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The map label for this gene is rpoZ [H]

Identifier: 158313550

GI number: 158313550

Start: 2048984

End: 2049268

Strand: Direct

Name: rpoZ [H]

Synonym: Franean1_1714

Alternate gene names: 158313550

Gene position: 2048984-2049268 (Clockwise)

Preceding gene: 158313549

Following gene: 158313551

Centisome position: 22.81

GC content: 67.02

Gene sequence:

>285_bases
GTGTCCGGTACTGTCGCCCAGCCCGAGGGCATCACGAACCCGCCGATCGACGAGCTGCTCGAGGCCACCGACTCGAAGTA
CAGCCTCGTCATCTACGCGGCGAAGCGGGCCCGCCAGATCAACGCCTACTACTCCCAGCTCGGCGAGGGCCTGCTGGAGT
ACGTCGGCCCGCTGGTGGAGACGACCAGCGCCCAGGAGAAGCCGCTGTCGATCGCGCTCCGCGAGATCAACTCCGGTCTG
CTCACGCACGAGACGATCACAGACCCGCTGCCGCCGATCTCCTGA

Upstream 100 bases:

>100_bases
TGTACCGGTTGCGGCTGTACTGTTGTCCGGGACAGGGCTCGGCCCAGGCCGCCCACGGCGCGCCTGGAGCCGCCCGACCG
CCCCACCCCGGAAGGACACC

Downstream 100 bases:

>100_bases
CCCACGCGGCCTCCGCGGCTCGCGTCCGTCTCGCCGGTCCTGCCCGCCTCGGTTGTTCCGCGTGACAGGCGGCGGGGCGG
GGATGCGCGGCGGTGGTTCG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MSGTVAQPEGITNPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVETTSAQEKPLSIALREINSGL
LTHETITDPLPPIS

Sequences:

>Translated_94_residues
MSGTVAQPEGITNPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVETTSAQEKPLSIALREINSGL
LTHETITDPLPPIS
>Mature_93_residues
SGTVAQPEGITNPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVETTSAQEKPLSIALREINSGLL
THETITDPLPPIS

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 10171; Mature: 10039

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGTVAQPEGITNPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVE
CCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTSAQEKPLSIALREINSGLLTHETITDPLPPIS
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SGTVAQPEGITNPPIDELLEATDSKYSLVIYAAKRARQINAYYSQLGEGLLEYVGPLVE
CCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTSAQEKPLSIALREINSGLLTHETITDPLPPIS
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA