Click here to switch to the map view.

The map label for this gene is ydeP [H]

Identifier: 158314573

GI number: 158314573

Start: 3253972

End: 3254352

Strand: Direct

Name: ydeP [H]

Synonym: Franean1_2749

Alternate gene names: 158314573

Gene position: 3253972-3254352 (Clockwise)

Preceding gene: 158314571

Following gene: 158314574

Centisome position: 36.23

GC content: 63.78

Gene sequence:

>381_bases
ATGTCCCCTCCCGCTGGCACTGTCACGGTCGAGGACCGCGACGAATGCCCGGCACTCGCCGTCCTGCGTCGAGTCGGTGA
CAAGTGGAGCGTCGTCGTCCTTTCCCTGTTGGTACGACGTAGTCACGGCTTCAACGAGCTCGATCGTTCCATCGAGGGAC
TCAGCCGGCGCATCCTCACCCGCACGTTGCGTTCACTCGAACGCGACGGTCTGATCGACCGGACCGTTTACGGAACCAAG
TCGCCTCGCGTCGATTACGCGATCACCGACCTTGGTCGGACGCTGTGTTCGCACGTCAGTGCGCTGGGCGCATGGGCGGC
CGCCCACAAATCGGACCTCGATGCCGCCCAGGCCAGCTTCGATGCCAATACAGCTGCCTAG

Upstream 100 bases:

>100_bases
CATGGAGTCTCCTCGTCGGGGTAGGCGCGGTGGTCGCGGTGCGTGGACATGGTGGCTGTACGGTAAGGAGCCATCCACCG
CTCGTGAAGAAGGCACATTT

Downstream 100 bases:

>100_bases
AATAGTGAAGTGTGGACCGTCACCACCAATCAACCTCCGTCAATCAACGCGACATCTAAACGTTTGCGGTCAGTTAGCGA
CGGAGCTGATCATCCTTCAT

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSPPAGTVTVEDRDECPALAVLRRVGDKWSVVVLSLLVRRSHGFNELDRSIEGLSRRILTRTLRSLERDGLIDRTVYGTK
SPRVDYAITDLGRTLCSHVSALGAWAAAHKSDLDAAQASFDANTAA

Sequences:

>Translated_126_residues
MSPPAGTVTVEDRDECPALAVLRRVGDKWSVVVLSLLVRRSHGFNELDRSIEGLSRRILTRTLRSLERDGLIDRTVYGTK
SPRVDYAITDLGRTLCSHVSALGAWAAAHKSDLDAAQASFDANTAA
>Mature_125_residues
SPPAGTVTVEDRDECPALAVLRRVGDKWSVVVLSLLVRRSHGFNELDRSIEGLSRRILTRTLRSLERDGLIDRTVYGTKS
PRVDYAITDLGRTLCSHVSALGAWAAAHKSDLDAAQASFDANTAA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=92, Percent_Identity=36.9565217391304, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13706; Mature: 13574

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPPAGTVTVEDRDECPALAVLRRVGDKWSVVVLSLLVRRSHGFNELDRSIEGLSRRILT
CCCCCCEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RTLRSLERDGLIDRTVYGTKSPRVDYAITDLGRTLCSHVSALGAWAAAHKSDLDAAQASF
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DANTAA
CCCCCC
>Mature Secondary Structure 
SPPAGTVTVEDRDECPALAVLRRVGDKWSVVVLSLLVRRSHGFNELDRSIEGLSRRILT
CCCCCEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RTLRSLERDGLIDRTVYGTKSPRVDYAITDLGRTLCSHVSALGAWAAAHKSDLDAAQASF
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DANTAA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]