| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313581
Identifier: 158313581
GI number: 158313581
Start: 2085476
End: 2086150
Strand: Direct
Name: 158313581
Synonym: Franean1_1745
Alternate gene names: NA
Gene position: 2085476-2086150 (Clockwise)
Preceding gene: 158313580
Following gene: 158313582
Centisome position: 23.22
GC content: 75.26
Gene sequence:
>675_bases GTGGGCCGGGAGCTGACCGGCGTTCCGAGTCGCGACTTCTACGACCGGCCCGTGCTGGCCGTCGCCCGAGATCTCCTCGG GACGACGGTCCGGCACGGGCCGGTCGCGTTGCGGGTCACCGAGGTGGAGGCCTACGGCGGCACGGACGATCCGGCGTCCC ATGCCTTCCGCGGTCCGACCCCGCGCTCGCGGGTCATGTTCGGACCGCCCGGACACGCCTACGTCTACTTCGTCTACGGC ATGCACTGGTGTTTCAACGTCGTGTGCGGTCCGGAGGGTACGGCCGCCGCGGTTCTGATCCGGGCTGGTGCGGTCGCCGG GTCCGTCCCGGCCCGGCATGTTCCGGGCAGCGCCCGCCAGCCGGAGCCCGAGCCCGGGCTTGAGTCCGCGTCCGGGGCCG GGAGCGCGGGAGCGGGGGGCGCCGCGGCCGCCTGGCGCGTCGCGAGCGGGCCTGGACGCTTCGCCCGGGCCCTGGGGGTG GACGGCGGCTTCACCGGCACCGACCTCGTCGGATCCGGCCCGGTGACGGTTCACTCCGGAGCACCCGTTGCCGAGACCCA GGTGGGCCGTGGTCCCCGGATCGGCATCCGGACGGGCCTCGACCGCCCGTACCGGCTCTGGATCCTGAACGAGCCGTCGG TGAGCTGGGGCCGGCCCCCGCGGACGCCCGCCTGA
Upstream 100 bases:
>100_bases GTGGTGCGCTCGAGGCACGCTCGGCACCGGGCGGGACGGCTCCCGCGCGCGTCCGGGAGCAGATCGAGGCGCTCGGGCCG GTGCTCGACCGGGACCGGGC
Downstream 100 bases:
>100_bases GGCGCGTGGCCTGAGACGCCCGGAGTGTGAGACGCCCGGACTGAAGCGCGTGGCCTGCGACGGCCCGACCGAACCCGCAC AGACCGACGCGTACGGACTG
Product: DNA-3-methyladenine glycosylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MGRELTGVPSRDFYDRPVLAVARDLLGTTVRHGPVALRVTEVEAYGGTDDPASHAFRGPTPRSRVMFGPPGHAYVYFVYG MHWCFNVVCGPEGTAAAVLIRAGAVAGSVPARHVPGSARQPEPEPGLESASGAGSAGAGGAAAAWRVASGPGRFARALGV DGGFTGTDLVGSGPVTVHSGAPVAETQVGRGPRIGIRTGLDRPYRLWILNEPSVSWGRPPRTPA
Sequences:
>Translated_224_residues MGRELTGVPSRDFYDRPVLAVARDLLGTTVRHGPVALRVTEVEAYGGTDDPASHAFRGPTPRSRVMFGPPGHAYVYFVYG MHWCFNVVCGPEGTAAAVLIRAGAVAGSVPARHVPGSARQPEPEPGLESASGAGSAGAGGAAAAWRVASGPGRFARALGV DGGFTGTDLVGSGPVTVHSGAPVAETQVGRGPRIGIRTGLDRPYRLWILNEPSVSWGRPPRTPA >Mature_223_residues GRELTGVPSRDFYDRPVLAVARDLLGTTVRHGPVALRVTEVEAYGGTDDPASHAFRGPTPRSRVMFGPPGHAYVYFVYGM HWCFNVVCGPEGTAAAVLIRAGAVAGSVPARHVPGSARQPEPEPGLESASGAGSAGAGGAAAAWRVASGPGRFARALGVD GGFTGTDLVGSGPVTVHSGAPVAETQVGRGPRIGIRTGLDRPYRLWILNEPSVSWGRPPRTPA
Specific function: Unknown
COG id: COG2094
COG function: function code L; 3-methyladenine DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA glycosylase MPG family [H]
Homologues:
Organism=Homo sapiens, GI62632769, Length=179, Percent_Identity=33.5195530726257, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI62632765, Length=179, Percent_Identity=33.5195530726257, Blast_Score=85, Evalue=4e-17, Organism=Homo sapiens, GI62632771, Length=179, Percent_Identity=33.5195530726257, Blast_Score=85, Evalue=4e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011034 - InterPro: IPR003180 [H]
Pfam domain/function: PF02245 Pur_DNA_glyco [H]
EC number: 3.2.2.-
Molecular weight: Translated: 23126; Mature: 22995
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRELTGVPSRDFYDRPVLAVARDLLGTTVRHGPVALRVTEVEAYGGTDDPASHAFRGPT CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHCCCCCCC PRSRVMFGPPGHAYVYFVYGMHWCFNVVCGPEGTAAAVLIRAGAVAGSVPARHVPGSARQ CCCEEEECCCCCEEEEEEEEHHHHEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCC PEPEPGLESASGAGSAGAGGAAAAWRVASGPGRFARALGVDGGFTGTDLVGSGPVTVHSG CCCCCCCCCCCCCCCCCCCCCHHEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCEEEECC APVAETQVGRGPRIGIRTGLDRPYRLWILNEPSVSWGRPPRTPA CCCHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure GRELTGVPSRDFYDRPVLAVARDLLGTTVRHGPVALRVTEVEAYGGTDDPASHAFRGPT CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHCCCCCCC PRSRVMFGPPGHAYVYFVYGMHWCFNVVCGPEGTAAAVLIRAGAVAGSVPARHVPGSARQ CCCEEEECCCCCEEEEEEEEHHHHEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCC PEPEPGLESASGAGSAGAGGAAAAWRVASGPGRFARALGVDGGFTGTDLVGSGPVTVHSG CCCCCCCCCCCCCCCCCCCCCHHEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCEEEECC APVAETQVGRGPRIGIRTGLDRPYRLWILNEPSVSWGRPPRTPA CCCHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA