BacMap

Definition	Frankia sp. EAN1pec chromosome, complete genome.
Accession	NC_009921
Length	8,982,042

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The map label for this gene is cbpA [H]

Identifier: 158313408

GI number: 158313408

Start: 1877239

End: 1878285

Strand: Direct

Name: cbpA [H]

Synonym: Franean1_1571

Alternate gene names: 158313408

Gene position: 1877239-1878285 (Clockwise)

Preceding gene: 158313407

Following gene: 158313409

Centisome position: 20.9

GC content: 77.27

Gene sequence:

>1047_bases
ATGAGCGCCGGGACGACGGGACGCGCGAGCCCGGACTTCTACGAGCTGCTCGGCGTGCCGCGTGACGCCGACACCGACGC
CATCCAGCGTGCGTACCGCAAGCTCGCCCGCAGGTACCACCCGGACATCAACTCCGACCCGTCCGCCGAGGAGCGGTTCA
AGGACCTCTCCGAGGCGTACGACGTGCTGTCCGACCCGGACACCCGTGCACGCTACGACCGGTTCGGCCGCGATTTCCGC
CGGGTGCCGGAGGGCGCCGAACGCTGGGCGGACGCCCCACGGGGCGGCTTCGGGCCAGGTGCCGGGCCGGGCGCCGGCGC
CGACGGGACCGCCGGGCGCGGCGGGGGCTTCGGCTTCGAGGGGTTCCAGGGCTTCGACTTCGAGGACCTGTTCGGCGGGG
TCCGCGGGTTCGCCCGCCGGCGCGGCCGGGTGGGCCCGGTGCCCGGCGCCGACCAGGAGGCGGAGATCGAGATCCTGCTC
GCCGAGGCCTACCGCGGCGCACGGCGGCGGATCACGCTGCCCGGGCCGCGCGGCCTCCGGGAGGTCGACGTGGCCGTCCC
GGCCGGCGTTCGTGACGGCCAGCGGCTGCGCCTCGCCGGGCAGGGTGGGCGCGGCCGGGACGGCGGAAGCCCCGGCGACC
TCTACCTCGTGGTGCGCCTGGCTCCCGACCCGCGGTTCCGGGTCGAGGGCCGCGACGTCCACACCGACCTGCCGCTCGCC
CCGTGGGAAGCAGTCCTGGGAACGGCGGCCGGGCTGGACACACCGGCCGGCGAGCGGATGACGGTCACCGTCCCGCCGGC
CACCTCCAGCGGCCGCCGGCTCCGCCTGCGCGGCCGGGGCCTGCCGGCGCCTGGCCGGGACGCGTCCCGGGAGGCCACGG
GTGGCAGCGCCGGCGCCGCTGGCGGTGGTGGCGGTCCCGGTGGCGCGGCCGGCGACCTGTACGCGCACGCGCGGATCATG
GTGCCGCCCAACCCCGCGGAACGGGAGACCGAGCTGTTCCGCGAGCTCGCCCGGGTCTCGTCCTTCAACCCCAGGGAGCG
GTCATGA

Upstream 100 bases:

>100_bases
CGGGCACCGTCGTCGAGGTCCTGCGCCCCGGCGTCGAGGCCGGCGGGCGGGTGCTGCGGCCGGCGTCGGTCGCGGTGAGC
GCCGGCCCGCGGACGGCGAC

Downstream 100 bases:

>100_bases
CCATGACGCTCGTCCGCACCCGCCCGCGGGACCGCGAGCTGGACCTGGAGTCCTTCTGCGCCGCCGCCCAGCTGCACCCC
GACCTCGTCCACAGGCTGGT

Product: heat shock protein DnaJ domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MSAGTTGRASPDFYELLGVPRDADTDAIQRAYRKLARRYHPDINSDPSAEERFKDLSEAYDVLSDPDTRARYDRFGRDFR
RVPEGAERWADAPRGGFGPGAGPGAGADGTAGRGGGFGFEGFQGFDFEDLFGGVRGFARRRGRVGPVPGADQEAEIEILL
AEAYRGARRRITLPGPRGLREVDVAVPAGVRDGQRLRLAGQGGRGRDGGSPGDLYLVVRLAPDPRFRVEGRDVHTDLPLA
PWEAVLGTAAGLDTPAGERMTVTVPPATSSGRRLRLRGRGLPAPGRDASREATGGSAGAAGGGGGPGGAAGDLYAHARIM
VPPNPAERETELFRELARVSSFNPRERS

Sequences:

>Translated_348_residues
MSAGTTGRASPDFYELLGVPRDADTDAIQRAYRKLARRYHPDINSDPSAEERFKDLSEAYDVLSDPDTRARYDRFGRDFR
RVPEGAERWADAPRGGFGPGAGPGAGADGTAGRGGGFGFEGFQGFDFEDLFGGVRGFARRRGRVGPVPGADQEAEIEILL
AEAYRGARRRITLPGPRGLREVDVAVPAGVRDGQRLRLAGQGGRGRDGGSPGDLYLVVRLAPDPRFRVEGRDVHTDLPLA
PWEAVLGTAAGLDTPAGERMTVTVPPATSSGRRLRLRGRGLPAPGRDASREATGGSAGAAGGGGGPGGAAGDLYAHARIM
VPPNPAERETELFRELARVSSFNPRERS
>Mature_347_residues
SAGTTGRASPDFYELLGVPRDADTDAIQRAYRKLARRYHPDINSDPSAEERFKDLSEAYDVLSDPDTRARYDRFGRDFRR
VPEGAERWADAPRGGFGPGAGPGAGADGTAGRGGGFGFEGFQGFDFEDLFGGVRGFARRRGRVGPVPGADQEAEIEILLA
EAYRGARRRITLPGPRGLREVDVAVPAGVRDGQRLRLAGQGGRGRDGGSPGDLYLVVRLAPDPRFRVEGRDVHTDLPLAP
WEAVLGTAAGLDTPAGERMTVTVPPATSSGRRLRLRGRGLPAPGRDASREATGGSAGAAGGGGGPGGAAGDLYAHARIMV
PPNPAERETELFRELARVSSFNPRERS

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI201862518, Length=342, Percent_Identity=28.0701754385965, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI201862587, Length=342, Percent_Identity=28.0701754385965, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI56549115, Length=332, Percent_Identity=28.0120481927711, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI6631085, Length=311, Percent_Identity=27.9742765273312, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI5453690, Length=308, Percent_Identity=27.5974025974026, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI205360838, Length=168, Percent_Identity=34.5238095238095, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI205360840, Length=168, Percent_Identity=34.5238095238095, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI39204547, Length=286, Percent_Identity=25.5244755244755, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI194328758, Length=290, Percent_Identity=26.8965517241379, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI9558755, Length=123, Percent_Identity=36.5853658536585, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI194328760, Length=290, Percent_Identity=26.8965517241379, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI27151736, Length=137, Percent_Identity=37.956204379562, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI7706495, Length=68, Percent_Identity=54.4117647058823, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI88501736, Length=137, Percent_Identity=37.956204379562, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI4504511, Length=293, Percent_Identity=26.962457337884, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI47777312, Length=67, Percent_Identity=55.2238805970149, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI194306642, Length=71, Percent_Identity=47.887323943662, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI194306640, Length=71, Percent_Identity=47.887323943662, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI22749377, Length=65, Percent_Identity=50.7692307692308, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI5031741, Length=68, Percent_Identity=50, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI56687498, Length=63, Percent_Identity=49.2063492063492, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI23503241, Length=72, Percent_Identity=52.7777777777778, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI72534740, Length=69, Percent_Identity=44.9275362318841, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI217035105, Length=72, Percent_Identity=45.8333333333333, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI68077168, Length=62, Percent_Identity=58.0645161290323, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI68077166, Length=62, Percent_Identity=58.0645161290323, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI17388799, Length=66, Percent_Identity=50, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4885495, Length=66, Percent_Identity=50, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI29126218, Length=76, Percent_Identity=42.1052631578947, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI21361912, Length=62, Percent_Identity=48.3870967741936, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI45504382, Length=76, Percent_Identity=40.7894736842105, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI21553335, Length=69, Percent_Identity=43.4782608695652, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787235, Length=347, Percent_Identity=35.4466858789625, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1786197, Length=332, Percent_Identity=29.5180722891566, Blast_Score=96, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI212645553, Length=293, Percent_Identity=28.6689419795222, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17534355, Length=359, Percent_Identity=26.7409470752089, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17553096, Length=69, Percent_Identity=44.9275362318841, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17553098, Length=69, Percent_Identity=44.9275362318841, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI115532378, Length=66, Percent_Identity=51.5151515151515, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17554644, Length=79, Percent_Identity=50.6329113924051, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI115532476, Length=90, Percent_Identity=42.2222222222222, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI86562985, Length=62, Percent_Identity=43.5483870967742, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17538236, Length=69, Percent_Identity=47.8260869565217, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17554874, Length=74, Percent_Identity=50, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17568643, Length=67, Percent_Identity=47.7611940298507, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17507263, Length=62, Percent_Identity=46.7741935483871, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324265, Length=66, Percent_Identity=53.030303030303, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322194, Length=76, Percent_Identity=48.6842105263158, Blast_Score=77, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6323813, Length=67, Percent_Identity=52.2388059701493, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323870, Length=70, Percent_Identity=44.2857142857143, Blast_Score=73, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6323119, Length=70, Percent_Identity=44.2857142857143, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6320888, Length=68, Percent_Identity=42.6470588235294, Blast_Score=63, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24658562, Length=313, Percent_Identity=29.073482428115, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24658555, Length=313, Percent_Identity=29.073482428115, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI19920464, Length=286, Percent_Identity=30.0699300699301, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI85726398, Length=324, Percent_Identity=25.3086419753086, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI18858081, Length=318, Percent_Identity=27.9874213836478, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI20129487, Length=81, Percent_Identity=46.9135802469136, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24584014, Length=81, Percent_Identity=46.9135802469136, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45552813, Length=69, Percent_Identity=46.3768115942029, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI45549272, Length=69, Percent_Identity=46.3768115942029, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI45552811, Length=67, Percent_Identity=47.7611940298507, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24654066, Length=69, Percent_Identity=49.2753623188406, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24654070, Length=69, Percent_Identity=49.2753623188406, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24654068, Length=69, Percent_Identity=49.2753623188406, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24654072, Length=69, Percent_Identity=49.2753623188406, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24668492, Length=119, Percent_Identity=33.6134453781513, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646562, Length=61, Percent_Identity=52.4590163934426, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24646560, Length=61, Percent_Identity=52.4590163934426, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24646558, Length=61, Percent_Identity=52.4590163934426, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24646556, Length=61, Percent_Identity=52.4590163934426, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21357547, Length=61, Percent_Identity=52.4590163934426, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17737735, Length=65, Percent_Identity=46.1538461538462, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574723, Length=65, Percent_Identity=46.1538461538462, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24668523, Length=65, Percent_Identity=46.1538461538462, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24584630, Length=69, Percent_Identity=46.3768115942029, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17648033, Length=69, Percent_Identity=46.3768115942029, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=50, Blast_Score=65, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 36927; Mature: 36796

