| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is lnt [H]
Identifier: 158313704
GI number: 158313704
Start: 2243955
End: 2245592
Strand: Direct
Name: lnt [H]
Synonym: Franean1_1868
Alternate gene names: 158313704
Gene position: 2243955-2245592 (Clockwise)
Preceding gene: 158313701
Following gene: 158313707
Centisome position: 24.98
GC content: 73.69
Gene sequence:
>1638_bases ATGGCCAGCAGCGCCGGCCGCCCCGTGTCCGTCGACGCGGGCGGGCATGTGCGGCTGGTGCCGACCCGGTGGTCCCGGTG GCGGTACCGGGCGCTGTCCGCGTTGCTCGGGGCGGTGCCCGCCGTGGCGTTCCCCGCGCTGTCGGCATGGCCGGTCGGCT TCGTCGGGATGGTGCCGGCAACCCTGGTGATCGTGGCGGCCACCGTCCCGCGGGAGGCGGCGATCCGTGCCTGGTGCGGC GGTACCGGGTTCTTCCTGGCGACCTGCTATTGGCTGGTTCCGAACACCGGTCCGTTCATCGTCGTCCTCGGCCTGGCGCT CGGCGTCACCTGGATGCTGTGGGGCGTCCTGGTCTGGACGGCGCTGCGCCCCCGGCTGCCCTCCCAACCGCCCGGGTACC GCCGTCTCGCCTGGGCGCTGGTCGCCGTCCCGTCCGGCTGGGTGATCGGGGAGTTCGCCCGGTCGTGGGAGGGCTTCGGT GGGCCGTGGGCGCTGCTCGGTGCCAGCCAGTGGAACGCCCGACCGTTTCTGCCGCTGGCCGCCGTCGGCGGGGTGTGGCT GCTGAGCTTCCTGCTCGCCGCCGTCAACCTGCTGGTGGCTGCGGCGGTCATGCCGGGCCTGCGGCCGGGGCGGCGGCGAC CGTGGCGGGCCGGCGTCGCGCTAGCAGCCGGCCTGCTCGTTGCCGTGATGGTGGCCGGTGCGGCGGCCGTGCCCACCCCG GCCAACACCGGCACGCTCACCGTTGGTGGCGTCCAGCCAGGCGTCGTCCACGGTGCCGACGTGCGGTTCGCCGACGGTGA GGCGGCCACCAGAAGCCTGGTCGGCGCCGGGGTCGACCTGGTGGTGTGGGGGGAGAGCAGCGTCGGGTTCGACCTCGTCG ACGACCAGGCACGGCTGCGCCAGCTCGAGGATCTGTCCCGCATGCTCGGTGTCCCGGTCTTGGTCAACACCGATGCGCGG CGTGCTGATGAGGTCGCCGGCCCCGACGATGGGGACGGGGGGATCTACAAGTCGGCAGTGCTGGTCGGACCGGACGGCCC GCGCGGGCGGTACGACAAGATGCGGCTGGTGCCGTTCGGGGAGTACATCCCCCTGCGCCCCGTCTTCGGTTGGCTGACCG CGGTGACCGAGGCAGCCGCCGAGAACCGCCGCAAGGGTGTCCGGCTTACCGTGCTCGCCGCGGGGAAACTGGACGGCAGG ACGATCCGGCTCGGTCCGCTGGTCTGCTTCGAGTCGGCCTTCCCGGACATGACTCTCCGTCTGGCGAACGACGGCGCGGA CGTGGTCGTCGTCCAGTCGGCCACCTCGACCTTCCAGGACAGCTGGGCACCCGATCAGCACGCCAGCCTCGCCGCGCTGC GGGCGGTCGAGGCGGGACGGCCTGTCCTTCACGCCACGCTGACCGGCGTGTCCACCGCCTTCGACGCCTCCGGCCGGCAG TTGTTCCGCCTGGGCAGGGACGGGCGCGGCGCCTATGTCGTAGACCTGCCGCTGACCAGCGCGACCGGCACCCCGTATGC CCGCCTCGGCGACTGGGTGCCCCTCGGCTCGCTCGCCATCGTCGCGGCCGTCGCGCTCGATGCCGCGGTGCTGCGGGCGG TCCGTCTGCACCGCGCCAGGCGCTCCACGACGGGGTGA
Upstream 100 bases:
>100_bases GTCGGGCCAGGGCCGAGTGGTTCTCCGCCTTCGGCGAGCGGGAGTGGCCGGGCGGGCTCCTCCGGGCGCACGCCGCCGGG CCCGGTAGCACCATCGAGAC
Downstream 100 bases:
>100_bases TTCGGGGTGGCAGGGCGGGTAGGGGTACCGCAAATTTTAGTTCGCGCGGCTCCTGGTCAGGGAAGGGCCCACAGCCGTAT TGTGTTGTCCTTGCTGCCGC
Product: apolipoprotein N-acyltransferase
Products: NA
Alternate protein names: ALP N-acyltransferase [H]
Number of amino acids: Translated: 545; Mature: 544
Protein sequence:
>545_residues MASSAGRPVSVDAGGHVRLVPTRWSRWRYRALSALLGAVPAVAFPALSAWPVGFVGMVPATLVIVAATVPREAAIRAWCG GTGFFLATCYWLVPNTGPFIVVLGLALGVTWMLWGVLVWTALRPRLPSQPPGYRRLAWALVAVPSGWVIGEFARSWEGFG GPWALLGASQWNARPFLPLAAVGGVWLLSFLLAAVNLLVAAAVMPGLRPGRRRPWRAGVALAAGLLVAVMVAGAAAVPTP ANTGTLTVGGVQPGVVHGADVRFADGEAATRSLVGAGVDLVVWGESSVGFDLVDDQARLRQLEDLSRMLGVPVLVNTDAR RADEVAGPDDGDGGIYKSAVLVGPDGPRGRYDKMRLVPFGEYIPLRPVFGWLTAVTEAAAENRRKGVRLTVLAAGKLDGR TIRLGPLVCFESAFPDMTLRLANDGADVVVVQSATSTFQDSWAPDQHASLAALRAVEAGRPVLHATLTGVSTAFDASGRQ LFRLGRDGRGAYVVDLPLTSATGTPYARLGDWVPLGSLAIVAAVALDAAVLRAVRLHRARRSTTG
Sequences:
>Translated_545_residues MASSAGRPVSVDAGGHVRLVPTRWSRWRYRALSALLGAVPAVAFPALSAWPVGFVGMVPATLVIVAATVPREAAIRAWCG GTGFFLATCYWLVPNTGPFIVVLGLALGVTWMLWGVLVWTALRPRLPSQPPGYRRLAWALVAVPSGWVIGEFARSWEGFG GPWALLGASQWNARPFLPLAAVGGVWLLSFLLAAVNLLVAAAVMPGLRPGRRRPWRAGVALAAGLLVAVMVAGAAAVPTP ANTGTLTVGGVQPGVVHGADVRFADGEAATRSLVGAGVDLVVWGESSVGFDLVDDQARLRQLEDLSRMLGVPVLVNTDAR RADEVAGPDDGDGGIYKSAVLVGPDGPRGRYDKMRLVPFGEYIPLRPVFGWLTAVTEAAAENRRKGVRLTVLAAGKLDGR TIRLGPLVCFESAFPDMTLRLANDGADVVVVQSATSTFQDSWAPDQHASLAALRAVEAGRPVLHATLTGVSTAFDASGRQ LFRLGRDGRGAYVVDLPLTSATGTPYARLGDWVPLGSLAIVAAVALDAAVLRAVRLHRARRSTTG >Mature_544_residues ASSAGRPVSVDAGGHVRLVPTRWSRWRYRALSALLGAVPAVAFPALSAWPVGFVGMVPATLVIVAATVPREAAIRAWCGG TGFFLATCYWLVPNTGPFIVVLGLALGVTWMLWGVLVWTALRPRLPSQPPGYRRLAWALVAVPSGWVIGEFARSWEGFGG PWALLGASQWNARPFLPLAAVGGVWLLSFLLAAVNLLVAAAVMPGLRPGRRRPWRAGVALAAGLLVAVMVAGAAAVPTPA NTGTLTVGGVQPGVVHGADVRFADGEAATRSLVGAGVDLVVWGESSVGFDLVDDQARLRQLEDLSRMLGVPVLVNTDARR ADEVAGPDDGDGGIYKSAVLVGPDGPRGRYDKMRLVPFGEYIPLRPVFGWLTAVTEAAAENRRKGVRLTVLAAGKLDGRT IRLGPLVCFESAFPDMTLRLANDGADVVVVQSATSTFQDSWAPDQHASLAALRAVEAGRPVLHATLTGVSTAFDASGRQL FRLGRDGRGAYVVDLPLTSATGTPYARLGDWVPLGSLAIVAAVALDAAVLRAVRLHRARRSTTG
Specific function: Transfers the fatty acyl group on membrane lipoproteins [H]
COG id: COG0815
COG function: function code M; Apolipoprotein N-acyltransferase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CN hydrolase domain [H]
Homologues:
Organism=Escherichia coli, GI1786878, Length=556, Percent_Identity=26.4388489208633, Blast_Score=117, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004563 - InterPro: IPR003010 [H]
Pfam domain/function: PF00795 CN_hydrolase [H]
EC number: 2.3.1.- [C]
Molecular weight: Translated: 57287; Mature: 57156
Theoretical pI: Translated: 10.86; Mature: 10.86
