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The map label for this gene is hupD [H]

Identifier: 158315206

GI number: 158315206

Start: 4037626

End: 4038201

Strand: Direct

Name: hupD [H]

Synonym: Franean1_3406

Alternate gene names: 158315206

Gene position: 4037626-4038201 (Clockwise)

Preceding gene: 158315205

Following gene: 158315207

Centisome position: 44.95

GC content: 74.83

Gene sequence:

>576_bases
GTGACGGACCCGGCCGACCTCCGGGCGTCCACCACCCCGACGGACGCCCCCGTTCTGGTGCTGGGGATCGGCAACGAGCT
GCTCGGCGACGACGGCGTCGGCGTGGTCGCCGCCCGGCGGCTCGGCGCGCCGCCGATCCCCGGGGTCGACGTCCTCGACG
GCGGGACGCTCGGGCTGATGCTCATGCCCTACCTGGCGGGCCGCGACGCGGTCCTCATCCTCGACGCCGTCTCCACCGCC
CACGGGCGGCCCGGCGATGTCATCGTCATCCCCGACGGGGACGTCCGCCGCGGCCACGGCGTGCGCGCCACCGCCCACGA
CATCGGTCTCGTCGACGCGCTGGCCGCCACCGAGCTCGCCGGCTGCGCCCCCCGGCACGTCGCCCTGGTGGGCGTCGTGC
CCGAATCCGTCACCGAACGCTGGGGCCTGAGCCCCCTGCTCGAATCCCGCGTGGGCGCGCTGGTCGACGCGGCCCGCTCC
GTCCTCGCCGAATGGTCGGTGCTCGCCGAAGAGTCCGTGCTCGCCGAAGAGTCCGTGCTCGCCGAACAGAAGGTGCAGGT
ACCCGGACATGCATGA

Upstream 100 bases:

>100_bases
TCCACCATCTCTACAGCGCCATCCTGGTCGACCGGGTGGAGGGCACCGGCGTCCTGACCTCGATCTTCTCCGGCCACAAG
TTCCTCCCGAAGGACCACCT

Downstream 100 bases:

>100_bases
GGCCGGCCTCGCCCGCTCCGCGGTCAGCGCCATCGCCGAGGCCAGCGAGGGAACCCCGGTGCGGACGGTGGTTCTCGCCG
CCGCGGCCGGCGTCGACATC

Product: hydrogenase maturation protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MTDPADLRASTTPTDAPVLVLGIGNELLGDDGVGVVAARRLGAPPIPGVDVLDGGTLGLMLMPYLAGRDAVLILDAVSTA
HGRPGDVIVIPDGDVRRGHGVRATAHDIGLVDALAATELAGCAPRHVALVGVVPESVTERWGLSPLLESRVGALVDAARS
VLAEWSVLAEESVLAEESVLAEQKVQVPGHA

Sequences:

>Translated_191_residues
MTDPADLRASTTPTDAPVLVLGIGNELLGDDGVGVVAARRLGAPPIPGVDVLDGGTLGLMLMPYLAGRDAVLILDAVSTA
HGRPGDVIVIPDGDVRRGHGVRATAHDIGLVDALAATELAGCAPRHVALVGVVPESVTERWGLSPLLESRVGALVDAARS
VLAEWSVLAEESVLAEESVLAEQKVQVPGHA
>Mature_190_residues
TDPADLRASTTPTDAPVLVLGIGNELLGDDGVGVVAARRLGAPPIPGVDVLDGGTLGLMLMPYLAGRDAVLILDAVSTAH
GRPGDVIVIPDGDVRRGHGVRATAHDIGLVDALAATELAGCAPRHVALVGVVPESVTERWGLSPLLESRVGALVDAARSV
LAEWSVLAEESVLAEESVLAEQKVQVPGHA

Specific function: Not known. Could be involved in the processing of hydrogenase [H]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

Organism=Escherichia coli, GI1789367, Length=154, Percent_Identity=35.0649350649351, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004419
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 19500; Mature: 19368

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPADLRASTTPTDAPVLVLGIGNELLGDDGVGVVAARRLGAPPIPGVDVLDGGTLGLM
CCCCCCCCCCCCCCCCCEEEEECCCHHCCCCCCHHHHHHHCCCCCCCCCEEECCCCHHHH
LMPYLAGRDAVLILDAVSTAHGRPGDVIVIPDGDVRRGHGVRATAHDIGLVDALAATELA
HHHHHCCCCEEEEEEEHHHCCCCCCCEEEECCCCCCCCCCCEECHHHHHHHHHHHHHHHH
GCAPRHVALVGVVPESVTERWGLSPLLESRVGALVDAARSVLAEWSVLAEESVLAEESVL
CCCCCEEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEQKVQVPGHA
HHHHCCCCCCC
>Mature Secondary Structure 
TDPADLRASTTPTDAPVLVLGIGNELLGDDGVGVVAARRLGAPPIPGVDVLDGGTLGLM
CCCCCCCCCCCCCCCCEEEEECCCHHCCCCCCHHHHHHHCCCCCCCCCEEECCCCHHHH
LMPYLAGRDAVLILDAVSTAHGRPGDVIVIPDGDVRRGHGVRATAHDIGLVDALAATELA
HHHHHCCCCEEEEEEEHHHCCCCCCCEEEECCCCCCCCCCCEECHHHHHHHHHHHHHHHH
GCAPRHVALVGVVPESVTERWGLSPLLESRVGALVDAARSVLAEWSVLAEESVLAEESVL
CCCCCEEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEQKVQVPGHA
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8230232; 8163174; 12597275 [H]