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGTTGRASPDFYELLGVPRDADTDAIQRAYRKLARRYHPDINSDPSAEERFKDLSEAY
CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
DVLSDPDTRARYDRFGRDFRRVPEGAERWADAPRGGFGPGAGPGAGADGTAGRGGGFGFE
HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GFQGFDFEDLFGGVRGFARRRGRVGPVPGADQEAEIEILLAEAYRGARRRITLPGPRGLR
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHCCCCCEEECCCCCCCE
EVDVAVPAGVRDGQRLRLAGQGGRGRDGGSPGDLYLVVRLAPDPRFRVEGRDVHTDLPLA
EEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCC
PWEAVLGTAAGLDTPAGERMTVTVPPATSSGRRLRLRGRGLPAPGRDASREATGGSAGAA
HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
GGGGGPGGAAGDLYAHARIMVPPNPAERETELFRELARVSSFNPRERS
CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SAGTTGRASPDFYELLGVPRDADTDAIQRAYRKLARRYHPDINSDPSAEERFKDLSEAY
CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
DVLSDPDTRARYDRFGRDFRRVPEGAERWADAPRGGFGPGAGPGAGADGTAGRGGGFGFE
HHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GFQGFDFEDLFGGVRGFARRRGRVGPVPGADQEAEIEILLAEAYRGARRRITLPGPRGLR
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHCCCCCEEECCCCCCCE
EVDVAVPAGVRDGQRLRLAGQGGRGRDGGSPGDLYLVVRLAPDPRFRVEGRDVHTDLPLA
EEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCC
PWEAVLGTAAGLDTPAGERMTVTVPPATSSGRRLRLRGRGLPAPGRDASREATGGSAGAA
HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
GGGGGPGGAAGDLYAHARIMVPPNPAERETELFRELARVSSFNPRERS
CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA