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The map label for this gene is ybdK [C]

Identifier: 158314125

GI number: 158314125

Start: 2738443

End: 2741040

Strand: Direct

Name: ybdK [C]

Synonym: Franean1_2292

Alternate gene names: 158314125

Gene position: 2738443-2741040 (Clockwise)

Preceding gene: 158314124

Following gene: 158314126

Centisome position: 30.49

GC content: 74.25

Gene sequence:

>2598_bases
ATGAGCGACGCGCGGATCGCGGCCGTCGGTGTTGAAGAAGAATTCCACATTCTCGATCTCGCTACCAGGCAGCTGGTACC
CCGCGCGGAGGAGATCCTGCGCGGCCTCCCCGACGACCAGTTCTCCCCGGAGCTGCTGCGCTCCGTGGTCGAAACCAACA
GCCGGCCCTGTACCGACCTCTCCGACCTCCGGGCGGACCTGCTCGACCTGCGCCGCCGCCTCGCCGCGGTCGCCGAGCCG
CTGGGCCTCGGCCCCGCCGCGGCGGGAACGGTGCCGATCGTCGACATGTCCGTCCTCGACGTCTCGCGGGACGCGCGCTA
CATCCAGATGACCGAGGAGTACCAGCTCCTCGCGCGCGAGCAGCTCATCTGCGGCGCCCAGGTCCATGTCGACGTCGCCG
ACCGCGACCTGGCGATGGCCGTCACCGCCTGGGTGGCCCCCTGGCTGCCGATGCTGCTGGCGCTGTCGGCGAGCTCGCCG
TTCTGGCGCGGTGCCGACAGCGGCTACGCGAGCATGCGGACGATGGTCTGGCAGCGCTGGCCGACCGCCGGCGTGGCCGG
GCCGTTCCGCACCGCCGCCGAGTACGACCAGCTGGTGGCGGACCTGGTGAAGTCGGGCGTCATCAGCGACCCGGGCATGG
TCTACTTCGACGTCCGGCCGTCCGCGCACCTGCCCACCGTCGAGCTGCGCATCTGCGACGCCTGCCCGGACGTCGACAAC
GTCATCCTGATCGCCGGCCTGTTCCGGGCGCTGGTGTGCCGGGCGATCGAGGCGGTCGAGGCGGGCGCACCGGCTCCGCC
GCCGCGCGCCGAGCTGCTGCGCGCGGCGACCTGGCGCGCGGCCCGCTCCGGCATCGAGAGCGACCTCGTGGACCTGTCGG
GCACCGGCTGCATGCCGGCCGAGGAGCTGCTGCGCCGGCTGCTCACCGAGGTCCGTCCCGACCTGGAGAAGGTCGGGGAC
TGGGACCTGGTGCGTGACCTGGCCGAGGCGGCGGTGGGGCGGGGGAGCGCCGCGTCCCGCCAGCGCCGGGCTTTCGCCCG
CCGCGGCCTGCTGACCGACGTCGCGGACCTCGTGCTGGCCGAGACGCGCGAGTCGCCGGCGTCGGCGGTCCACCCGCCGG
GCACCGTCCCGTCGGTGGGCGCGGTGGCAGCGCTGCCGCCGCTGCTGGACCGCTACCAGCCGTCCGGGTTCGACGAGGTC
ATCGCCGAGGGCGGTGGTGTCCGGCCGCACTACCGCGGCGTGGTGCGCACCCTGGACCGCCTCGGCCCGGCGGTGCTCGC
CGAGCGCGGCGAGGCCATGCAGGCCGAGCAGGTCGAGCGCGGCGTGGTGTTCCGGGTGAACGGCGAGACCGAGCAGCGCC
CGTTCCCGTTCGACCTGGTTCCGCGGGTCGTCACCGCGGGCGACTGGGAGCGCCTGCAGTCCGGGCTCACCCAGCGCGTG
CGGGCGCTGGAGGCGTTCCTGCGCGACACCTACTCCGAGCGCGCCGCGGTCGCCGACGGGGTGATCCCGGCCTGGCTGGT
CAACGACTCGCCGGGGCTGCGCCACTCCGGCCGGGTCCTCTCCGGCGACGGGTCGCCGCGCTCCGGCGGTGTGCGGGTGA
CGGTGGCGGGCATCGACCTCGTCCGCGGCGCCGACGGCAAGTGGCTCGTGCTGGAGGACAACCTGCGGGTGCCGTCCGGG
ATCGCCTACGCGATCGAGGGCCGGCGGCTGACCCGGTCGGCGCTGCCCGAGCTCAACCCGCCCGGCGCCATCCTGGGGGT
GGACGCGGTGCCGGCGCTGCTACACGAGGCGCTGGTCGCGGCCGCCCCGCCGGCGGTGCGCGGCGAGCCCGCCGTCGCCG
TCCTCACCGTCGGCGAGGAGGACTCCGCCTACTACGAGCACACCTTCCTCGCCGAGGAGATGGGGGTGCCGCTGCTGACC
CCGGCCGACATCCTGGTCGACGACGACGTGCTCTACGCCGTCGACGGCGGGCGGCGGCGGCGGATCGACGTCCTCTACCG
GAGGGTGGACGAGGACGAGCTGACGGGGCTGCCGGGCGCTGACGGGCTGCCACTGGGCCCCGGGCTGCTGCGCGCGGTGC
GGGCTGGCTCGCTCGCGCTGGCGAACGCGCTGGGCAACGGGGTCGCCGACGACAAGGTCGTCTACGCCTACGTCTCCCGG
ATGATCACCTACTACCTGGGTGAGCAGCCGCTGCTCGACGACGTCCCGACCTATGTGTGCGGTGATCAGGAGCAGTGCTC
GCACGTCCTGGAGCACCTCGAGCAGCTCGTCGTGAAGCCGGTGGACGGCTACGGGGGCTCCGGGGTGGTGATCGGCCCGC
AGGCCGAGCCGTTCGAGCTGACCGAGGTCCGCGAGCGGATCCTGGCCGACCCGCGTGGCTGGATCGGCCAGGAGATGGTC
GCCCTGTCGACCCATCCCACCTGGGTCGACGGTGAGCTCCAGCCGTGCGCGGTCGATCTGCGGGCCTTCGTCTACGCCGG
CCGCGAGACGGCGGTGGTCGCGCCGGCCGCCCTGAGCCGGGTCGCGCCGCCGGGCAGCCTGATCGTCAACTCGTCCCGGG
GCGGCGGGTCGAAGGACACCTGGCTGCTGCGTCCCTGA

