| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313805
Identifier: 158313805
GI number: 158313805
Start: 2367046
End: 2368635
Strand: Direct
Name: 158313805
Synonym: Franean1_1970
Alternate gene names: NA
Gene position: 2367046-2368635 (Clockwise)
Preceding gene: 158313804
Following gene: 158313807
Centisome position: 26.35
GC content: 75.35
Gene sequence:
>1590_bases ATGCCGGCTGACCAGAAGACCGCGACGTCCGTCCCGGCTGATCTGTGGTCTCGCCCGACCGGCGAGACGCGGGTCGTCGA GACGGGGAGCGCGGTCCTCTGCCTGCACGGTGATCGTGTCTACAAACGGAAGAAACCCGTTGAGCCGGGGCTCCTCGACC TGCGGAGCCGGGCGGCCCGGCTGGCGGCCTGCCGCGCCGAGGTGGAGCTGAACCGGTGGCTCGCTTCCGACGTGTACCTG GGGGTCGCCGACGTCCTCGGCGACGGCGGCGAGGTGTGCGACCATGCCGTTGTCCTGCGGCGAATGCCCACCGGCCGCCG GCTCTCCGCGCTGGTGCGCCACGCGGACCGCGTCGACGACCAGCTCCGCGCCGTCGCGCGGACGGTCGCCGCGTTCCACG AGCGGTGCGGGACGTCCGAGGTGATCGGCCGTTCCGGCGACGCCGAGGCTGTCGCGGGGCAGTGGAAGGAGACGCTCGGC GGCCTCGAGCCCTTCCAGGGGAAGGTCATCGACGCCGACGTCGTCGACGAGATCGGGCGGCTGGCGCTGCGGTACCTGGC CGGCCGCGGCCCGCTGCTGGCCGAGCGCCGGCGCGCCGGGCGGATCCGCGACGGCCACGGCGACCTGCGGGCCGAGAACA TCCACTGCCTCGACGACGGCCCGCGCATCCTGAACCGGGTCGAGTCCGACCCGCGGCTGCGGGCCGGGGACGTCCTCGGC GACGTCGCCGTTCTGGTGATGGACCTGGAGCGGCTCGGCTCGCCCGAGGACGCCGAGCGCCTGATGCGCTGGTACCGCGA CTTCTCCGCGCAGGCCCATCCGCCTTCGCTCGAGCACTTCTACATCGCCTACCGGGCCTTCACCGAGGCCCGGGTGACCT GCCTGCGGTACCGGCGGATCCTGGCCGAGGCGGGGGCGGAGGCCGGCCCGGGCCCGGGCGCCGAGGCCGGCGAACGGGCC CGGCGGCTCGCCGACATCGCCTACCGGCACCTGCGCCGGGCCCGGGTACGGCTGGTCCTGGTCGGCGGCCTGCCTGGCAC CGGGAAATCGACCCTCGCCCGGCGGCTCGCCGACGCGGACGACGGCCGCCTGCTGCTGCGCTCCGACGCCGTGCGGGCGG AGCTCGCCGCCGACGGCCACGCCGATCCGGACACCCCCGGTAGCGGGCCTGCCATCCCGGACCGGCCCGCCGTGCCCGCG GACCTCGGCGCGTCCTTCATCTGGCCGTTGTCCTCGGAGATCACCGCGCGGACCTACACGGTGCTGCTGTCCCGTGCCCG CCGGGCACTGGAACGCGGCGAGACGGTGATCATCGACGCCTCCTGGTCGGATGGCCGCCACCGCGCGGCGGCCGCGCGGC TGGCGCGCGAGACGGCCGCGGAGTTCCTCGAGCTGCGCTGCGTGACCTCACCGGAGGTCGCGGCCACGCGGCTGACCCGC CGGGACTCCGCCAGCGACCCAGCTGGCGCCACGTCCGCGGTACACCGCGCGATGAGCTCGTGGGCGGAGCCGTGGCCGAC CGCCAGGGTGATCCAGACGACCGTGCCGGTCGCCGAGGTGTTCCACGCCGCCGAGCGCTGCATCGCCTGA
Upstream 100 bases:
>100_bases CGATGGTTCCGGGCGAGACGGACCATCGACAGGACAGCGGCGATCGGATCCCGGCGGCGGGGGCGGCGGGGGCGGCGGTG TCCGGCGCGCAGGAGGTGCC
Downstream 100 bases:
>100_bases CGGGCGTCCGGCGGCCCGACGGCCGCTTTCAGGCGCTGCCGTCAGGCGTGGCGACGCGCGGCGTACACGGCGGCCTGCGT ACGGCTGCTCAGGCCCAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MPADQKTATSVPADLWSRPTGETRVVETGSAVLCLHGDRVYKRKKPVEPGLLDLRSRAARLAACRAEVELNRWLASDVYL GVADVLGDGGEVCDHAVVLRRMPTGRRLSALVRHADRVDDQLRAVARTVAAFHERCGTSEVIGRSGDAEAVAGQWKETLG GLEPFQGKVIDADVVDEIGRLALRYLAGRGPLLAERRRAGRIRDGHGDLRAENIHCLDDGPRILNRVESDPRLRAGDVLG DVAVLVMDLERLGSPEDAERLMRWYRDFSAQAHPPSLEHFYIAYRAFTEARVTCLRYRRILAEAGAEAGPGPGAEAGERA RRLADIAYRHLRRARVRLVLVGGLPGTGKSTLARRLADADDGRLLLRSDAVRAELAADGHADPDTPGSGPAIPDRPAVPA DLGASFIWPLSSEITARTYTVLLSRARRALERGETVIIDASWSDGRHRAAAARLARETAAEFLELRCVTSPEVAATRLTR RDSASDPAGATSAVHRAMSSWAEPWPTARVIQTTVPVAEVFHAAERCIA
Sequences:
>Translated_529_residues MPADQKTATSVPADLWSRPTGETRVVETGSAVLCLHGDRVYKRKKPVEPGLLDLRSRAARLAACRAEVELNRWLASDVYL GVADVLGDGGEVCDHAVVLRRMPTGRRLSALVRHADRVDDQLRAVARTVAAFHERCGTSEVIGRSGDAEAVAGQWKETLG GLEPFQGKVIDADVVDEIGRLALRYLAGRGPLLAERRRAGRIRDGHGDLRAENIHCLDDGPRILNRVESDPRLRAGDVLG DVAVLVMDLERLGSPEDAERLMRWYRDFSAQAHPPSLEHFYIAYRAFTEARVTCLRYRRILAEAGAEAGPGPGAEAGERA RRLADIAYRHLRRARVRLVLVGGLPGTGKSTLARRLADADDGRLLLRSDAVRAELAADGHADPDTPGSGPAIPDRPAVPA DLGASFIWPLSSEITARTYTVLLSRARRALERGETVIIDASWSDGRHRAAAARLARETAAEFLELRCVTSPEVAATRLTR RDSASDPAGATSAVHRAMSSWAEPWPTARVIQTTVPVAEVFHAAERCIA >Mature_528_residues PADQKTATSVPADLWSRPTGETRVVETGSAVLCLHGDRVYKRKKPVEPGLLDLRSRAARLAACRAEVELNRWLASDVYLG VADVLGDGGEVCDHAVVLRRMPTGRRLSALVRHADRVDDQLRAVARTVAAFHERCGTSEVIGRSGDAEAVAGQWKETLGG LEPFQGKVIDADVVDEIGRLALRYLAGRGPLLAERRRAGRIRDGHGDLRAENIHCLDDGPRILNRVESDPRLRAGDVLGD VAVLVMDLERLGSPEDAERLMRWYRDFSAQAHPPSLEHFYIAYRAFTEARVTCLRYRRILAEAGAEAGPGPGAEAGERAR RLADIAYRHLRRARVRLVLVGGLPGTGKSTLARRLADADDGRLLLRSDAVRAELAADGHADPDTPGSGPAIPDRPAVPAD LGASFIWPLSSEITARTYTVLLSRARRALERGETVIIDASWSDGRHRAAAARLARETAAEFLELRCVTSPEVAATRLTRR DSASDPAGATSAVHRAMSSWAEPWPTARVIQTTVPVAEVFHAAERCIA
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 57518; Mature: 57387
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPADQKTATSVPADLWSRPTGETRVVETGSAVLCLHGDRVYKRKKPVEPGLLDLRSRAAR CCCCCCCCCCCCHHHHCCCCCCCEEEECCCEEEEEECCHHHHHCCCCCCCHHHHHHHHHH LAACRAEVELNRWLASDVYLGVADVLGDGGEVCDHAVVLRRMPTGRRLSALVRHADRVDD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH QLRAVARTVAAFHERCGTSEVIGRSGDAEAVAGQWKETLGGLEPFQGKVIDADVVDEIGR HHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHH LALRYLAGRGPLLAERRRAGRIRDGHGDLRAENIHCLDDGPRILNRVESDPRLRAGDVLG HHHHHHHCCCCHHHHHHHCCCCCCCCCCCEECCEEECCCCHHHHHHCCCCCCCCHHHHHH DVAVLVMDLERLGSPEDAERLMRWYRDFSAQAHPPSLEHFYIAYRAFTEARVTCLRYRRI HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LAEAGAEAGPGPGAEAGERARRLADIAYRHLRRARVRLVLVGGLPGTGKSTLARRLADAD HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHCCC DGRLLLRSDAVRAELAADGHADPDTPGSGPAIPDRPAVPADLGASFIWPLSSEITARTYT CCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEECCCCCHHHHHHHH VLLSRARRALERGETVIIDASWSDGRHRAAAARLARETAAEFLELRCVTSPEVAATRLTR HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH RDSASDPAGATSAVHRAMSSWAEPWPTARVIQTTVPVAEVFHAAERCIA CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PADQKTATSVPADLWSRPTGETRVVETGSAVLCLHGDRVYKRKKPVEPGLLDLRSRAAR CCCCCCCCCCCHHHHCCCCCCCEEEECCCEEEEEECCHHHHHCCCCCCCHHHHHHHHHH LAACRAEVELNRWLASDVYLGVADVLGDGGEVCDHAVVLRRMPTGRRLSALVRHADRVDD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH QLRAVARTVAAFHERCGTSEVIGRSGDAEAVAGQWKETLGGLEPFQGKVIDADVVDEIGR HHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHH LALRYLAGRGPLLAERRRAGRIRDGHGDLRAENIHCLDDGPRILNRVESDPRLRAGDVLG HHHHHHHCCCCHHHHHHHCCCCCCCCCCCEECCEEECCCCHHHHHHCCCCCCCCHHHHHH DVAVLVMDLERLGSPEDAERLMRWYRDFSAQAHPPSLEHFYIAYRAFTEARVTCLRYRRI HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LAEAGAEAGPGPGAEAGERARRLADIAYRHLRRARVRLVLVGGLPGTGKSTLARRLADAD HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHCCC DGRLLLRSDAVRAELAADGHADPDTPGSGPAIPDRPAVPADLGASFIWPLSSEITARTYT CCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEECCCCCHHHHHHHH VLLSRARRALERGETVIIDASWSDGRHRAAAARLARETAAEFLELRCVTSPEVAATRLTR HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH RDSASDPAGATSAVHRAMSSWAEPWPTARVIQTTVPVAEVFHAAERCIA CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]