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The map label for this gene is hupC [H]

Identifier: 158315205

GI number: 158315205

Start: 4036943

End: 4037629

Strand: Direct

Name: hupC [H]

Synonym: Franean1_3405

Alternate gene names: 158315205

Gene position: 4036943-4037629 (Clockwise)

Preceding gene: 158315204

Following gene: 158315206

Centisome position: 44.94

GC content: 67.25

Gene sequence:

>687_bases
GTGAGCGTGACCGCGCCCGCCCCGCACACCGAGCACGCGGAGCTCGTCCGGTTCCGGGTCTGGGATCTTCCGGTCCGCCT
CATCCACTGGCTGCTGGTGCTGGACCTCGTCGCCCTGTCCGTCACCGGCTACCTCATCGGGAACCCGGACATCCACCCGG
GCGGCCACGTCTACTGGGTCACCTGGACGAGGAGCATCCACAAGGTCACCGCGTACGTCTTCATCGCACTCATCCTGGCC
CGGGTCGGCTGGCACATCCGCTCGCCCAACCCCTGGTCACGGTGGACGGAGTGGATACCCAGCACCCGGGAGCGGCTCGG
CCAGATCGTCCCGTCGGTGCGCTTCTACACGTTCCTCTCCCGGGAGGCACCCCCGGTCATCGGCCACAATCCGCTCGCCG
GCCTCACCTACACCGTGCTTTACACGATGTTCGGGGTCGAGATCGTCACCGGTCTGGTGCTGTGGGGCGTGGAGGGCACC
GGCTGGGCGGCCTGGCTCACCGGCTGGCTGCTCCACGTGGTGTCACTGCCGACGCTCCGGCTCGTCCACCACCTGATCAT
GTGGCTCACCTGGGGATTCATGATCCACCATCTCTACAGCGCCATCCTGGTCGACCGGGTGGAGGGCACCGGCGTCCTGA
CCTCGATCTTCTCCGGCCACAAGTTCCTCCCGAAGGACCACCTGTGA

Upstream 100 bases:

>100_bases
TGGAGATCCTGCGCACCCTGCACTCCTTCGACCCCTGCATGGCCTGCGCGGCGCACATCTACGACGTCGAGGGCCGCGAC
ATCATCGAGGTGCGGGTCCA

Downstream 100 bases:

>100_bases
CGGACCCGGCCGACCTCCGGGCGTCCACCACCCCGACGGACGCCCCCGTTCTGGTGCTGGGGATCGGCAACGAGCTGCTC
GGCGACGACGGCGTCGGCGT

Product: Ni/Fe-hydrogenase, b-type cytochrome subunit

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSVTAPAPHTEHAELVRFRVWDLPVRLIHWLLVLDLVALSVTGYLIGNPDIHPGGHVYWVTWTRSIHKVTAYVFIALILA
RVGWHIRSPNPWSRWTEWIPSTRERLGQIVPSVRFYTFLSREAPPVIGHNPLAGLTYTVLYTMFGVEIVTGLVLWGVEGT
GWAAWLTGWLLHVVSLPTLRLVHHLIMWLTWGFMIHHLYSAILVDRVEGTGVLTSIFSGHKFLPKDHL

Sequences:

>Translated_228_residues
MSVTAPAPHTEHAELVRFRVWDLPVRLIHWLLVLDLVALSVTGYLIGNPDIHPGGHVYWVTWTRSIHKVTAYVFIALILA
RVGWHIRSPNPWSRWTEWIPSTRERLGQIVPSVRFYTFLSREAPPVIGHNPLAGLTYTVLYTMFGVEIVTGLVLWGVEGT
GWAAWLTGWLLHVVSLPTLRLVHHLIMWLTWGFMIHHLYSAILVDRVEGTGVLTSIFSGHKFLPKDHL
>Mature_227_residues
SVTAPAPHTEHAELVRFRVWDLPVRLIHWLLVLDLVALSVTGYLIGNPDIHPGGHVYWVTWTRSIHKVTAYVFIALILAR
VGWHIRSPNPWSRWTEWIPSTRERLGQIVPSVRFYTFLSREAPPVIGHNPLAGLTYTVLYTMFGVEIVTGLVLWGVEGTG
WAAWLTGWLLHVVSLPTLRLVHHLIMWLTWGFMIHHLYSAILVDRVEGTGVLTSIFSGHKFLPKDHL

Specific function: B-type cytochrome involved in electron transfer from hydrogenase to oxygen [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=225, Percent_Identity=29.3333333333333, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 26009; Mature: 25878

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTAPAPHTEHAELVRFRVWDLPVRLIHWLLVLDLVALSVTGYLIGNPDIHPGGHVYWV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEE
TWTRSIHKVTAYVFIALILARVGWHIRSPNPWSRWTEWIPSTRERLGQIVPSVRFYTFLS
EEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
REAPPVIGHNPLAGLTYTVLYTMFGVEIVTGLVLWGVEGTGWAAWLTGWLLHVVSLPTLR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHH
LVHHLIMWLTWGFMIHHLYSAILVDRVEGTGVLTSIFSGHKFLPKDHL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SVTAPAPHTEHAELVRFRVWDLPVRLIHWLLVLDLVALSVTGYLIGNPDIHPGGHVYWV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEE
TWTRSIHKVTAYVFIALILARVGWHIRSPNPWSRWTEWIPSTRERLGQIVPSVRFYTFLS
EEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
REAPPVIGHNPLAGLTYTVLYTMFGVEIVTGLVLWGVEGTGWAAWLTGWLLHVVSLPTLR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHH
LVHHLIMWLTWGFMIHHLYSAILVDRVEGTGVLTSIFSGHKFLPKDHL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8230232; 8163174; 12597275; 3054886 [H]