Upstream 100 bases:

>100_bases
GGCACCATCGGAGACCGCTCCCGAAGAATTCCGATTCACGGCGACCTGTGACACACTCAGGACATATCGCCGTAACCCCT
CGGGTCTAGTGTAGGTATTC

Downstream 100 bases:

>100_bases
GCGTGCCCGACGGCCGGCGGTCCCCTGGGCCGCCGGCCGTCGGCGTTCTGGCGGCACCCGCCGTGCGGCCGCGCGTCGGC
GTGCGAGCGGGCGGCGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 865; Mature: 864

Protein sequence:

>865_residues
MSDARIAAVGVEEEFHILDLATRQLVPRAEEILRGLPDDQFSPELLRSVVETNSRPCTDLSDLRADLLDLRRRLAAVAEP
LGLGPAAAGTVPIVDMSVLDVSRDARYIQMTEEYQLLAREQLICGAQVHVDVADRDLAMAVTAWVAPWLPMLLALSASSP
FWRGADSGYASMRTMVWQRWPTAGVAGPFRTAAEYDQLVADLVKSGVISDPGMVYFDVRPSAHLPTVELRICDACPDVDN
VILIAGLFRALVCRAIEAVEAGAPAPPPRAELLRAATWRAARSGIESDLVDLSGTGCMPAEELLRRLLTEVRPDLEKVGD
WDLVRDLAEAAVGRGSAASRQRRAFARRGLLTDVADLVLAETRESPASAVHPPGTVPSVGAVAALPPLLDRYQPSGFDEV
IAEGGGVRPHYRGVVRTLDRLGPAVLAERGEAMQAEQVERGVVFRVNGETEQRPFPFDLVPRVVTAGDWERLQSGLTQRV
RALEAFLRDTYSERAAVADGVIPAWLVNDSPGLRHSGRVLSGDGSPRSGGVRVTVAGIDLVRGADGKWLVLEDNLRVPSG
IAYAIEGRRLTRSALPELNPPGAILGVDAVPALLHEALVAAAPPAVRGEPAVAVLTVGEEDSAYYEHTFLAEEMGVPLLT
PADILVDDDVLYAVDGGRRRRIDVLYRRVDEDELTGLPGADGLPLGPGLLRAVRAGSLALANALGNGVADDKVVYAYVSR
MITYYLGEQPLLDDVPTYVCGDQEQCSHVLEHLEQLVVKPVDGYGGSGVVIGPQAEPFELTEVRERILADPRGWIGQEMV
ALSTHPTWVDGELQPCAVDLRAFVYAGRETAVVAPAALSRVAPPGSLIVNSSRGGGSKDTWLLRP

Sequences:

>Translated_865_residues
MSDARIAAVGVEEEFHILDLATRQLVPRAEEILRGLPDDQFSPELLRSVVETNSRPCTDLSDLRADLLDLRRRLAAVAEP
LGLGPAAAGTVPIVDMSVLDVSRDARYIQMTEEYQLLAREQLICGAQVHVDVADRDLAMAVTAWVAPWLPMLLALSASSP
FWRGADSGYASMRTMVWQRWPTAGVAGPFRTAAEYDQLVADLVKSGVISDPGMVYFDVRPSAHLPTVELRICDACPDVDN
VILIAGLFRALVCRAIEAVEAGAPAPPPRAELLRAATWRAARSGIESDLVDLSGTGCMPAEELLRRLLTEVRPDLEKVGD
WDLVRDLAEAAVGRGSAASRQRRAFARRGLLTDVADLVLAETRESPASAVHPPGTVPSVGAVAALPPLLDRYQPSGFDEV
IAEGGGVRPHYRGVVRTLDRLGPAVLAERGEAMQAEQVERGVVFRVNGETEQRPFPFDLVPRVVTAGDWERLQSGLTQRV
RALEAFLRDTYSERAAVADGVIPAWLVNDSPGLRHSGRVLSGDGSPRSGGVRVTVAGIDLVRGADGKWLVLEDNLRVPSG
IAYAIEGRRLTRSALPELNPPGAILGVDAVPALLHEALVAAAPPAVRGEPAVAVLTVGEEDSAYYEHTFLAEEMGVPLLT
PADILVDDDVLYAVDGGRRRRIDVLYRRVDEDELTGLPGADGLPLGPGLLRAVRAGSLALANALGNGVADDKVVYAYVSR
MITYYLGEQPLLDDVPTYVCGDQEQCSHVLEHLEQLVVKPVDGYGGSGVVIGPQAEPFELTEVRERILADPRGWIGQEMV
ALSTHPTWVDGELQPCAVDLRAFVYAGRETAVVAPAALSRVAPPGSLIVNSSRGGGSKDTWLLRP
>Mature_864_residues
SDARIAAVGVEEEFHILDLATRQLVPRAEEILRGLPDDQFSPELLRSVVETNSRPCTDLSDLRADLLDLRRRLAAVAEPL
GLGPAAAGTVPIVDMSVLDVSRDARYIQMTEEYQLLAREQLICGAQVHVDVADRDLAMAVTAWVAPWLPMLLALSASSPF
WRGADSGYASMRTMVWQRWPTAGVAGPFRTAAEYDQLVADLVKSGVISDPGMVYFDVRPSAHLPTVELRICDACPDVDNV
ILIAGLFRALVCRAIEAVEAGAPAPPPRAELLRAATWRAARSGIESDLVDLSGTGCMPAEELLRRLLTEVRPDLEKVGDW
DLVRDLAEAAVGRGSAASRQRRAFARRGLLTDVADLVLAETRESPASAVHPPGTVPSVGAVAALPPLLDRYQPSGFDEVI
AEGGGVRPHYRGVVRTLDRLGPAVLAERGEAMQAEQVERGVVFRVNGETEQRPFPFDLVPRVVTAGDWERLQSGLTQRVR
ALEAFLRDTYSERAAVADGVIPAWLVNDSPGLRHSGRVLSGDGSPRSGGVRVTVAGIDLVRGADGKWLVLEDNLRVPSGI
AYAIEGRRLTRSALPELNPPGAILGVDAVPALLHEALVAAAPPAVRGEPAVAVLTVGEEDSAYYEHTFLAEEMGVPLLTP
ADILVDDDVLYAVDGGRRRRIDVLYRRVDEDELTGLPGADGLPLGPGLLRAVRAGSLALANALGNGVADDKVVYAYVSRM
ITYYLGEQPLLDDVPTYVCGDQEQCSHVLEHLEQLVVKPVDGYGGSGVVIGPQAEPFELTEVRERILADPRGWIGQEMVA
LSTHPTWVDGELQPCAVDLRAFVYAGRETAVVAPAALSRVAPPGSLIVNSSRGGGSKDTWLLRP

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2308

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the N-terminal section; belongs to the carboxylate- amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=308, Percent_Identity=24.025974025974, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013815
- InterPro:   IPR011793
- InterPro:   IPR007297
- InterPro:   IPR007302
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04169 DUF404; PF04174 DUF407; PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 92937; Mature: 92806

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDARIAAVGVEEEFHILDLATRQLVPRAEEILRGLPDDQFSPELLRSVVETNSRPCTDL
CCCCEEEEECCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCH
SDLRADLLDLRRRLAAVAEPLGLGPAAAGTVPIVDMSVLDVSRDARYIQMTEEYQLLARE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHCCCCCCEEEEHHHHHHHHHH
QLICGAQVHVDVADRDLAMAVTAWVAPWLPMLLALSASSPFWRGADSGYASMRTMVWQRW
HHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC
PTAGVAGPFRTAAEYDQLVADLVKSGVISDPGMVYFDVRPSAHLPTVELRICDACPDVDN
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCH
VILIAGLFRALVCRAIEAVEAGAPAPPPRAELLRAATWRAARSGIESDLVDLSGTGCMPA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCH
EELLRRLLTEVRPDLEKVGDWDLVRDLAEAAVGRGSAASRQRRAFARRGLLTDVADLVLA
HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHH
ETRESPASAVHPPGTVPSVGAVAALPPLLDRYQPSGFDEVIAEGGGVRPHYRGVVRTLDR
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHH
LGPAVLAERGEAMQAEQVERGVVFRVNGETEQRPFPFDLVPRVVTAGDWERLQSGLTQRV
HCHHHHHHCCCHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
RALEAFLRDTYSERAAVADGVIPAWLVNDSPGLRHSGRVLSGDGSPRSGGVRVTVAGIDL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEEEE
VRGADGKWLVLEDNLRVPSGIAYAIEGRRLTRSALPELNPPGAILGVDAVPALLHEALVA
EECCCCCEEEEECCCCCCCCEEEEECCCHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHH
AAPPAVRGEPAVAVLTVGEEDSAYYEHTFLAEEMGVPLLTPADILVDDDVLYAVDGGRRR
CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCEEEEECCCCCH
RIDVLYRRVDEDELTGLPGADGLPLGPGLLRAVRAGSLALANALGNGVADDKVVYAYVSR
HHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHH
MITYYLGEQPLLDDVPTYVCGDQEQCSHVLEHLEQLVVKPVDGYGGSGVVIGPQAEPFEL
HHHHHHCCCCCHHHCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHH
TEVRERILADPRGWIGQEMVALSTHPTWVDGELQPCAVDLRAFVYAGRETAVVAPAALSR
HHHHHHHHCCCCCCCCCCEEEEECCCCEECCCCCHHHHHHHHHHHCCCCCEEECHHHHHH
VAPPGSLIVNSSRGGGSKDTWLLRP
CCCCCCEEEECCCCCCCCCCEEECC
>Mature Secondary Structure 
SDARIAAVGVEEEFHILDLATRQLVPRAEEILRGLPDDQFSPELLRSVVETNSRPCTDL
CCCEEEEECCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCH
SDLRADLLDLRRRLAAVAEPLGLGPAAAGTVPIVDMSVLDVSRDARYIQMTEEYQLLARE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHCCCCCCEEEEHHHHHHHHHH
QLICGAQVHVDVADRDLAMAVTAWVAPWLPMLLALSASSPFWRGADSGYASMRTMVWQRW
HHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC
PTAGVAGPFRTAAEYDQLVADLVKSGVISDPGMVYFDVRPSAHLPTVELRICDACPDVDN
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCH
VILIAGLFRALVCRAIEAVEAGAPAPPPRAELLRAATWRAARSGIESDLVDLSGTGCMPA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCH
EELLRRLLTEVRPDLEKVGDWDLVRDLAEAAVGRGSAASRQRRAFARRGLLTDVADLVLA
HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHH
ETRESPASAVHPPGTVPSVGAVAALPPLLDRYQPSGFDEVIAEGGGVRPHYRGVVRTLDR
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHH
LGPAVLAERGEAMQAEQVERGVVFRVNGETEQRPFPFDLVPRVVTAGDWERLQSGLTQRV
HCHHHHHHCCCHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
RALEAFLRDTYSERAAVADGVIPAWLVNDSPGLRHSGRVLSGDGSPRSGGVRVTVAGIDL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEEEEEEE
VRGADGKWLVLEDNLRVPSGIAYAIEGRRLTRSALPELNPPGAILGVDAVPALLHEALVA
EECCCCCEEEEECCCCCCCCEEEEECCCHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHH
AAPPAVRGEPAVAVLTVGEEDSAYYEHTFLAEEMGVPLLTPADILVDDDVLYAVDGGRRR
CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCEEEEECCCCCH
RIDVLYRRVDEDELTGLPGADGLPLGPGLLRAVRAGSLALANALGNGVADDKVVYAYVSR
HHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHH
MITYYLGEQPLLDDVPTYVCGDQEQCSHVLEHLEQLVVKPVDGYGGSGVVIGPQAEPFEL
HHHHHHCCCCCHHHCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHH
TEVRERILADPRGWIGQEMVALSTHPTWVDGELQPCAVDLRAFVYAGRETAVVAPAALSR
HHHHHHHHCCCCCCCCCCEEEEECCCCEECCCCCHHHHHHHHHHHCCCCCEEECHHHHHH
VAPPGSLIVNSSRGGGSKDTWLLRP
CCCCCCEEEECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA