| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313563
Identifier: 158313563
GI number: 158313563
Start: 2064427
End: 2065602
Strand: Direct
Name: 158313563
Synonym: Franean1_1727
Alternate gene names: NA
Gene position: 2064427-2065602 (Clockwise)
Preceding gene: 158313562
Following gene: 158313564
Centisome position: 22.98
GC content: 79.17
Gene sequence:
>1176_bases GTGTCCCCCGACCTGCTGACGCCACCCGGGCAGGGTGACCACGGCCGCGCCGACTCCGCGTTGCTGGCGGCCCTGCGCTC AGGCGACCGTGCCGCGCTCACCGCGGCGCTTCCTGGCGCCCGGGTGTTCGTCGGGGTCGAGGCCCGGGCTCTCGCCACCG ACGCGCTGACCGGCGCGGACAAGAAGAGCGACATGGTCCTGGTCACCCTGCGTACGCCGTCCGGCTCCGGTGCGCTGCCG GTGTTCAGCGCGGTGGACGTGATGGCGGCCTGGCGCCCCTCGGTGCGCCCCGTTCCCGTGACGCTGCCCGACGCGTGCGC GGAGGCCGTCCGGATGGGCCTGGCCGCCGTCGTGATCGACCTCGGCGGCCCGGCCCCGGTCACCCTGGATGTCCGGCCCG CCGCCGGGGATGTCGGCGGCGGGGTCGGCCGGCGTGGCCCGCGGCCCTTCGGCGGCGGCGAGGGCATGTGGATCTCGTCG GGCGAGCCGGGGACGTCCGCCGCCATGCGGGGCGCGGCGGGCCCAGCGGCCGCTGGCGCCGACGGCCACGCGGACGAGCT GATCGTCGCGGCAGACTCCGGGGGTGGTCTGCTCCGCCCGCGCCCGGTGCCGCTCGGCGCGCGGGGCCGTCGGCGGATCC GCGCCGCGCTCGCCGGCCTGCCGCCGGAGACGGAGGTCTGGCCGGCGGAGCTGGCGGAGTCGATCGGGCAGCGCTGGCCG GCCCGCCCGGTCCTCGCCGTCGCGGTGAACGGCGCCGCCGGTACCGCCGCTGCCGCCGGTGCCGCCGCGGCTGGTGCCGG TGCCACCGCGGGTGCCGCGGGCGCCGCGGGCAGGGCCGGGAGCCGGGACGCCGTCGACCGCGGGCACCTCGAGAATCCAG GCGACACGGAGAATCCAGACGGCACCGGCGATTTCGGGGGTGCGGGGGATTTCGGGGACACCGGGGCGGCCGGGGGCGCG GCTCCCGGGGGTGACGACATGATCACCGAGATCGTGCGCCGGCTCCGCCTGCTGATCGAGGACGGGCCCGGCGGATCCGC GGCGGGCGGCGGGAGCGCGGAGGCCGCCGTGCTCGTCGTCGACCCCACCGAGGTGCCAGCGGTGCGCGCCCATCTCGGCC GCGGGGTGCGCCCCCCGCGGCGTTCGCTGTTCCGCCGTCGGGACGGCCGCGCCTGA
Upstream 100 bases:
>100_bases CGACCGCGCGGCCGTAGGCGCCGGACACCTGGCCGCTTACCCCTCCAAAGGCGACGGGTGTGGTCCCGGAGCGCCACTTT CACGCACTACAGTCGATGGG
Downstream 100 bases:
>100_bases CCTGTGGCCGCGTGGCCGGCGCAGGTCGGTCGGGTTCGAGTGGACATCCCGCGGGCCCGGACCCGCTCCGCCGCGGTGCC CGGCCGGCCGCGGTGCCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 391; Mature: 390
Protein sequence:
>391_residues MSPDLLTPPGQGDHGRADSALLAALRSGDRAALTAALPGARVFVGVEARALATDALTGADKKSDMVLVTLRTPSGSGALP VFSAVDVMAAWRPSVRPVPVTLPDACAEAVRMGLAAVVIDLGGPAPVTLDVRPAAGDVGGGVGRRGPRPFGGGEGMWISS GEPGTSAAMRGAAGPAAAGADGHADELIVAADSGGGLLRPRPVPLGARGRRRIRAALAGLPPETEVWPAELAESIGQRWP ARPVLAVAVNGAAGTAAAAGAAAAGAGATAGAAGAAGRAGSRDAVDRGHLENPGDTENPDGTGDFGGAGDFGDTGAAGGA APGGDDMITEIVRRLRLLIEDGPGGSAAGGGSAEAAVLVVDPTEVPAVRAHLGRGVRPPRRSLFRRRDGRA
Sequences:
