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The map label for this gene is nolA [H]

Identifier: 158314187

GI number: 158314187

Start: 2801691

End: 2802101

Strand: Direct

Name: nolA [H]

Synonym: Franean1_2357

Alternate gene names: 158314187

Gene position: 2801691-2802101 (Clockwise)

Preceding gene: 158314186

Following gene: 158314188

Centisome position: 31.19

GC content: 68.13

Gene sequence:

>411_bases
GTGCGGATCGGCGAGCTGGCGGGCGCGGCGGGGACGACGACCCGGGCGCTGCGCTACTACGAGGAGCAGGGCCTGCTCAA
TCCACAGCGCGCCGCGAGCGGTTACCGGTGTTACGACCGCGAAGACGTCACGCGGGTCGAGAACATCCGCAAACTGCTCG
CGACGGGCTTCACGTTGCAGGACATCCGGTCTTTTCTTGCTTTTCTCGACCGCCCGCTGCCCGACCAGTTCCGTTCGGCA
CCCATGTGCCAGGATGCGCTCGCGGTCGCCGCTCGGCGTCTTGCCTCACTCGACGAACGCATCGATGCCCTGACAGAGCT
CCGGTACCGACTGGCCCGGCGGCTTCCCGAGCTTGCAGCGGACACGGCCGAGGTGGGTTCGGTGGAGTGGTCGAGGTCCG
CGGCGACCTGA

Upstream 100 bases:

>100_bases
GCCTTCATCGACATGCTGGGCGGTGTGTATACCGGCAAGGTCGTCGTTCGGCTCCCGGGATAGACCTGTCAGGCTACGGT
TGTCCGCGGAGGTGGTGGCA

Downstream 100 bases:

>100_bases
TCTGTCGCGAACAGCTGATCTTTCGCGAACAGTGGCGGGTCAGCTGCCCGAGTTCGCGTGGACGCTCGACTAGTGTTCCG
TGACGTTACGTTGCCGAATT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MRIGELAGAAGTTTRALRYYEEQGLLNPQRAASGYRCYDREDVTRVENIRKLLATGFTLQDIRSFLAFLDRPLPDQFRSA
PMCQDALAVAARRLASLDERIDALTELRYRLARRLPELAADTAEVGSVEWSRSAAT

Sequences:

>Translated_136_residues
MRIGELAGAAGTTTRALRYYEEQGLLNPQRAASGYRCYDREDVTRVENIRKLLATGFTLQDIRSFLAFLDRPLPDQFRSA
PMCQDALAVAARRLASLDERIDALTELRYRLARRLPELAADTAEVGSVEWSRSAAT
>Mature_136_residues
MRIGELAGAAGTTTRALRYYEEQGLLNPQRAASGYRCYDREDVTRVENIRKLLATGFTLQDIRSFLAFLDRPLPDQFRSA
PMCQDALAVAARRLASLDERIDALTELRYRLARRLPELAADTAEVGSVEWSRSAAT

Specific function: Involved in genotype-specific nodulation of soybeans [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789687, Length=124, Percent_Identity=33.0645161290323, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 15251; Mature: 15251

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGELAGAAGTTTRALRYYEEQGLLNPQRAASGYRCYDREDVTRVENIRKLLATGFTLQ
CCCHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
DIRSFLAFLDRPLPDQFRSAPMCQDALAVAARRLASLDERIDALTELRYRLARRLPELAA
HHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTAEVGSVEWSRSAAT
HHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRIGELAGAAGTTTRALRYYEEQGLLNPQRAASGYRCYDREDVTRVENIRKLLATGFTLQ
CCCHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
DIRSFLAFLDRPLPDQFRSAPMCQDALAVAARRLASLDERIDALTELRYRLARRLPELAA
HHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTAEVGSVEWSRSAAT
HHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631662 [H]