| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158314112
Identifier: 158314112
GI number: 158314112
Start: 2722953
End: 2724299
Strand: Direct
Name: 158314112
Synonym: Franean1_2279
Alternate gene names: NA
Gene position: 2722953-2724299 (Clockwise)
Preceding gene: 158314108
Following gene: 158314113
Centisome position: 30.32
GC content: 72.68
Gene sequence:
>1347_bases ATGGCCATCGTGTCGCGGTCGCGCGTCCTAAGCGTTGCGATCGCTACGGTTCTGCTGCTGGCGACCGGCTGCTCCGAGGA TTCGAATTCCAACGGTACCGGGGTTTCCGGCGTCGTCAAGATCGGCCTGTTGGCTCCGCTCGGCGGAGCGAACGCGGAAG CCGGCCGGGACGCTCAGCGCGGCGCGGATCTCGCCGCCTCGGTCGTCAATGCCGGCGCGGACGCCGATCTCGCCTCGACG GGCATCTGGGGCGCCAGCCGCGCCGCCTCGCTGTCCATCGTGACAATGGACACAGAAAGCGATCGGCAGCGTGCGGTTGA TGCTACAGACCGCCTGGTCGCCGAAGAGCACGTCGCCGGCATGGTCGGCGCGTTCGACGCCGAGGCGACGCTGGATGCCA GCCAACGCGCCGAACGCCTCGGAACACCATTCGTAAGTGGTGACGTTCCGTTGAGTGCGCTAACAGAACGTGGGCTGAAC TGGTTCTTCCGTTCCGGCCCGGACGTGCGGAGCTTCGGTGGCGCGTTCCTTTCTCTGCTGCGTGGCGCGGAACGGGACGG CGTCGCCCGTCGGCGGGTGGCCGTTCTTTACGGCGACCGGCCGGAAGGCCACGACCTGCAGGCCATGCTCCAGGAACTGG CCGAGGAGACCGACGTCGAGCTGGTCGCGCAGGAGCGCTACGCGCCGGGCGACGGGGACCTCACCGACGAGGTGGGCAGG ATCCGCGCCGCCGCGCCCGACATGGTGCTCTTCGGGGCGCTGCTCGGTGCCGGCCGCGCGCTCGGCGACGCGCTGGGCGG CCTCGGCTACGCCCCGCCCGGGATCGTCGTCTACGGGGCCGCGGCGGAGGCGGTGCCGCTGGCCTCGATGCCCGGTCTCG ACGGGCGGGTGAGCCGGCAGGTCGGGTGGTCGTCGCTGGTCGCGCAGGCGAACCCGCTGGCGACCCAGGTGTCGAAGCGC TACCAGAGCGCCTACGGCGGGCCGATGACAGAGGCCGCCGCGGCCGCGTACACGGCGGTCATGGTGCTGGCCCGGGCGAT CGGCGCCGCGGGCGGTCTCGAGCCGGAGCAGATCAGGTCGGCGCTGGTGGCGACGAACGTGCCCGGCGCGGAGACGGTCA TGCCCTGGGAGGGCGTCCGCTTCGACGTGACGCACCAGAACGCGCTGGCCGCGACGGTGGTCGAGCAGGCCACCGGCAGC CGGTTCGCCGTCGTCTACCCGCGGGAGCTCGCCACGGTCGCCTTCACCTGGCCGGCGACGGACCCCGCCGGCGCGGGCGC GACCACCGGCTCCAGCGGGGGCGCGGGAACCGGCTCGGGCCGCGCCGACGCCCGCAGCGAGGGATGA
Upstream 100 bases:
>100_bases TACTCTGACTGCGGTACCGCGTGGACCGCTGTACCGCGTGTCTGAACGAGACCGCGTGTCTGAACGTGCGCCTGGAAGAT GACGACGTGGGGGACGAGCC
Downstream 100 bases:
>100_bases GCGGTGTCGACACCGAGCGAACCATCCCCCACCGGCCCCGCGCCGCTGCTGACGCTCACGGCGGCCGGCAAGCGCTTCCC GGACGGGACGACCGCCCTGA
Product: extracellular ligand-binding receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MAIVSRSRVLSVAIATVLLLATGCSEDSNSNGTGVSGVVKIGLLAPLGGANAEAGRDAQRGADLAASVVNAGADADLAST GIWGASRAASLSIVTMDTESDRQRAVDATDRLVAEEHVAGMVGAFDAEATLDASQRAERLGTPFVSGDVPLSALTERGLN WFFRSGPDVRSFGGAFLSLLRGAERDGVARRRVAVLYGDRPEGHDLQAMLQELAEETDVELVAQERYAPGDGDLTDEVGR IRAAAPDMVLFGALLGAGRALGDALGGLGYAPPGIVVYGAAAEAVPLASMPGLDGRVSRQVGWSSLVAQANPLATQVSKR YQSAYGGPMTEAAAAAYTAVMVLARAIGAAGGLEPEQIRSALVATNVPGAETVMPWEGVRFDVTHQNALAATVVEQATGS RFAVVYPRELATVAFTWPATDPAGAGATTGSSGGAGTGSGRADARSEG
Sequences:
>Translated_448_residues MAIVSRSRVLSVAIATVLLLATGCSEDSNSNGTGVSGVVKIGLLAPLGGANAEAGRDAQRGADLAASVVNAGADADLAST GIWGASRAASLSIVTMDTESDRQRAVDATDRLVAEEHVAGMVGAFDAEATLDASQRAERLGTPFVSGDVPLSALTERGLN WFFRSGPDVRSFGGAFLSLLRGAERDGVARRRVAVLYGDRPEGHDLQAMLQELAEETDVELVAQERYAPGDGDLTDEVGR IRAAAPDMVLFGALLGAGRALGDALGGLGYAPPGIVVYGAAAEAVPLASMPGLDGRVSRQVGWSSLVAQANPLATQVSKR YQSAYGGPMTEAAAAAYTAVMVLARAIGAAGGLEPEQIRSALVATNVPGAETVMPWEGVRFDVTHQNALAATVVEQATGS RFAVVYPRELATVAFTWPATDPAGAGATTGSSGGAGTGSGRADARSEG >Mature_447_residues AIVSRSRVLSVAIATVLLLATGCSEDSNSNGTGVSGVVKIGLLAPLGGANAEAGRDAQRGADLAASVVNAGADADLASTG IWGASRAASLSIVTMDTESDRQRAVDATDRLVAEEHVAGMVGAFDAEATLDASQRAERLGTPFVSGDVPLSALTERGLNW FFRSGPDVRSFGGAFLSLLRGAERDGVARRRVAVLYGDRPEGHDLQAMLQELAEETDVELVAQERYAPGDGDLTDEVGRI RAAAPDMVLFGALLGAGRALGDALGGLGYAPPGIVVYGAAAEAVPLASMPGLDGRVSRQVGWSSLVAQANPLATQVSKRY QSAYGGPMTEAAAAAYTAVMVLARAIGAAGGLEPEQIRSALVATNVPGAETVMPWEGVRFDVTHQNALAATVVEQATGSR FAVVYPRELATVAFTWPATDPAGAGATTGSSGGAGTGSGRADARSEG
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 - InterPro: IPR000709 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 45564; Mature: 45433
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIVSRSRVLSVAIATVLLLATGCSEDSNSNGTGVSGVVKIGLLAPLGGANAEAGRDAQR CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHH GADLAASVVNAGADADLASTGIWGASRAASLSIVTMDTESDRQRAVDATDRLVAEEHVAG HHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH MVGAFDAEATLDASQRAERLGTPFVSGDVPLSALTERGLNWFFRSGPDVRSFGGAFLSLL HHHCCCCCHHCCHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHCCCCCHHHHHHHHHHHH RGAERDGVARRRVAVLYGDRPEGHDLQAMLQELAEETDVELVAQERYAPGDGDLTDEVGR HCCCCCCHHHHEEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHH IRAAAPDMVLFGALLGAGRALGDALGGLGYAPPGIVVYGAAAEAVPLASMPGLDGRVSRQ HHHCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHH VGWSSLVAQANPLATQVSKRYQSAYGGPMTEAAAAAYTAVMVLARAIGAAGGLEPEQIRS HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH ALVATNVPGAETVMPWEGVRFDVTHQNALAATVVEQATGSRFAVVYPRELATVAFTWPAT HHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCC DPAGAGATTGSSGGAGTGSGRADARSEG CCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AIVSRSRVLSVAIATVLLLATGCSEDSNSNGTGVSGVVKIGLLAPLGGANAEAGRDAQR CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHH GADLAASVVNAGADADLASTGIWGASRAASLSIVTMDTESDRQRAVDATDRLVAEEHVAG HHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH MVGAFDAEATLDASQRAERLGTPFVSGDVPLSALTERGLNWFFRSGPDVRSFGGAFLSLL HHHCCCCCHHCCHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHCCCCCHHHHHHHHHHHH RGAERDGVARRRVAVLYGDRPEGHDLQAMLQELAEETDVELVAQERYAPGDGDLTDEVGR HCCCCCCHHHHEEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHH IRAAAPDMVLFGALLGAGRALGDALGGLGYAPPGIVVYGAAAEAVPLASMPGLDGRVSRQ HHHCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHH VGWSSLVAQANPLATQVSKRYQSAYGGPMTEAAAAAYTAVMVLARAIGAAGGLEPEQIRS HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH ALVATNVPGAETVMPWEGVRFDVTHQNALAATVVEQATGSRFAVVYPRELATVAFTWPAT HHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCC DPAGAGATTGSSGGAGTGSGRADARSEG CCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA