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The map label for this gene is omp38 [H]

Identifier: 158314079

GI number: 158314079

Start: 2684842

End: 2686065

Strand: Direct

Name: omp38 [H]

Synonym: Franean1_2246

Alternate gene names: 158314079

Gene position: 2684842-2686065 (Clockwise)

Preceding gene: 158314078

Following gene: 158314080

Centisome position: 29.89

GC content: 78.76

Gene sequence:

>1224_bases
ATGTCCTCGCCCGCGGTGGCGTTCCCGCGGCGCCCCCGTCTGGTGGCGTTCGCCGTCTCATTGATCATCGCCTGGCTGCT
GCTCGGGCTGGGGGCGCTCTGGCTGCGGCGCGGGCCGATCGAGAATGACCTGACCGGCCGGGCGGCGGACGCCGTCCGCG
CCGCGGGCGCCACCCAGGTGCGGGTCAGCGCCGAGGGCCGGGAGATCGTGCTGCACGGCCGCTTCGACAGCGCCGAGGAC
GCCCGCCGGGCGCGGGCGGCGGCCGCCGTCTCGGGCAGCAGCTCCGTCCGGCTGGCCGCGGACGCCGTCATCGCCTCGGA
GCCGGCGCAGCCCCTCGTGGTCGGGGTGGAGCGCGCCGGCCGAGCGCCGGGCGGGGTGGTGCTGAGTGCGACCGTGCCGG
ACAGTGCGACCCGGGCCGCCCTGCTGGGCGCGGCGGCGGACGCCGCCGGCGGCGTCGTCTCCGCGACGGTCACGGTCGAC
CCGCGGGTCGCGACGCCGGCCGTGGAGGCGTTCGGTGACGTGGCGAAGGCGTTGGGCACCGGGCCGGGCGTCCGCTCGGT
GACGATCGACGGCTCGTCGGTCGTGCTGTGGGGGAGCGCCCCCGACGACGCGGCACGGGCGTCGATCGGGGCGGCGGTCC
TGGCCGCGGCCCGGCAGTCGATCCCTGGCGCGTCCCTGGAGAACCGGCTTGCCGTCGGCTCGGGCGCCACCGTGACCCTC
GACCCGGCGACGGGCGAGATCGTCCGGCCGGCCGCACCGGCCCCGGCCACCGCGCCACGGTCGGCGCCGACCCCGGCCCC
GGCGACCGCGCCGGCACCCGGCACGACCGGCGGCGCCGGGCGGGCCGCCGCTGGCAGCGCGGACAGCACCCGGGCGGCGC
TGCGGGCGGCGCTCGACGGCACTGCCCTCACCTTTCCGGTGGGCGACACCGTCCTCGGCGCCTCGACGCGCTCCGGTCTG
GACAAGGTGGCCCGCGCGTTGCTGCCCGGCGACCTGACGGTGATCGTCGGCGGGCACACCGACAGCACCGGTCCGCGGGC
CCTCAACCAGGCGCTCTCGATCGACCGGGCCCGCGTCGCGCGCGAGTACCTGGTGATGCGGGGGGTTCCCGCGGAGCGGA
TCCGTGCGGCCGGCTTCGGCCCGGACCAGCCGATCGCGGACAACGCGAGCACGTCCGGCCGCGCGGCGAACCGCCGGGTC
GACGTGACTCCGGTCGCCGACTGA

Upstream 100 bases:

>100_bases
CTCGTGATCATGCTCGGCACGGCTACAGATCATCCCGCACGACAGTCCCGTCCGACAGGCCTGTTCCACCGTCCCGTTCG
ACATCGAGCACGGAGCATCC

Downstream 100 bases:

>100_bases
CTCCTCCGAGCACCGAGCACCGAGCACCGAGGACGTCCGAGGACGCGTCTGACGAACGTCCGTAACCGCTGTCCACCGGA
GGTCCGGTAGGTGTCCAGCG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: Outer membrane protein ompA; Outer membrane protein ompAb [H]

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSSPAVAFPRRPRLVAFAVSLIIAWLLLGLGALWLRRGPIENDLTGRAADAVRAAGATQVRVSAEGREIVLHGRFDSAED
ARRARAAAAVSGSSSVRLAADAVIASEPAQPLVVGVERAGRAPGGVVLSATVPDSATRAALLGAAADAAGGVVSATVTVD
PRVATPAVEAFGDVAKALGTGPGVRSVTIDGSSVVLWGSAPDDAARASIGAAVLAAARQSIPGASLENRLAVGSGATVTL
DPATGEIVRPAAPAPATAPRSAPTPAPATAPAPGTTGGAGRAAAGSADSTRAALRAALDGTALTFPVGDTVLGASTRSGL
DKVARALLPGDLTVIVGGHTDSTGPRALNQALSIDRARVAREYLVMRGVPAERIRAAGFGPDQPIADNASTSGRAANRRV
DVTPVAD

