| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is cocE [H]
Identifier: 158315034
GI number: 158315034
Start: 3815700
End: 3817466
Strand: Direct
Name: cocE [H]
Synonym: Franean1_3229
Alternate gene names: 158315034
Gene position: 3815700-3817466 (Clockwise)
Preceding gene: 158315033
Following gene: 158315046
Centisome position: 42.48
GC content: 68.14
Gene sequence:
>1767_bases ATGAGTTACCGAGTCGAGAAGAACGTCATGGTTCCGATGCGGGACGACGTGACGTTATGCACGGATCTCTTCCTGCCGGA AGGCGGGCCCGCGCCGGCGCTCATAATCCGGATGGGCTACAGCAAGGAGATGTTCGAGAAGTTGTCCCTGCCGCTGATCC CGAACGTCCTCTCGCTGGTCGAGGCCGGCTACGCGATCGTTTACCAGGAGTGCCGCGGCACCTACGGCTCCGGGGGCGTC TTCCGGCCGCTCGTGGATGACCCGGACGACGGCGTCGACACGCTCGAATGGACGGTGAAACAGCCGTGGTGCGACGGGAA CGTCGGCAGCTACGGGCTGTCATACCACGGCATGACCCAGTGGGCGACGGCCTCACAGGCCCCCTCCGGGCTGAAGGCGA TGGCAGTGGCGGCCTCGACGACGGACCTCTTCCGCGCCCCGTGGTACAGCGACGGCGGTGCCGTGTCCTGGCAGATGACT CTGGGCTGGGTGGCGGCCCAGATCGTCACGCTGGGCCAGTACGCGCTCGAGCGCGGCACAGGTGACCTCGAGCCGCTGGT CGACGCGGGCGCGATGATGCTCGACCTGGAGCCGCACCTGCGCAAGCTCCCGATCACCGATCAGCCAGCGCTGAACAAGC ATGCGCCCTGGTGGAAGGAATGGTGGGAGCACCCCACCCGCGACGAGTTCTGGACCGGCCTGGCGACGGCCGAACACACC CGGGACATGACGACTCCGGCGCTGCACATCGTCGGCTGGTTCGACTTCTTCGCGCCCGAGGCGACGCGTGCCTACACCCG AATGCGTGCCCAGGCAGCCACGCCACAGGCACGGGAGGGCCAGCGGCTGATCGTAGGCCCCTGGGACCACACCTACCAGG ATGCCGCCTACCGGTCCCGCGAGTTCGGCCAGCTGGCCGGCGCACCGTACGCCGACATCACCGGCGCGCACCTGCGGTTC TTCGACCGGCACCTGCGCGGCAACAACAGCGCCGACGTCGGCGCAAGCCCAGTACGGATCTTCGTGATGGGTGTGGACCA GTGGCGGGATGAGCAGGACTGGCCACTGCCCGACACCACCTACGTCGACTACTACCTGGACGGGCCCGGCCGCGCGAACA CCGCCGACGGCGACGGCGTGCTCACGACCGAGGCCCCCACCACCGAGGCGGCCGAGTCCTACCGCTTCGACCCGCTCGAT CCGGTGCCGACGCTGGGCGGCCGGCTCAACCAGATGGGTTTCGGTTTCTCCGCTCTGTACTCGGGGCCGGTCGACCAGCG CCCAGTCGAAGAGCGCAACGACGTTCTGTGCTTCACCACGCCGGTGCTGGAGGAGCCGGTCGAGGTCACCGGGAACATAT CGCTGGTGCTGCATGCGTCGAGCTCCGCGCTGGACACCGACTTCACCGGCAAGCTCGTCGACGTCCACCCCGACGGCCGG GCGCTCTACCTGACCGACGGCATCCTGCGTGCCCGCTACCGCGAGTCGCTGGCCAACCCGAAGCCACTCGTGCCCGGCGA GGTCTACGAGCTCATCCTCGACCTCGGCCTGACCTCCAACGTCTTCCTGCCTGGCCACCGCATCCGGCTCGAGGTCTCCT CCAGCAACTTCCCGCGCTACGACCGGAACACAAATACCGGCAACGTGATCTCCTTCGACACGGCCACCCCGGTCGTCGCG GGAAACCAGATCCTCCACGGCCCGGCGCATCCCAGCCGGCTCGTTCTGCCGATCATCCGGCGCCTGCGGACCGACCGACA CGGCTGA
Upstream 100 bases:
>100_bases CGCTGAGATCCGCCGGTTCTGCGCCGCTCACTGGGCGGCTGACGCGGCCTGATCGGGACCGCGTTTCATGACAATCCCGC GAGCATGCAAAGGAGAAGCT
Downstream 100 bases:
>100_bases GGAACCTAGCTCCCCGTGCTGTTGGCGCAGAGGCGTTCCCGGGTGACCTGGAACGCCGAGCCGGTCTGGTCGATCTGCAC GAAGGCGTTGCATTCGAGGA
Product: X-Pro dipeptidyl-peptidase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 588; Mature: 587
Protein sequence:
