| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313651
Identifier: 158313651
GI number: 158313651
Start: 2178766
End: 2179176
Strand: Direct
Name: 158313651
Synonym: Franean1_1815
Alternate gene names: NA
Gene position: 2178766-2179176 (Clockwise)
Preceding gene: 158313648
Following gene: 158313653
Centisome position: 24.26
GC content: 69.83
Gene sequence:
>411_bases ATGGCCAGTGTCTTCACCCGGATCATCAACGGCGAGCTCCCGGGCCGCATCGTCTACTCGGACGAGTCGGCGGTCGCGTT CCTCTCCATCGCGCCCGTCCGCCCCGGGCACACGCTCATCGTGCCCCGCCTGGAGATCGATCACTGGATCGATCTGCCGG ACGAGACGGTGCGCGCGGTGTGGAGTGCCGCGGCTGTCGTCGGGCGGGCCATAGACACGGTGTTCAAGCCACGGCGGGTC GCGGCGATGCTCGCCGGGATGGAGGTGCCGCACGCCCACATCCACCTTTTCCCGATCGACACGGAGTCGCAGATGAGCTT CGCGCTCGCCGACCACAACCCCGATCCGGCGATGATGGACGACGTCGCCGAGCGCCTGCGGGCGGCCCTGGCGGAGCCGC GCCGGGTCTAG
Upstream 100 bases:
>100_bases TCCGCCTGGCCGGCCGCGCTCACCAGAGGCTTCCCGGACCGACCGTGACCCCGGCGTCCGCGGGCGGGTGCCGCGCGGTC GATCTCGGTAGGGTCCGGCC
Downstream 100 bases:
>100_bases ATCCGGCCACGCCGGGTCCGGAGCGAGCCGCGCCGGTTGTGGCGGAGCCGAGTCGGGCTCTGCCACGGGTGCCGCCGAGG CCCCGTCCGTGCCCGTTCAC
Product: histidine triad (HIT) protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MASVFTRIINGELPGRIVYSDESAVAFLSIAPVRPGHTLIVPRLEIDHWIDLPDETVRAVWSAAAVVGRAIDTVFKPRRV AAMLAGMEVPHAHIHLFPIDTESQMSFALADHNPDPAMMDDVAERLRAALAEPRRV
Sequences:
>Translated_136_residues MASVFTRIINGELPGRIVYSDESAVAFLSIAPVRPGHTLIVPRLEIDHWIDLPDETVRAVWSAAAVVGRAIDTVFKPRRV AAMLAGMEVPHAHIHLFPIDTESQMSFALADHNPDPAMMDDVAERLRAALAEPRRV >Mature_135_residues ASVFTRIINGELPGRIVYSDESAVAFLSIAPVRPGHTLIVPRLEIDHWIDLPDETVRAVWSAAAVVGRAIDTVFKPRRVA AMLAGMEVPHAHIHLFPIDTESQMSFALADHNPDPAMMDDVAERLRAALAEPRRV
Specific function: Unknown
COG id: COG0537
COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HIT domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011146 - InterPro: IPR011151 - InterPro: IPR019808 - InterPro: IPR001310 [H]
Pfam domain/function: PF01230 HIT [H]
EC number: NA
Molecular weight: Translated: 14983; Mature: 14852
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: PS51084 HIT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASVFTRIINGELPGRIVYSDESAVAFLSIAPVRPGHTLIVPRLEIDHWIDLPDETVRAV CHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHH WSAAAVVGRAIDTVFKPRRVAAMLAGMEVPHAHIHLFPIDTESQMSFALADHNPDPAMMD HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHH DVAERLRAALAEPRRV HHHHHHHHHHCCCCCC >Mature Secondary Structure ASVFTRIINGELPGRIVYSDESAVAFLSIAPVRPGHTLIVPRLEIDHWIDLPDETVRAV HHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHH WSAAAVVGRAIDTVFKPRRVAAMLAGMEVPHAHIHLFPIDTESQMSFALADHNPDPAMMD HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHH DVAERLRAALAEPRRV HHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]