>Translated_391_residues MSPDLLTPPGQGDHGRADSALLAALRSGDRAALTAALPGARVFVGVEARALATDALTGADKKSDMVLVTLRTPSGSGALP VFSAVDVMAAWRPSVRPVPVTLPDACAEAVRMGLAAVVIDLGGPAPVTLDVRPAAGDVGGGVGRRGPRPFGGGEGMWISS GEPGTSAAMRGAAGPAAAGADGHADELIVAADSGGGLLRPRPVPLGARGRRRIRAALAGLPPETEVWPAELAESIGQRWP ARPVLAVAVNGAAGTAAAAGAAAAGAGATAGAAGAAGRAGSRDAVDRGHLENPGDTENPDGTGDFGGAGDFGDTGAAGGA APGGDDMITEIVRRLRLLIEDGPGGSAAGGGSAEAAVLVVDPTEVPAVRAHLGRGVRPPRRSLFRRRDGRA >Mature_390_residues SPDLLTPPGQGDHGRADSALLAALRSGDRAALTAALPGARVFVGVEARALATDALTGADKKSDMVLVTLRTPSGSGALPV FSAVDVMAAWRPSVRPVPVTLPDACAEAVRMGLAAVVIDLGGPAPVTLDVRPAAGDVGGGVGRRGPRPFGGGEGMWISSG EPGTSAAMRGAAGPAAAGADGHADELIVAADSGGGLLRPRPVPLGARGRRRIRAALAGLPPETEVWPAELAESIGQRWPA RPVLAVAVNGAAGTAAAAGAAAAGAGATAGAAGAAGRAGSRDAVDRGHLENPGDTENPDGTGDFGGAGDFGDTGAAGGAA PGGDDMITEIVRRLRLLIEDGPGGSAAGGGSAEAAVLVVDPTEVPAVRAHLGRGVRPPRRSLFRRRDGRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38349; Mature: 38218
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: PS01070 NUCLEASE_NON_SPEC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPDLLTPPGQGDHGRADSALLAALRSGDRAALTAALPGARVFVGVEARALATDALTGAD CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEECCHHHHHHHHHCCCC KKSDMVLVTLRTPSGSGALPVFSAVDVMAAWRPSVRPVPVTLPDACAEAVRMGLAAVVID CCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCEEEEEE LGGPAPVTLDVRPAAGDVGGGVGRRGPRPFGGGEGMWISSGEPGTSAAMRGAAGPAAAGA CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCCC DGHADELIVAADSGGGLLRPRPVPLGARGRRRIRAALAGLPPETEVWPAELAESIGQRWP CCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC ARPVLAVAVNGAAGTAAAAGAAAAGAGATAGAAGAAGRAGSRDAVDRGHLENPGDTENPD CCCEEEEEECCCCCCHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GTGDFGGAGDFGDTGAAGGAAPGGDDMITEIVRRLRLLIEDGPGGSAAGGGSAEAAVLVV CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEEEE DPTEVPAVRAHLGRGVRPPRRSLFRRRDGRA CCCCCHHHHHHHCCCCCCHHHHHHHHCCCCC >Mature Secondary Structure SPDLLTPPGQGDHGRADSALLAALRSGDRAALTAALPGARVFVGVEARALATDALTGAD CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEECCHHHHHHHHHCCCC KKSDMVLVTLRTPSGSGALPVFSAVDVMAAWRPSVRPVPVTLPDACAEAVRMGLAAVVID CCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCEEEEEE LGGPAPVTLDVRPAAGDVGGGVGRRGPRPFGGGEGMWISSGEPGTSAAMRGAAGPAAAGA CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCCC DGHADELIVAADSGGGLLRPRPVPLGARGRRRIRAALAGLPPETEVWPAELAESIGQRWP CCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC ARPVLAVAVNGAAGTAAAAGAAAAGAGATAGAAGAAGRAGSRDAVDRGHLENPGDTENPD CCCEEEEEECCCCCCHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GTGDFGGAGDFGDTGAAGGAAPGGDDMITEIVRRLRLLIEDGPGGSAAGGGSAEAAVLVV CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEEEE DPTEVPAVRAHLGRGVRPPRRSLFRRRDGRA CCCCCHHHHHHHCCCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA