| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is mhpC [C]
Identifier: 158314326
GI number: 158314326
Start: 2973214
End: 2974509
Strand: Direct
Name: mhpC [C]
Synonym: Franean1_2496
Alternate gene names: 158314326
Gene position: 2973214-2974509 (Clockwise)
Preceding gene: 158314325
Following gene: 158314327
Centisome position: 33.1
GC content: 74.46
Gene sequence:
>1296_bases ATGGCCACTGATGCGGATCACCCCGTCGGGGATCGCGCGGAGCTGACCCTGCGCGCCGCCGGGCCGGGTGACGTCGCCGC GCTTGTCGAGCTGATCGAGTCCGCGTACCGGGGCGAGCGCAGCCGGGTTGGCTGGACCACCGAGGCCGACCTGCTGGGCG GCCAGCGCACCGACCCGGAGATGCTCGCCGCCGCGCTCGCCGAGCCCGACATCCGGATGCTCCTCGCGCTCGGCCCGGCC GGGGAGCCGGTCGGCTGCTGCCAGCTCCAGCGGCGCCCGGACGGCGCCTACTTCGGCATGTTCGCCGTCCAGCCGGACAT CCAGGGGCAAGGGATCGGGGACCGTCTGCTCACCGCCGCGGAGGCACTCGCCCGCGACGAGTGGGCGGCGGCCCGGATGG AGCTGTACGTCATCTCGCTGCGCGCCGAGCTGATCGCCTGGTACGAGCGGCGCGGCTACCGGCGTACGGACCGCCACGAG CCCTTCCCCTACGGGGACACCCGGTTCGGCGTGCCGCTGCGCGACGACCTGGTCTTCGCCGTCCTGGAGAAGGACCTCGG CCACCGGGTCGACGTCGGCGGCCTCGCGCTGCACGTCGAGACCTGGACGGGCCAGGCGCACTCATCCACCCCGCTGCTGC TCCTGCACGGCATCGGTGGGAGCACCAGGGACTGGGCCGGGGTGTCCCGCGAGCTCGCCGGCGCCGTGTCGAGCCGGGTC GTGGCCTACGACCACCGCGGCCACGGAACCAGCGGGCGGGCGGCCCGCCCGGAGTACACCTTCGACCACCTCGTCCGCGA TCTCGAGACCGTCGTCGCGACGCTGGAGCTGGCGCCGCTGCACCTGCTGGGGCATTCGATGGGCGGGGTGGTCGCGCTCC GGTACGCGCTGGCCCACCCCGAGGCCGTCCGGTCGCTGATCCTGATGGACACCGCCGCGGCGCCGGCGGCGGGTGATCAT CTGCTGTCCCGGCTGGGCATGGGCGCGCTCATGGAGGGCATCGCCGCCGCGACCGCGCTGCTGGGGCACGGGGACCACGC CGACCCCGCCGCCCTCGCCGCCTTCGGCCACGAGCTCAACGCCTACCCCTCGATGATCGACCGGCTGGGCGAGATCCGCT GCCCCACGACGGTCATCGTCGGCGAGCGGGACGTCCTGCTGCGTGGTGCCGCGCGGGATCTGGCCGGCGCCATCGAGGGT GCCCGGCTCGCGGTGATCGCCGGTGCCGATCACAACCCGCAGGCCAGTCACCCACAGGCCTGGCTCAGCGCGGTGGAGCG GCACGCCGCCTTCTGA
Upstream 100 bases:
>100_bases GCCCGACCCGCGGCGACGCGCGGGCGGAGTTCACCGTCGACTCGCCACTGGGCGCCGTCCTGCCCCGCCTCGCCGCCGAG CTGCTCGGCGCGGCCGCCTG
Downstream 100 bases:
>100_bases GAACCGCGGCCATTCATTTTCCGGCCCGGTGGCGGTGGCCGCGGTTGGCAGTGTCCACGGTCACGGGTTCTTCGCACGCC AGAATTTAGGACGTACTGAG
Product: alpha/beta hydrolase fold protein
Products: 2-oxopent-4-enoate; succinate [C]
Alternate protein names: NA
Number of amino acids: Translated: 431; Mature: 430
Protein sequence:
>431_residues MATDADHPVGDRAELTLRAAGPGDVAALVELIESAYRGERSRVGWTTEADLLGGQRTDPEMLAAALAEPDIRMLLALGPA GEPVGCCQLQRRPDGAYFGMFAVQPDIQGQGIGDRLLTAAEALARDEWAAARMELYVISLRAELIAWYERRGYRRTDRHE PFPYGDTRFGVPLRDDLVFAVLEKDLGHRVDVGGLALHVETWTGQAHSSTPLLLLHGIGGSTRDWAGVSRELAGAVSSRV VAYDHRGHGTSGRAARPEYTFDHLVRDLETVVATLELAPLHLLGHSMGGVVALRYALAHPEAVRSLILMDTAAAPAAGDH LLSRLGMGALMEGIAAATALLGHGDHADPAALAAFGHELNAYPSMIDRLGEIRCPTTVIVGERDVLLRGAARDLAGAIEG ARLAVIAGADHNPQASHPQAWLSAVERHAAF
Sequences:
>Translated_431_residues MATDADHPVGDRAELTLRAAGPGDVAALVELIESAYRGERSRVGWTTEADLLGGQRTDPEMLAAALAEPDIRMLLALGPA GEPVGCCQLQRRPDGAYFGMFAVQPDIQGQGIGDRLLTAAEALARDEWAAARMELYVISLRAELIAWYERRGYRRTDRHE PFPYGDTRFGVPLRDDLVFAVLEKDLGHRVDVGGLALHVETWTGQAHSSTPLLLLHGIGGSTRDWAGVSRELAGAVSSRV VAYDHRGHGTSGRAARPEYTFDHLVRDLETVVATLELAPLHLLGHSMGGVVALRYALAHPEAVRSLILMDTAAAPAAGDH LLSRLGMGALMEGIAAATALLGHGDHADPAALAAFGHELNAYPSMIDRLGEIRCPTTVIVGERDVLLRGAARDLAGAIEG ARLAVIAGADHNPQASHPQAWLSAVERHAAF >Mature_430_residues ATDADHPVGDRAELTLRAAGPGDVAALVELIESAYRGERSRVGWTTEADLLGGQRTDPEMLAAALAEPDIRMLLALGPAG EPVGCCQLQRRPDGAYFGMFAVQPDIQGQGIGDRLLTAAEALARDEWAAARMELYVISLRAELIAWYERRGYRRTDRHEP FPYGDTRFGVPLRDDLVFAVLEKDLGHRVDVGGLALHVETWTGQAHSSTPLLLLHGIGGSTRDWAGVSRELAGAVSSRVV AYDHRGHGTSGRAARPEYTFDHLVRDLETVVATLELAPLHLLGHSMGGVVALRYALAHPEAVRSLILMDTAAAPAAGDHL LSRLGMGALMEGIAAATALLGHGDHADPAALAAFGHELNAYPSMIDRLGEIRCPTTVIVGERDVLLRGAARDLAGAIEGA RLAVIAGADHNPQASHPQAWLSAVERHAAF
