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The map label for this gene is rbsR [H]

Identifier: 158315000

GI number: 158315000

Start: 3771391

End: 3772386

Strand: Direct

Name: rbsR [H]

Synonym: Franean1_3194

Alternate gene names: 158315000

Gene position: 3771391-3772386 (Clockwise)

Preceding gene: 158314992

Following gene: 158315001

Centisome position: 41.99

GC content: 71.29

Gene sequence:

>996_bases
GTGTCAGAGGCGACGGCGAAGCGAAGGGTCACCGCCACGGATGTTGCCGCTGTCGCAGGGGTTTCGCGGGCGACGGTGGG
CTTCGTCCTCAACCGGACCCGCGGGCAGACGATCTCGGAGGGCACCCGCGAGCGGGTGCTCGAAGCGGCGCTGCGCCTCG
GCTACCGGCCGAACAGCGCCGCCCAGGCCCTCGCCAGCGGCCGCAGCAGGATCGTCCTGTTCGTCCTGCCGGACTGGCCC
GTCGAGTACACCTTCCGGATCTACCTCGACGAGGCGTCCCGCGTCCTGGACGAGGCCGGTTACTCGCTCGTCACCTACAC
CCGCCGGCCCCACGGCGAGAACCGTCCCCTCTGGGAGCTCCTGACCCCGGACAGCGTCTTCGGGTTCACCACCTTCAGCC
CGGACGAGATCGCCTCGATGCGCGGCTGCGGGATCCGCCGGATCTTCCCGGACCCGGCCCGGCAGGAACCCCTCGACCTC
TCCCTCGCTGTGAGTGCGGGGCCCCGTCTCCAGGTCGAGCACCTGCACGAACACGGCCGCCGCCACCTCGCGTACGCCGC
CTTCGCCGACCCCCGCCCGTCCTCCCTCGTCCAGGCCCGCCACGACGCGGCCCGGGAACGAGCACGCGCCCTCGACCTGC
CGCCCGTCGACATCAGGTACATCGACTACCGCGACGGATCCGCCGACGACGCGGTCCGTGCCTGGCACAGCGCCGGAGTG
ACCGGCGTCGTCGCCTTCAACGACGACGTCGCCGCCGCCATCGTCAGCGCCGCGATCCGCCTCGGGATACGGATACCCGA
CGACCTCGCCGTCATCGGCCACGACGACAGCCCCATAGCGACAATGTTCGTCCCCGCGCTTTCCACTGTCCGGTTCGACA
CCGCCACCCTCGGCCGCGGATTCGCCGAATACGCCATCCACCAGACAGAAGGCCGGCCCCTGCCGGACTGGCGGCCCCCG
GTGAGCGCCACCCTCGTCCGCCGCGAATCAACTTAG

Upstream 100 bases:

>100_bases
GGGTGCCCCAGGCCACTAGCACGTACTAGCATCGTGGGTAGACAAGCTAACATCGTGCTGTTAGCGCGCGCAAGTGGGCC
CGAGTGAGGGGGCGGCGGCC

Downstream 100 bases:

>100_bases
TTCTATACGACGGGCTATCGGCCTGTCGTTTCAACCCGCCCGGTGCGGGATGGTGCGCGGCAACAAGTGGCAACCGCTTG
CTCGGCCCGTCCGTCGACAG

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSEATAKRRVTATDVAAVAGVSRATVGFVLNRTRGQTISEGTRERVLEAALRLGYRPNSAAQALASGRSRIVLFVLPDWP
VEYTFRIYLDEASRVLDEAGYSLVTYTRRPHGENRPLWELLTPDSVFGFTTFSPDEIASMRGCGIRRIFPDPARQEPLDL
SLAVSAGPRLQVEHLHEHGRRHLAYAAFADPRPSSLVQARHDAARERARALDLPPVDIRYIDYRDGSADDAVRAWHSAGV
TGVVAFNDDVAAAIVSAAIRLGIRIPDDLAVIGHDDSPIATMFVPALSTVRFDTATLGRGFAEYAIHQTEGRPLPDWRPP
VSATLVRREST

Sequences:

>Translated_331_residues
MSEATAKRRVTATDVAAVAGVSRATVGFVLNRTRGQTISEGTRERVLEAALRLGYRPNSAAQALASGRSRIVLFVLPDWP
VEYTFRIYLDEASRVLDEAGYSLVTYTRRPHGENRPLWELLTPDSVFGFTTFSPDEIASMRGCGIRRIFPDPARQEPLDL
SLAVSAGPRLQVEHLHEHGRRHLAYAAFADPRPSSLVQARHDAARERARALDLPPVDIRYIDYRDGSADDAVRAWHSAGV
TGVVAFNDDVAAAIVSAAIRLGIRIPDDLAVIGHDDSPIATMFVPALSTVRFDTATLGRGFAEYAIHQTEGRPLPDWRPP
VSATLVRREST
>Mature_330_residues
SEATAKRRVTATDVAAVAGVSRATVGFVLNRTRGQTISEGTRERVLEAALRLGYRPNSAAQALASGRSRIVLFVLPDWPV
EYTFRIYLDEASRVLDEAGYSLVTYTRRPHGENRPLWELLTPDSVFGFTTFSPDEIASMRGCGIRRIFPDPARQEPLDLS
LAVSAGPRLQVEHLHEHGRRHLAYAAFADPRPSSLVQARHDAARERARALDLPPVDIRYIDYRDGSADDAVRAWHSAGVT
GVVAFNDDVAAAIVSAAIRLGIRIPDDLAVIGHDDSPIATMFVPALSTVRFDTATLGRGFAEYAIHQTEGRPLPDWRPPV
SATLVRREST

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786540, Length=333, Percent_Identity=27.6276276276276, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789202, Length=332, Percent_Identity=28.0120481927711, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI48994940, Length=296, Percent_Identity=24.6621621621622, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36344; Mature: 36213

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEATAKRRVTATDVAAVAGVSRATVGFVLNRTRGQTISEGTRERVLEAALRLGYRPNSA
CCCCHHHCCCCHHHHHHHHCCHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHH
AQALASGRSRIVLFVLPDWPVEYTFRIYLDEASRVLDEAGYSLVTYTRRPHGENRPLWEL
HHHHHCCCCEEEEEEECCCCCEEEEEEEECHHHHHHHHCCCEEEEEEECCCCCCCCEEEE
LTPDSVFGFTTFSPDEIASMRGCGIRRIFPDPARQEPLDLSLAVSAGPRLQVEHLHEHGR
CCCCCCCEEECCCHHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCCCCEEHHHHHHCCC
RHLAYAAFADPRPSSLVQARHDAARERARALDLPPVDIRYIDYRDGSADDAVRAWHSAGV
CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC
TGVVAFNDDVAAAIVSAAIRLGIRIPDDLAVIGHDDSPIATMFVPALSTVRFDTATLGRG
EEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHEECHHHHHCC
FAEYAIHQTEGRPLPDWRPPVSATLVRREST
HHHHHEECCCCCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure 
SEATAKRRVTATDVAAVAGVSRATVGFVLNRTRGQTISEGTRERVLEAALRLGYRPNSA
CCCHHHCCCCHHHHHHHHCCHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHH
AQALASGRSRIVLFVLPDWPVEYTFRIYLDEASRVLDEAGYSLVTYTRRPHGENRPLWEL
HHHHHCCCCEEEEEEECCCCCEEEEEEEECHHHHHHHHCCCEEEEEEECCCCCCCCEEEE
LTPDSVFGFTTFSPDEIASMRGCGIRRIFPDPARQEPLDLSLAVSAGPRLQVEHLHEHGR
CCCCCCCEEECCCHHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCCCCEEHHHHHHCCC
RHLAYAAFADPRPSSLVQARHDAARERARALDLPPVDIRYIDYRDGSADDAVRAWHSAGV
CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC
TGVVAFNDDVAAAIVSAAIRLGIRIPDDLAVIGHDDSPIATMFVPALSTVRFDTATLGRG
EEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHEECHHHHHCC
FAEYAIHQTEGRPLPDWRPPVSATLVRREST
HHHHHEECCCCCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]