Prosite motif: PS50263 CN_HYDROLASE ; PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSAGRPVSVDAGGHVRLVPTRWSRWRYRALSALLGAVPAVAFPALSAWPVGFVGMVPA CCCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH TLVIVAATVPREAAIRAWCGGTGFFLATCYWLVPNTGPFIVVLGLALGVTWMLWGVLVWT HHHHHEECCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ALRPRLPSQPPGYRRLAWALVAVPSGWVIGEFARSWEGFGGPWALLGASQWNARPFLPLA HHCCCCCCCCCCHHHHHEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHH AVGGVWLLSFLLAAVNLLVAAAVMPGLRPGRRRPWRAGVALAAGLLVAVMVAGAAAVPTP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC ANTGTLTVGGVQPGVVHGADVRFADGEAATRSLVGAGVDLVVWGESSVGFDLVDDQARLR CCCCEEEECCCCCCEEECCCEEECCCHHHHHHHHHCCCEEEEECCCCCCCEEECCHHHHH QLEDLSRMLGVPVLVNTDARRADEVAGPDDGDGGIYKSAVLVGPDGPRGRYDKMRLVPFG HHHHHHHHHCCCEEEECCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECC EYIPLRPVFGWLTAVTEAAAENRRKGVRLTVLAAGKLDGRTIRLGPLVCFESAFPDMTLR CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCEEEEHHCCCCEEEE LANDGADVVVVQSATSTFQDSWAPDQHASLAALRAVEAGRPVLHATLTGVSTAFDASGRQ EECCCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCHH LFRLGRDGRGAYVVDLPLTSATGTPYARLGDWVPLGSLAIVAAVALDAAVLRAVRLHRAR HHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RSTTG HCCCC >Mature Secondary Structure ASSAGRPVSVDAGGHVRLVPTRWSRWRYRALSALLGAVPAVAFPALSAWPVGFVGMVPA CCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH TLVIVAATVPREAAIRAWCGGTGFFLATCYWLVPNTGPFIVVLGLALGVTWMLWGVLVWT HHHHHEECCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ALRPRLPSQPPGYRRLAWALVAVPSGWVIGEFARSWEGFGGPWALLGASQWNARPFLPLA HHCCCCCCCCCCHHHHHEEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHH AVGGVWLLSFLLAAVNLLVAAAVMPGLRPGRRRPWRAGVALAAGLLVAVMVAGAAAVPTP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC ANTGTLTVGGVQPGVVHGADVRFADGEAATRSLVGAGVDLVVWGESSVGFDLVDDQARLR CCCCEEEECCCCCCEEECCCEEECCCHHHHHHHHHCCCEEEEECCCCCCCEEECCHHHHH QLEDLSRMLGVPVLVNTDARRADEVAGPDDGDGGIYKSAVLVGPDGPRGRYDKMRLVPFG HHHHHHHHHCCCEEEECCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECC EYIPLRPVFGWLTAVTEAAAENRRKGVRLTVLAAGKLDGRTIRLGPLVCFESAFPDMTLR CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCEEEEHHCCCCEEEE LANDGADVVVVQSATSTFQDSWAPDQHASLAALRAVEAGRPVLHATLTGVSTAFDASGRQ EECCCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCHH LFRLGRDGRGAYVVDLPLTSATGTPYARLGDWVPLGSLAIVAAVALDAAVLRAVRLHRAR HHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RSTTG HCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Transferring groups other than amino-acyl groups [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA