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The map label for this gene is yfdE [H]

Identifier: 158314074

GI number: 158314074

Start: 2677867

End: 2679048

Strand: Direct

Name: yfdE [H]

Synonym: Franean1_2241

Alternate gene names: 158314074

Gene position: 2677867-2679048 (Clockwise)

Preceding gene: 158314073

Following gene: 158314075

Centisome position: 29.81

GC content: 75.21

Gene sequence:

>1182_bases
GTGCTTCCGCTTGCGGGTGTGACCGTCGTCAGCCTGGAGCATGCCGTGGCGCTGCCGTTCGCGACCCGGCACCTGGCCGA
GCTGGGCGCACGGGTGATCAAGGTGGAGCGCCCTGGGCAGGGGGACTTCGCGCGCGACTACGACCGCGCGGTGCGCGGCG
GGATGTCGGCCCACTTCTCCTGGCTGAACCGTTCCAAGGAGTCGCTGACCCTCGACCTGAAGGTGCCCCACGCCCGGGCC
GTGCTCGATCGTCTCATCGAGCGGGCCGACGTCGTCGCGCAGAATCTCGGGCCGGGAGCCGCGGCGCGGCTGGGCCTCGA
CGCGGCCACGCTCGTCGCCCGCCGTCCCGAGCTCGTCGCGGTGGACCTGTCCGGCTACGGCCCGAGCGGCCCCTACCGCG
GGCGGAAGGCCTACGACATGCTTGTCCAGGCCGAGGCGGGCCTGATCGCCGTCACCGGCACCCCGGACCATCCCGCCAAG
GCCGGGTTCGCCGCCGGTGACGTCGCCGCGGGCAGCTACGTGATCCAGGGTGTGCTCTCCGCGCTGCTGCGCCGGGAGCG
GTCGGGCGCCGGCGCCGCGCTGGAGATCGCCATGCTCGACGCCCTCACCGAATGGATGGGCTACCCGGTGCAGACCGTCG
AGCACACCGGGGTCGAGCTGGCCCGGTCCGGGATCGGCCACCAGTCGATCGCGCCGTACGAGGCCTTCCGGACGGCGGAC
GGCGACGACGTGCTCATCGGCGTCCAGAACGACGGAGAGTGGGCGCGGCTCGCCCGGGGCCCGCTGAGCCGCCCCGAACT
GGCGGACGACCCCGACTTCGCGACGAACCAGGCCCGGGTGCGGAACCGGGAGCGCACCGACGCCGTGGTCGCCGCCGTCG
TCGCCACCCTCGGCACGGCCGAACTGGAGGCGGGCCTTGCCGCGGCCGGGGTGGCGTACGCCCGGGTGAGCACCGTCGCC
GGCGTGCTCGCCCACCCCCAGCTCGCCGCCCGCGGGCGCTGGGTCGAAATCGGCTCGCCGGTCGGCCCGGTGCGCCAGAC
CCGGCCGGTGGTGGAGTTCCCCGGGGAGGACGCCCGCCTCGGCCCGGTGCCCGCGCTCGGCGAGCACACCGACCGCATCC
TCGGCGAACTCGGCCTCGACCCGACCGAGATCGCCGACCTGCGCGCCGCCGGCGCGATCTGA

Upstream 100 bases:

>100_bases
GTGGACGGCGAGGTCGTGGACGGTCGGGTTGTCGACGGCCGGATCGTCGACGGCCGGATCGTCGACGGTGAGGCCCGGCC
GGGCCGCTAGCCTGGCCGGT

Downstream 100 bases:

>100_bases
CGCCGGACCCCGGAGACAGACCCGGGGCGGACGAGAAGCGTGCCCCGCCTCCCGCCGGCGCGCCTTCTGGCACGCTCGGG
CGGTATGAGCTGCGTCAGCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MLPLAGVTVVSLEHAVALPFATRHLAELGARVIKVERPGQGDFARDYDRAVRGGMSAHFSWLNRSKESLTLDLKVPHARA
VLDRLIERADVVAQNLGPGAAARLGLDAATLVARRPELVAVDLSGYGPSGPYRGRKAYDMLVQAEAGLIAVTGTPDHPAK
AGFAAGDVAAGSYVIQGVLSALLRRERSGAGAALEIAMLDALTEWMGYPVQTVEHTGVELARSGIGHQSIAPYEAFRTAD
GDDVLIGVQNDGEWARLARGPLSRPELADDPDFATNQARVRNRERTDAVVAAVVATLGTAELEAGLAAAGVAYARVSTVA
GVLAHPQLAARGRWVEIGSPVGPVRQTRPVVEFPGEDARLGPVPALGEHTDRILGELGLDPTEIADLRAAGAI

Sequences:

>Translated_393_residues
MLPLAGVTVVSLEHAVALPFATRHLAELGARVIKVERPGQGDFARDYDRAVRGGMSAHFSWLNRSKESLTLDLKVPHARA
VLDRLIERADVVAQNLGPGAAARLGLDAATLVARRPELVAVDLSGYGPSGPYRGRKAYDMLVQAEAGLIAVTGTPDHPAK
AGFAAGDVAAGSYVIQGVLSALLRRERSGAGAALEIAMLDALTEWMGYPVQTVEHTGVELARSGIGHQSIAPYEAFRTAD
GDDVLIGVQNDGEWARLARGPLSRPELADDPDFATNQARVRNRERTDAVVAAVVATLGTAELEAGLAAAGVAYARVSTVA
GVLAHPQLAARGRWVEIGSPVGPVRQTRPVVEFPGEDARLGPVPALGEHTDRILGELGLDPTEIADLRAAGAI
>Mature_393_residues
MLPLAGVTVVSLEHAVALPFATRHLAELGARVIKVERPGQGDFARDYDRAVRGGMSAHFSWLNRSKESLTLDLKVPHARA
VLDRLIERADVVAQNLGPGAAARLGLDAATLVARRPELVAVDLSGYGPSGPYRGRKAYDMLVQAEAGLIAVTGTPDHPAK
AGFAAGDVAAGSYVIQGVLSALLRRERSGAGAALEIAMLDALTEWMGYPVQTVEHTGVELARSGIGHQSIAPYEAFRTAD
GDDVLIGVQNDGEWARLARGPLSRPELADDPDFATNQARVRNRERTDAVVAAVVATLGTAELEAGLAAAGVAYARVSTVA
GVLAHPQLAARGRWVEIGSPVGPVRQTRPVVEFPGEDARLGPVPALGEHTDRILGELGLDPTEIADLRAAGAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=397, Percent_Identity=31.7380352644836, Blast_Score=202, Evalue=5e-52,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=30.0236406619385, Blast_Score=188, Evalue=6e-48,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=30.050505050505, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI13376042, Length=423, Percent_Identity=27.8959810874704, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=27.75, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=27.75, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI266458397, Length=249, Percent_Identity=31.3253012048193, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI266458393, Length=249, Percent_Identity=31.3253012048193, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=36.3013698630137, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=36.3013698630137, Blast_Score=76, Evalue=5e-14,
Organism=Escherichia coli, GI87082093, Length=347, Percent_Identity=34.5821325648415, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI1788717, Length=418, Percent_Identity=28.4688995215311, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1786222, Length=407, Percent_Identity=26.7813267813268, Blast_Score=88, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=252, Percent_Identity=25, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=33.6683417085427, Blast_Score=190, Evalue=1e-48,
Organism=Drosophila melanogaster, GI24585488, Length=288, Percent_Identity=24.6527777777778, Blast_Score=81, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41233; Mature: 41233

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLAGVTVVSLEHAVALPFATRHLAELGARVIKVERPGQGDFARDYDRAVRGGMSAHFS
CCCCCCCCEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHH
WLNRSKESLTLDLKVPHARAVLDRLIERADVVAQNLGPGAAARLGLDAATLVARRPELVA
HHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHCCCCEEE
VDLSGYGPSGPYRGRKAYDMLVQAEAGLIAVTGTPDHPAKAGFAAGDVAAGSYVIQGVLS
EEECCCCCCCCCCCCHHHHHHEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALLRRERSGAGAALEIAMLDALTEWMGYPVQTVEHTGVELARSGIGHQSIAPYEAFRTAD
HHHHHHCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCC
GDDVLIGVQNDGEWARLARGPLSRPELADDPDFATNQARVRNRERTDAVVAAVVATLGTA
CCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCHH
ELEAGLAAAGVAYARVSTVAGVLAHPQLAARGRWVEIGSPVGPVRQTRPVVEFPGEDARL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEECCCCCCCHHHCCCCEECCCCCCCC
GPVPALGEHTDRILGELGLDPTEIADLRAAGAI
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MLPLAGVTVVSLEHAVALPFATRHLAELGARVIKVERPGQGDFARDYDRAVRGGMSAHFS
CCCCCCCCEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCHHHHHH
WLNRSKESLTLDLKVPHARAVLDRLIERADVVAQNLGPGAAARLGLDAATLVARRPELVA
HHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHCCCCEEE
VDLSGYGPSGPYRGRKAYDMLVQAEAGLIAVTGTPDHPAKAGFAAGDVAAGSYVIQGVLS
EEECCCCCCCCCCCCHHHHHHEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALLRRERSGAGAALEIAMLDALTEWMGYPVQTVEHTGVELARSGIGHQSIAPYEAFRTAD
HHHHHHCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCC
GDDVLIGVQNDGEWARLARGPLSRPELADDPDFATNQARVRNRERTDAVVAAVVATLGTA
CCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCHH
ELEAGLAAAGVAYARVSTVAGVLAHPQLAARGRWVEIGSPVGPVRQTRPVVEFPGEDARL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEECCCCCCCHHHCCCCEECCCCCCCC
GPVPALGEHTDRILGELGLDPTEIADLRAAGAI
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]