>588_residues MSYRVEKNVMVPMRDDVTLCTDLFLPEGGPAPALIIRMGYSKEMFEKLSLPLIPNVLSLVEAGYAIVYQECRGTYGSGGV FRPLVDDPDDGVDTLEWTVKQPWCDGNVGSYGLSYHGMTQWATASQAPSGLKAMAVAASTTDLFRAPWYSDGGAVSWQMT LGWVAAQIVTLGQYALERGTGDLEPLVDAGAMMLDLEPHLRKLPITDQPALNKHAPWWKEWWEHPTRDEFWTGLATAEHT RDMTTPALHIVGWFDFFAPEATRAYTRMRAQAATPQAREGQRLIVGPWDHTYQDAAYRSREFGQLAGAPYADITGAHLRF FDRHLRGNNSADVGASPVRIFVMGVDQWRDEQDWPLPDTTYVDYYLDGPGRANTADGDGVLTTEAPTTEAAESYRFDPLD PVPTLGGRLNQMGFGFSALYSGPVDQRPVEERNDVLCFTTPVLEEPVEVTGNISLVLHASSSALDTDFTGKLVDVHPDGR ALYLTDGILRARYRESLANPKPLVPGEVYELILDLGLTSNVFLPGHRIRLEVSSSNFPRYDRNTNTGNVISFDTATPVVA GNQILHGPAHPSRLVLPIIRRLRTDRHG
Sequences:
>Translated_588_residues MSYRVEKNVMVPMRDDVTLCTDLFLPEGGPAPALIIRMGYSKEMFEKLSLPLIPNVLSLVEAGYAIVYQECRGTYGSGGV FRPLVDDPDDGVDTLEWTVKQPWCDGNVGSYGLSYHGMTQWATASQAPSGLKAMAVAASTTDLFRAPWYSDGGAVSWQMT LGWVAAQIVTLGQYALERGTGDLEPLVDAGAMMLDLEPHLRKLPITDQPALNKHAPWWKEWWEHPTRDEFWTGLATAEHT RDMTTPALHIVGWFDFFAPEATRAYTRMRAQAATPQAREGQRLIVGPWDHTYQDAAYRSREFGQLAGAPYADITGAHLRF FDRHLRGNNSADVGASPVRIFVMGVDQWRDEQDWPLPDTTYVDYYLDGPGRANTADGDGVLTTEAPTTEAAESYRFDPLD PVPTLGGRLNQMGFGFSALYSGPVDQRPVEERNDVLCFTTPVLEEPVEVTGNISLVLHASSSALDTDFTGKLVDVHPDGR ALYLTDGILRARYRESLANPKPLVPGEVYELILDLGLTSNVFLPGHRIRLEVSSSNFPRYDRNTNTGNVISFDTATPVVA GNQILHGPAHPSRLVLPIIRRLRTDRHG >Mature_587_residues SYRVEKNVMVPMRDDVTLCTDLFLPEGGPAPALIIRMGYSKEMFEKLSLPLIPNVLSLVEAGYAIVYQECRGTYGSGGVF RPLVDDPDDGVDTLEWTVKQPWCDGNVGSYGLSYHGMTQWATASQAPSGLKAMAVAASTTDLFRAPWYSDGGAVSWQMTL GWVAAQIVTLGQYALERGTGDLEPLVDAGAMMLDLEPHLRKLPITDQPALNKHAPWWKEWWEHPTRDEFWTGLATAEHTR DMTTPALHIVGWFDFFAPEATRAYTRMRAQAATPQAREGQRLIVGPWDHTYQDAAYRSREFGQLAGAPYADITGAHLRFF DRHLRGNNSADVGASPVRIFVMGVDQWRDEQDWPLPDTTYVDYYLDGPGRANTADGDGVLTTEAPTTEAAESYRFDPLDP VPTLGGRLNQMGFGFSALYSGPVDQRPVEERNDVLCFTTPVLEEPVEVTGNISLVLHASSSALDTDFTGKLVDVHPDGRA LYLTDGILRARYRESLANPKPLVPGEVYELILDLGLTSNVFLPGHRIRLEVSSSNFPRYDRNTNTGNVISFDTATPVVAG NQILHGPAHPSRLVLPIIRRLRTDRHG
Specific function: Hydrolyzes cocaine to benzoate and ecgonine methyl ester, endowing the bacteria with the ability to utilize cocaine as a sole source of carbon and energy for growth, as this bacterium lives in the rhizosphere of coca plants [H]
COG id: COG2936
COG function: function code R; Predicted acyl esterases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the alpha/beta hydrolase family. Carboxylesterase subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005674 - InterPro: IPR008979 - InterPro: IPR013736 - InterPro: IPR000383 [H]
Pfam domain/function: PF02129 Peptidase_S15; PF08530 PepX_C [H]
EC number: NA
Molecular weight: Translated: 65080; Mature: 64949
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYRVEKNVMVPMRDDVTLCTDLFLPEGGPAPALIIRMGYSKEMFEKLSLPLIPNVLSLV CCEEECCCEEEECCCCCEEHHHEECCCCCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHH EAGYAIVYQECRGTYGSGGVFRPLVDDPDDGVDTLEWTVKQPWCDGNVGSYGLSYHGMTQ HCCHHEEEHHHCCCCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEECCCHH WATASQAPSGLKAMAVAASTTDLFRAPWYSDGGAVSWQMTLGWVAAQIVTLGQYALERGT HCCCCCCCCCCEEEEEEECCHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCC GDLEPLVDAGAMMLDLEPHLRKLPITDQPALNKHAPWWKEWWEHPTRDEFWTGLATAEHT CCCCHHHHCCEEEEECCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCHHHHHH RDMTTPALHIVGWFDFFAPEATRAYTRMRAQAATPQAREGQRLIVGPWDHTYQDAAYRSR CCCCCCHHHEEHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHH EFGQLAGAPYADITGAHLRFFDRHLRGNNSADVGASPVRIFVMGVDQWRDEQDWPLPDTT HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHHCCCCCCCCCCCE YVDYYLDGPGRANTADGDGVLTTEAPTTEAAESYRFDPLDPVPTLGGRLNQMGFGFSALY EEEEEECCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHH SGPVDQRPVEERNDVLCFTTPVLEEPVEVTGNISLVLHASSSALDTDFTGKLVDVHPDGR CCCCCCCCCHHCCCEEEEECHHHCCCCEECCCEEEEEEECCCCCCCCCCCCEEEECCCCC ALYLTDGILRARYRESLANPKPLVPGEVYELILDLGLTSNVFLPGHRIRLEVSSSNFPRY EEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCCCC DRNTNTGNVISFDTATPVVAGNQILHGPAHPSRLVLPIIRRLRTDRHG CCCCCCCCEEEECCCCCEEECCCEEECCCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure SYRVEKNVMVPMRDDVTLCTDLFLPEGGPAPALIIRMGYSKEMFEKLSLPLIPNVLSLV CEEECCCEEEECCCCCEEHHHEECCCCCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHH EAGYAIVYQECRGTYGSGGVFRPLVDDPDDGVDTLEWTVKQPWCDGNVGSYGLSYHGMTQ HCCHHEEEHHHCCCCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEECCCHH WATASQAPSGLKAMAVAASTTDLFRAPWYSDGGAVSWQMTLGWVAAQIVTLGQYALERGT HCCCCCCCCCCEEEEEEECCHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCC GDLEPLVDAGAMMLDLEPHLRKLPITDQPALNKHAPWWKEWWEHPTRDEFWTGLATAEHT CCCCHHHHCCEEEEECCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCHHHHHH RDMTTPALHIVGWFDFFAPEATRAYTRMRAQAATPQAREGQRLIVGPWDHTYQDAAYRSR CCCCCCHHHEEHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHH EFGQLAGAPYADITGAHLRFFDRHLRGNNSADVGASPVRIFVMGVDQWRDEQDWPLPDTT HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHHCCCCCCCCCCCE YVDYYLDGPGRANTADGDGVLTTEAPTTEAAESYRFDPLDPVPTLGGRLNQMGFGFSALY EEEEEECCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHH SGPVDQRPVEERNDVLCFTTPVLEEPVEVTGNISLVLHASSSALDTDFTGKLVDVHPDGR CCCCCCCCCHHCCCEEEEECHHHCCCCEECCCEEEEEEECCCCCCCCCCCCEEEECCCCC ALYLTDGILRARYRESLANPKPLVPGEVYELILDLGLTSNVFLPGHRIRLEVSSSNFPRY EEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCCCC DRNTNTGNVISFDTATPVVAGNQILHGPAHPSRLVLPIIRRLRTDRHG CCCCCCCCEEEECCCCCEEECCCEEECCCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10698749; 11742345; 12369817 [H]