Sequences:

>Translated_407_residues
MSSPAVAFPRRPRLVAFAVSLIIAWLLLGLGALWLRRGPIENDLTGRAADAVRAAGATQVRVSAEGREIVLHGRFDSAED
ARRARAAAAVSGSSSVRLAADAVIASEPAQPLVVGVERAGRAPGGVVLSATVPDSATRAALLGAAADAAGGVVSATVTVD
PRVATPAVEAFGDVAKALGTGPGVRSVTIDGSSVVLWGSAPDDAARASIGAAVLAAARQSIPGASLENRLAVGSGATVTL
DPATGEIVRPAAPAPATAPRSAPTPAPATAPAPGTTGGAGRAAAGSADSTRAALRAALDGTALTFPVGDTVLGASTRSGL
DKVARALLPGDLTVIVGGHTDSTGPRALNQALSIDRARVAREYLVMRGVPAERIRAAGFGPDQPIADNASTSGRAANRRV
DVTPVAD
>Mature_406_residues
SSPAVAFPRRPRLVAFAVSLIIAWLLLGLGALWLRRGPIENDLTGRAADAVRAAGATQVRVSAEGREIVLHGRFDSAEDA
RRARAAAAVSGSSSVRLAADAVIASEPAQPLVVGVERAGRAPGGVVLSATVPDSATRAALLGAAADAAGGVVSATVTVDP
RVATPAVEAFGDVAKALGTGPGVRSVTIDGSSVVLWGSAPDDAARASIGAAVLAAARQSIPGASLENRLAVGSGATVTLD
PATGEIVRPAAPAPATAPRSAPTPAPATAPAPGTTGGAGRAAAGSADSTRAALRAALDGTALTFPVGDTVLGASTRSGLD
KVARALLPGDLTVIVGGHTDSTGPRALNQALSIDRARVAREYLVMRGVPAERIRAAGFGPDQPIADNASTSGRAANRRVD
VTPVAD

Specific function: Porin. Induces apoptosis in human laryngeal epithelial HEp-2 cells through caspases-dependent and AIF-dependent pathways. Purified omp38 enters the cells and localizes to the mitochondria, which leads to a release of proapoptotic molecules such as cytochr

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=91, Percent_Identity=43.956043956044, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 40263; Mature: 40132

Theoretical pI: Translated: 11.34; Mature: 11.34

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPAVAFPRRPRLVAFAVSLIIAWLLLGLGALWLRRGPIENDLTGRAADAVRAAGATQV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEE
RVSAEGREIVLHGRFDSAEDARRARAAAAVSGSSSVRLAADAVIASEPAQPLVVGVERAG
EEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCCCCEEEEHHHCC
RAPGGVVLSATVPDSATRAALLGAAADAAGGVVSATVTVDPRVATPAVEAFGDVAKALGT
CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCC
GPGVRSVTIDGSSVVLWGSAPDDAARASIGAAVLAAARQSIPGASLENRLAVGSGATVTL
CCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEE
DPATGEIVRPAAPAPATAPRSAPTPAPATAPAPGTTGGAGRAAAGSADSTRAALRAALDG
CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
TALTFPVGDTVLGASTRSGLDKVARALLPGDLTVIVGGHTDSTGPRALNQALSIDRARVA
CEEEECCCCCEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
REYLVMRGVPAERIRAAGFGPDQPIADNASTSGRAANRRVDVTPVAD
HHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure 
SSPAVAFPRRPRLVAFAVSLIIAWLLLGLGALWLRRGPIENDLTGRAADAVRAAGATQV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEE
RVSAEGREIVLHGRFDSAEDARRARAAAAVSGSSSVRLAADAVIASEPAQPLVVGVERAG
EEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCCCCEEEEHHHCC
RAPGGVVLSATVPDSATRAALLGAAADAAGGVVSATVTVDPRVATPAVEAFGDVAKALGT
CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCC
GPGVRSVTIDGSSVVLWGSAPDDAARASIGAAVLAAARQSIPGASLENRLAVGSGATVTL
CCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEE
DPATGEIVRPAAPAPATAPRSAPTPAPATAPAPGTTGGAGRAAAGSADSTRAALRAALDG
CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
TALTFPVGDTVLGASTRSGLDKVARALLPGDLTVIVGGHTDSTGPRALNQALSIDRARVA
CEEEECCCCCEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
REYLVMRGVPAERIRAAGFGPDQPIADNASTSGRAANRRVDVTPVAD
HHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA