCGAACGTGTCGGCCAGGGCTGCGTCCTCGCGAGTCCAGCCTTTGGGCGGATCGCACACCCCACCGTCGAC CCCGACGGACAGCGGACCCCCGCCCTGCGGTTCGGTGACCCTCGGGTCATGGCCCTGACCGGAGCCCTCTGCCAGACACT GCTCGCCGCAACCGGCTTCACCAACAAGAACCTGCGTGTCCTGATCGCCGGGCTGCTCGGCAGCGACTACCGCCCCGGAC AGATGACCTACGACCTACGCCGGCTACGCCTGGCCGGCCTCATCCGACGCCTGCCACACAGCAACCGTTACACCCTCACC GGCGAGGGCATCCGCATCGCGGTCTTCTACACCAAGGTCTACAACCGGCTCCTCGTCCCGCTCACCGCCGACCAGCCCCA GGCCCCACCCGAACTCCGCCACGCACTGCGCACCCTCGACCACCACGTCGACAACTACATCGATCACGCCCGTCTCGCAC CCGCGGCCTGA
Upstream 100 bases:
>100_bases GTGAGGCTTCGCCTCGGACCGCCGAGCAGGGTGGTTGGGTTGGTGCTCCTGGTGCTGGTGGGAGCATCCTCACGACCGTA GCCGTGTCAGGAGGCCGGTG
Downstream 100 bases:
>100_bases AACGTGACACAAATCTGAAGACCCTAGCCCAGATCTTTCGCGCCTTGGCCAGGTGCGATCGCGGGCTGGCCTCCCACTCT GTTGATGTTGAGTTTTGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 536; Mature: 535
Protein sequence:
>536_residues MGAHTVTVSEVLDGHVALDIQCLDRIYLNAYVPILQTSGQMVAFLSSHLGYPFPSPALFNQIGQRFRRAVNSYAEANGIP WVRFGKDDVGGKLEVMRPYLDRQAATGRSGVAAIGVAQEYQRVWTAYEHHTTSGAVQWRFTKADRRVSVYYFYLWDADFG PAFVKVCTYFPYPAKIWLNGHEWAKRQAAQAGIGFRELSNGFAATDDPRALQDICDRLGPGTINVFVQRWLARLPLPFTS ADRDAGYWWETSMRQIEISRTMVFDAPRHARGFFEALVADNLDLGRPHNVEIIFNRLIRRDTRGVFRTAIDRRDNGGVMV NLFYKHSRIKQYLKDGRAMRIETVINAPRDLGCNARLPNLEELQTKARAANHRILDAERVGQGCVLASPAFGRIAHPTVD PDGQRTPALRFGDPRVMALTGALCQTLLAATGFTNKNLRVLIAGLLGSDYRPGQMTYDLRRLRLAGLIRRLPHSNRYTLT GEGIRIAVFYTKVYNRLLVPLTADQPQAPPELRHALRTLDHHVDNYIDHARLAPAA
Sequences:
>Translated_536_residues MGAHTVTVSEVLDGHVALDIQCLDRIYLNAYVPILQTSGQMVAFLSSHLGYPFPSPALFNQIGQRFRRAVNSYAEANGIP WVRFGKDDVGGKLEVMRPYLDRQAATGRSGVAAIGVAQEYQRVWTAYEHHTTSGAVQWRFTKADRRVSVYYFYLWDADFG PAFVKVCTYFPYPAKIWLNGHEWAKRQAAQAGIGFRELSNGFAATDDPRALQDICDRLGPGTINVFVQRWLARLPLPFTS ADRDAGYWWETSMRQIEISRTMVFDAPRHARGFFEALVADNLDLGRPHNVEIIFNRLIRRDTRGVFRTAIDRRDNGGVMV NLFYKHSRIKQYLKDGRAMRIETVINAPRDLGCNARLPNLEELQTKARAANHRILDAERVGQGCVLASPAFGRIAHPTVD PDGQRTPALRFGDPRVMALTGALCQTLLAATGFTNKNLRVLIAGLLGSDYRPGQMTYDLRRLRLAGLIRRLPHSNRYTLT GEGIRIAVFYTKVYNRLLVPLTADQPQAPPELRHALRTLDHHVDNYIDHARLAPAA >Mature_535_residues GAHTVTVSEVLDGHVALDIQCLDRIYLNAYVPILQTSGQMVAFLSSHLGYPFPSPALFNQIGQRFRRAVNSYAEANGIPW VRFGKDDVGGKLEVMRPYLDRQAATGRSGVAAIGVAQEYQRVWTAYEHHTTSGAVQWRFTKADRRVSVYYFYLWDADFGP AFVKVCTYFPYPAKIWLNGHEWAKRQAAQAGIGFRELSNGFAATDDPRALQDICDRLGPGTINVFVQRWLARLPLPFTSA DRDAGYWWETSMRQIEISRTMVFDAPRHARGFFEALVADNLDLGRPHNVEIIFNRLIRRDTRGVFRTAIDRRDNGGVMVN LFYKHSRIKQYLKDGRAMRIETVINAPRDLGCNARLPNLEELQTKARAANHRILDAERVGQGCVLASPAFGRIAHPTVDP DGQRTPALRFGDPRVMALTGALCQTLLAATGFTNKNLRVLIAGLLGSDYRPGQMTYDLRRLRLAGLIRRLPHSNRYTLTG EGIRIAVFYTKVYNRLLVPLTADQPQAPPELRHALRTLDHHVDNYIDHARLAPAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60398; Mature: 60267
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAHTVTVSEVLDGHVALDIQCLDRIYLNAYVPILQTSGQMVAFLSSHLGYPFPSPALFN CCCCEEEHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHH QIGQRFRRAVNSYAEANGIPWVRFGKDDVGGKLEVMRPYLDRQAATGRSGVAAIGVAQEY HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHH QRVWTAYEHHTTSGAVQWRFTKADRRVSVYYFYLWDADFGPAFVKVCTYFPYPAKIWLNG HHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCEEEECC HEWAKRQAAQAGIGFRELSNGFAATDDPRALQDICDRLGPGTINVFVQRWLARLPLPFTS HHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC ADRDAGYWWETSMRQIEISRTMVFDAPRHARGFFEALVADNLDLGRPHNVEIIFNRLIRR CCCCCCCEECCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH DTRGVFRTAIDRRDNGGVMVNLFYKHSRIKQYLKDGRAMRIETVINAPRDLGCNARLPNL HHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCCH EELQTKARAANHRILDAERVGQGCVLASPAFGRIAHPTVDPDGQRTPALRFGDPRVMALT HHHHHHHHHHCCCEECHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHH GALCQTLLAATGFTNKNLRVLIAGLLGSDYRPGQMTYDLRRLRLAGLIRRLPHSNRYTLT HHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE GEGIRIAVFYTKVYNRLLVPLTADQPQAPPELRHALRTLDHHVDNYIDHARLAPAA CCCEEEEEEEEHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure GAHTVTVSEVLDGHVALDIQCLDRIYLNAYVPILQTSGQMVAFLSSHLGYPFPSPALFN CCCEEEHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHH QIGQRFRRAVNSYAEANGIPWVRFGKDDVGGKLEVMRPYLDRQAATGRSGVAAIGVAQEY HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEHHHHHHH QRVWTAYEHHTTSGAVQWRFTKADRRVSVYYFYLWDADFGPAFVKVCTYFPYPAKIWLNG HHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCEEEECC HEWAKRQAAQAGIGFRELSNGFAATDDPRALQDICDRLGPGTINVFVQRWLARLPLPFTS HHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC ADRDAGYWWETSMRQIEISRTMVFDAPRHARGFFEALVADNLDLGRPHNVEIIFNRLIRR CCCCCCCEECCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH DTRGVFRTAIDRRDNGGVMVNLFYKHSRIKQYLKDGRAMRIETVINAPRDLGCNARLPNL HHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCCH EELQTKARAANHRILDAERVGQGCVLASPAFGRIAHPTVDPDGQRTPALRFGDPRVMALT HHHHHHHHHHCCCEECHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHH GALCQTLLAATGFTNKNLRVLIAGLLGSDYRPGQMTYDLRRLRLAGLIRRLPHSNRYTLT HHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE GEGIRIAVFYTKVYNRLLVPLTADQPQAPPELRHALRTLDHHVDNYIDHARLAPAA CCCEEEEEEEEHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA