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The map label for this gene is xerD [H]

Identifier: 158313594

GI number: 158313594

Start: 2108476

End: 2109627

Strand: Direct

Name: xerD [H]

Synonym: Franean1_1758

Alternate gene names: 158313594

Gene position: 2108476-2109627 (Clockwise)

Preceding gene: 158313591

Following gene: 158313596

Centisome position: 23.47

GC content: 77.08

Gene sequence:

>1152_bases
ATGATGACCACGGTGGAAGGCGGCGACGCCCGCCGCGGTGGGCCGCCGGGCGATCCGGCCGGCCCGGTCCAGGTCATCGA
GCGTTACCTGGACCACGTCGACGGCGAGCGCGGGCTGGCCCGGAACTCGGTGCTGGCCTACCGCCGTGACCTGCGCCGCT
ACCGCGAGCACCTGGCGGCCGGCGGGATCACCTCGCTGGCGGCGGTGGGGGAGGCGCAGATCGCGGAGTTCGCCGCCGCC
CTGCGGGAGGGCGACGAGACCCATCCGCCGCTCGCCCCGGCGTCGGTGGCCCGGATGCTGGTCGCGGTCCGGTCGCTGCA
CCGGTTCGCCGCGCAGGAGGGCGACGTCAGCGAGGACGTGGCCCGTCCGGTCCGGCCGCCGGTGCCGCCCAGGCGGCTGC
CGCGGGCGCTCACCGTCGACCAGGTGAGCGCGGTCATCGCCGCCGCGGTGGCCGGCGGCCCGGAGTACGCGGAGGTCTCC
GGCGGCGACCCGGCGGAGCTGGCCCGGCGGCTGCGCTCCGCGGCCCTGCTCGAACTGCTCTACGGGACGGGCGCGCGGAT
CTCCGAGGCCGTCGGGCTGGATCTGGACGATCTCGACCTGGACCGGTCCGCGGTGCGGCTGCGGGGCAAGGGCGGGCGGG
ACAGGGTCGTCCCGCTCGGCCGGTACGCGGTGACCGCGCTGGAACGCTACCTGCGGCGCGGACGGCCGCATCTGGTCACC
GAGTGCTCGGGGACGGCGGTCTTCGTCTCGCGCCGGGGGAACCGGCTGTCCCGGCAGAGCGCGTGGTCGGCGCTGCGCGC
GGCGGCGAACGCGGCCGGCGTTCCCGGGGCGTCGCCGCACGTGCTGCGGCACTCGTTCGCGACCCACCTGCTCGACGGCG
GCGCGGATGTCCGGGTGGTGCAGGAGCTGCTGGGGCATGCCTCGGTCAGCACGACCCAGATCTACACGCTGGTCACGATG
GACCATCTGCGTGAGGTGTACGCGTCGTCCCACCCGCGGGCCCTGCGACGCCCGCCCGGGTTCGGGTATCCGTCCGCGCC
GGGCACGGGCGGCGCGGTGCCCGGCCCCGACCTGGCCGCGGCGGACGCCGGCCTGGTGGCACCCGGTGCGGACCAGGTCG
TTCCTCCGCGCCCTGCCGCCGGCACCCCGTGA

Upstream 100 bases:

>100_bases
AATACAATGCCCGTCCGCACAAGCTGTCACGATAGACGCTCGACGGCGACGTGGGACGGGCAACGGCGAACCGTCGCAGC
CGCGTCCTAATATCAGTTCG

Downstream 100 bases:

>100_bases
CGGGCACCCCGTTGTCGGGTGCCCTTTGAACGGTCGGCCGCCCATGGGTGACCGACACGCGCGACGATGACCCCGGGCGA
CCCATGAGGTCGACCGGCCT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MMTTVEGGDARRGGPPGDPAGPVQVIERYLDHVDGERGLARNSVLAYRRDLRRYREHLAAGGITSLAAVGEAQIAEFAAA
LREGDETHPPLAPASVARMLVAVRSLHRFAAQEGDVSEDVARPVRPPVPPRRLPRALTVDQVSAVIAAAVAGGPEYAEVS
GGDPAELARRLRSAALLELLYGTGARISEAVGLDLDDLDLDRSAVRLRGKGGRDRVVPLGRYAVTALERYLRRGRPHLVT
ECSGTAVFVSRRGNRLSRQSAWSALRAAANAAGVPGASPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTM
DHLREVYASSHPRALRRPPGFGYPSAPGTGGAVPGPDLAAADAGLVAPGADQVVPPRPAAGTP

Sequences:

>Translated_383_residues
MMTTVEGGDARRGGPPGDPAGPVQVIERYLDHVDGERGLARNSVLAYRRDLRRYREHLAAGGITSLAAVGEAQIAEFAAA
LREGDETHPPLAPASVARMLVAVRSLHRFAAQEGDVSEDVARPVRPPVPPRRLPRALTVDQVSAVIAAAVAGGPEYAEVS
GGDPAELARRLRSAALLELLYGTGARISEAVGLDLDDLDLDRSAVRLRGKGGRDRVVPLGRYAVTALERYLRRGRPHLVT
ECSGTAVFVSRRGNRLSRQSAWSALRAAANAAGVPGASPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTM
DHLREVYASSHPRALRRPPGFGYPSAPGTGGAVPGPDLAAADAGLVAPGADQVVPPRPAAGTP
>Mature_383_residues
MMTTVEGGDARRGGPPGDPAGPVQVIERYLDHVDGERGLARNSVLAYRRDLRRYREHLAAGGITSLAAVGEAQIAEFAAA
LREGDETHPPLAPASVARMLVAVRSLHRFAAQEGDVSEDVARPVRPPVPPRRLPRALTVDQVSAVIAAAVAGGPEYAEVS
GGDPAELARRLRSAALLELLYGTGARISEAVGLDLDDLDLDRSAVRLRGKGGRDRVVPLGRYAVTALERYLRRGRPHLVT
ECSGTAVFVSRRGNRLSRQSAWSALRAAANAAGVPGASPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTM
DHLREVYASSHPRALRRPPGFGYPSAPGTGGAVPGPDLAAADAGLVAPGADQVVPPRPAAGTP

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=311, Percent_Identity=41.1575562700965, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1790244, Length=315, Percent_Identity=34.6031746031746, Blast_Score=170, Evalue=2e-43,
Organism=Escherichia coli, GI1790768, Length=184, Percent_Identity=35.8695652173913, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790767, Length=149, Percent_Identity=35.5704697986577, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40225; Mature: 40225

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTTVEGGDARRGGPPGDPAGPVQVIERYLDHVDGERGLARNSVLAYRRDLRRYREHLAA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GGITSLAAVGEAQIAEFAAALREGDETHPPLAPASVARMLVAVRSLHRFAAQEGDVSEDV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ARPVRPPVPPRRLPRALTVDQVSAVIAAAVAGGPEYAEVSGGDPAELARRLRSAALLELL
HCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
YGTGARISEAVGLDLDDLDLDRSAVRLRGKGGRDRVVPLGRYAVTALERYLRRGRPHLVT
HCCCCHHHHHHCCCCHHCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
ECSGTAVFVSRRGNRLSRQSAWSALRAAANAAGVPGASPHVLRHSFATHLLDGGADVRVV
ECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
QELLGHASVSTTQIYTLVTMDHLREVYASSHPRALRRPPGFGYPSAPGTGGAVPGPDLAA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHH
ADAGLVAPGADQVVPPRPAAGTP
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMTTVEGGDARRGGPPGDPAGPVQVIERYLDHVDGERGLARNSVLAYRRDLRRYREHLAA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GGITSLAAVGEAQIAEFAAALREGDETHPPLAPASVARMLVAVRSLHRFAAQEGDVSEDV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ARPVRPPVPPRRLPRALTVDQVSAVIAAAVAGGPEYAEVSGGDPAELARRLRSAALLELL
HCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
YGTGARISEAVGLDLDDLDLDRSAVRLRGKGGRDRVVPLGRYAVTALERYLRRGRPHLVT
HCCCCHHHHHHCCCCHHCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
ECSGTAVFVSRRGNRLSRQSAWSALRAAANAAGVPGASPHVLRHSFATHLLDGGADVRVV
ECCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
QELLGHASVSTTQIYTLVTMDHLREVYASSHPRALRRPPGFGYPSAPGTGGAVPGPDLAA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHH
ADAGLVAPGADQVVPPRPAAGTP
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]