Specific function: 3-hydroxyphenylpropionate degradation. [C]
COG id: COG0454
COG function: function code KR; Histone acetyltransferase HPA2 and related acetyltransferases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dmpD/todF/xylF esterase family [H]
Homologues:
Organism=Homo sapiens, GI23200008, Length=107, Percent_Identity=33.6448598130841, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI23200012, Length=107, Percent_Identity=33.6448598130841, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI87081721, Length=250, Percent_Identity=28.4, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640348, Length=156, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: 3.7.1.- [C]
Molecular weight: Translated: 45966; Mature: 45834
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATDADHPVGDRAELTLRAAGPGDVAALVELIESAYRGERSRVGWTTEADLLGGQRTDPE CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHH MLAAALAEPDIRMLLALGPAGEPVGCCQLQRRPDGAYFGMFAVQPDIQGQGIGDRLLTAA HHHHHHCCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHH EALARDEWAAARMELYVISLRAELIAWYERRGYRRTDRHEPFPYGDTRFGVPLRDDLVFA HHHHHHHHHHHHEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHHHHH VLEKDLGHRVDVGGLALHVETWTGQAHSSTPLLLLHGIGGSTRDWAGVSRELAGAVSSRV HHHHHCCCEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCE VAYDHRGHGTSGRAARPEYTFDHLVRDLETVVATLELAPLHLLGHSMGGVVALRYALAHP EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCH EAVRSLILMDTAAAPAAGDHLLSRLGMGALMEGIAAATALLGHGDHADPAALAAFGHELN HHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH AYPSMIDRLGEIRCPTTVIVGERDVLLRGAARDLAGAIEGARLAVIAGADHNPQASHPQA HHHHHHHHHHCCCCCEEEEECCCHHEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH WLSAVERHAAF HHHHHHHHCCC >Mature Secondary Structure ATDADHPVGDRAELTLRAAGPGDVAALVELIESAYRGERSRVGWTTEADLLGGQRTDPE CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHH MLAAALAEPDIRMLLALGPAGEPVGCCQLQRRPDGAYFGMFAVQPDIQGQGIGDRLLTAA HHHHHHCCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHH EALARDEWAAARMELYVISLRAELIAWYERRGYRRTDRHEPFPYGDTRFGVPLRDDLVFA HHHHHHHHHHHHEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHHHHH VLEKDLGHRVDVGGLALHVETWTGQAHSSTPLLLLHGIGGSTRDWAGVSRELAGAVSSRV HHHHHCCCEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCE VAYDHRGHGTSGRAARPEYTFDHLVRDLETVVATLELAPLHLLGHSMGGVVALRYALAHP EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCH EAVRSLILMDTAAAPAAGDHLLSRLGMGALMEGIAAATALLGHGDHADPAALAAFGHELN HHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH AYPSMIDRLGEIRCPTTVIVGERDVLLRGAARDLAGAIEGARLAVIAGADHNPQASHPQA HHHHHHHHHHCCCCCEEEEECCCHHEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH WLSAVERHAAF HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 2-hydroxy-6-ketononadienedicarboxylate; H2O [C]
Specific reaction: 2-hydroxy-6-ketononadienedicarboxylate + H2O = 2-oxopent-4-enoate + succinate [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]