| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315219
Identifier: 158315219
GI number: 158315219
Start: 4049067
End: 4049702
Strand: Direct
Name: 158315219
Synonym: Franean1_3419
Alternate gene names: NA
Gene position: 4049067-4049702 (Clockwise)
Preceding gene: 158315217
Following gene: 158315220
Centisome position: 45.08
GC content: 69.34
Gene sequence:
>636_bases GTGCGGGAAATAGCCGAGAAGGCGGGCGCGTCGAAGCCTACCGTGCGGCTGTGGCTGTCGCGCTATGACGAGGAGGGGCC GGACGGCTTGGTGAGCCGGGTGTCCCCGGGGCGGCCACGGGAGGTCCCGGGTCGGGTACGGGCGCGGATCCTGGCGTTGA CCAGGACCACCCCTCCGCCGGAGACCGGACTGAGCCACTGGACGAGCACCGAGATGGCGCGGTACCTGAAGCGCCGCGAA GGAGTGTCGGTCTCGCACACCTTCGTGGCCCAGTTGTGGCGGGAGAACAATCTCCAGCCGCACCGGCACCGAGTCTTCAA GCTCTCGGCGGACCCGGATTTCGAGGCCAAGGTGAAGGACGCCGTCGGCCTCTACCTCGATCCCCCCGAGGGCGCCGAGG TGCTGTCGATCGACGAAAAGCCTGGGGTGCAGGCACTCGACCGGACGCAGCCACCGCGGCCGGTCGCCTCCGGCCGGGTC GCCACCCGCACGCACGACTACCAGCGGAAGGGCACGACCGACCTGTTCGCCGCCCTCGACGTCGGGACGGGGCGGGTCAC CGCCAGGTGCTTCCCCAGCCACACCAGGGCCGATTTCCTCACGTTCATGGACCCTCGACTTTCGCACTTTCCTTGA
Upstream 100 bases:
>100_bases GATATTCTCGCGTCCTTGGCTGGAGGCGGTGGGTACGACGTACGACAGGTCTGCGGCTGCCCGCGCCCGTATGGTGCTAT GGCGGGACGAAGGATTCTCA
Downstream 100 bases:
>100_bases TTGCCGGTAGTGGTGTGTCGAGGTTAATTGAGTTCGCTCTTTGAACGAAGGAGAATCCGTGGGCGGTGTCCGAGCGTGGC ACCGTGCGGCGCGTCGAAAA
Product: putative transposase
Products: NA
Alternate protein names: Integrase Catalytic Region; ISRSO5-Transposase Protein; Feruloyl Esterase; ISMsm2 Transposase; Isrso5-Transposase Protein; ISMsm5 Transposase; Integrase Catalytic Subunit; Aminoglycoside Phosphotransferase; ISPsy1 Transposase; Inactivated Transposase; ISPsy25 Transposase; ISBmu8 Transposase; Transposase Of
Number of amino acids: Translated: 211; Mature: 211
Protein sequence:
>211_residues MREIAEKAGASKPTVRLWLSRYDEEGPDGLVSRVSPGRPREVPGRVRARILALTRTTPPPETGLSHWTSTEMARYLKRRE GVSVSHTFVAQLWRENNLQPHRHRVFKLSADPDFEAKVKDAVGLYLDPPEGAEVLSIDEKPGVQALDRTQPPRPVASGRV ATRTHDYQRKGTTDLFAALDVGTGRVTARCFPSHTRADFLTFMDPRLSHFP
Sequences:
>Translated_211_residues MREIAEKAGASKPTVRLWLSRYDEEGPDGLVSRVSPGRPREVPGRVRARILALTRTTPPPETGLSHWTSTEMARYLKRRE GVSVSHTFVAQLWRENNLQPHRHRVFKLSADPDFEAKVKDAVGLYLDPPEGAEVLSIDEKPGVQALDRTQPPRPVASGRV ATRTHDYQRKGTTDLFAALDVGTGRVTARCFPSHTRADFLTFMDPRLSHFP >Mature_211_residues MREIAEKAGASKPTVRLWLSRYDEEGPDGLVSRVSPGRPREVPGRVRARILALTRTTPPPETGLSHWTSTEMARYLKRRE GVSVSHTFVAQLWRENNLQPHRHRVFKLSADPDFEAKVKDAVGLYLDPPEGAEVLSIDEKPGVQALDRTQPPRPVASGRV ATRTHDYQRKGTTDLFAALDVGTGRVTARCFPSHTRADFLTFMDPRLSHFP
Specific function: Unknown
COG id: COG3335
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23673; Mature: 23673
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: PS00228 TUBULIN_B_AUTOREG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREIAEKAGASKPTVRLWLSRYDEEGPDGLVSRVSPGRPREVPGRVRARILALTRTTPPP CCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHHHHEEEEEECCCCCC ETGLSHWTSTEMARYLKRREGVSVSHTFVAQLWRENNLQPHRHRVFKLSADPDFEAKVKD CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH AVGLYLDPPEGAEVLSIDEKPGVQALDRTQPPRPVASGRVATRTHDYQRKGTTDLFAALD CCCEEECCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHCCCHHHHHEEE VGTGRVTARCFPSHTRADFLTFMDPRLSHFP CCCCCEEEEECCCCCHHHHHHHCCCHHCCCC >Mature Secondary Structure MREIAEKAGASKPTVRLWLSRYDEEGPDGLVSRVSPGRPREVPGRVRARILALTRTTPPP CCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHHHHEEEEEECCCCCC ETGLSHWTSTEMARYLKRREGVSVSHTFVAQLWRENNLQPHRHRVFKLSADPDFEAKVKD CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH AVGLYLDPPEGAEVLSIDEKPGVQALDRTQPPRPVASGRVATRTHDYQRKGTTDLFAALD CCCEEECCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCEEECCCCCHHHCCCHHHHHEEE VGTGRVTARCFPSHTRADFLTFMDPRLSHFP CCCCCEEEEECCCCCHHHHHHHCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA