| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yehM [H]
Identifier: 158313390
GI number: 158313390
Start: 1858385
End: 1860865
Strand: Direct
Name: yehM [H]
Synonym: Franean1_1553
Alternate gene names: 158313390
Gene position: 1858385-1860865 (Clockwise)
Preceding gene: 158313389
Following gene: 158313391
Centisome position: 20.69
GC content: 77.19
Gene sequence:
>2481_bases ATGAGCGTCACCGTCCTGGGCATCCGCCACCACGGGCCGGGCTCCGCACGGGCGGTCGAGGCGGCGCTCGCCGAGCTCGA CCCGGACCTCGTCCTCGTCGAGGGCCCGGCGGAGGGCGACGCCGCCCTCGCGCACACCGGCTCGCTCACCCCGCCGGTCG CGCTGACGGTCTACGCCCGCGACGAACCGCGCGACGCCGCCTTCTGGCCGTTCGCCGAGTTCTCCCCCGAGTGGCGGGCG CTGCTGCACGGCGCCGCCACAGGCGTCCCGGTGCGTTTCGTCGACCTGCCCTTCGGGCTCTCCCTGGCGCTGCGGCGCCA GGAGCAGGCCGAGGCAGCGGCCAGGGCCGTCGACGCCGATGCTGAGGCCGGCGGCCCGGACGGCGCCGGTTCGCGCAGCG CCAACCCGCCCGGTGCCAGCTCCCCCGGTGATGCCGCTGGCGGTGACGGCGCTGGCGGTGACGGCGCGGGCGGCGAGGGC GGCGAGGGCGAGCCCGCGCACCTGGTCGAGGACGACCCGCTCGGATGGCTGGCACGGGCAGCCGGGCACGACGACCCGGA GCGATTCTGGGAGGACCTCGTCGAACACCGCCGGCTCGCCCGGGCCGGTTCGGGTGAGCCGGGCCGGGACGGCGCCCTCG AGCTGTTCGCCGCGGTTGCCAACGCGATGACCGAGCTGCGCGACGAGGCCGGCACGGGCGACCGGGTGTCCCCCACGCGG GTGGAGCACCGGCGGCGGGAGGAGATGCGCGAGGCGCACATGCGCCTGGAGATCCGCCGGGCCGGCTCGGGGGCGGACGC GGCCGCTCGGATCGCCGTCGTCTGCGGGGCCTGGCACGTGCCGGCGCTGACCGGGGGGGCGGGGCGGACGTCGGCCACCG CCGACCAGCGCACGCTGCGCGGCGTGCGAGCCGTGCGCACCGACACGACGTGGGTTCCGTGGACGCACGCGCGGCTCGCC GCGGAGTCCGGGTACGGCGCCGGGGTCGCGTCACCCGGTTGGTACCACCATCTGTGGACCGCGCGTAACCAGGTCACGAC CCGCTGGGTGACCCGGGTGGCGGGGCTGCTGCGCGCCGCCGACCTGCCCGCGTCCTCCGCCTCGGTGATCGAGACCGTCC GTCTCGCCGAGGCGCTCGCCGCCGTGCGCGAGCGGGCCGTCCCCGGGCTGACCGAGCTGAACGACGCCGTGCTCGCCGGT CTGTGCGGGGGCGACCCGGTTCCGCTGGCGGTGGTGCGCGAGCAGCTCGTCGTCGGGCGGGTGCTCGGCGCCGTCGGCGA GGACGTTCCGACCGTGCCGCTCGCCGCCGACCTCGCGCGCCTGCAGCGCCGGCTGCGGCTGCGGCCCGGGGCCGACGACC AGAAGATCCGGCTGGACCTGCGCAAGGACGTCGACCGGGAGCGCGGCCAGCTGCTGCGCCGGCTGCGCCTGCTCGACGTG CCGTGGGGGACGCCCGCAGCGACGTCGGGCACCGGGACCTTCGCCGAGGCGTGGACGCTGCGCTGGGAGCCGGAGTTCTC CGTCGCGGTGGTCGCCGCCGCCCGGTACGGCTCGACGGTCGCCGACGCGGCCACCGCGGTCATCACCGAACGGACGGAGG CCGCCGCCGACCTGCCGGCCGTCACCGCCCTGCTCGAGGCCGCGGTGCTCGCCGGGCTGCCCGCGGCGATGGCGGTCGTC GCGGCCGGGCTGGAACGCCGCGCCGCCGGCACCGGCGACGTCGCCCACCTGATGGCGGCGCTCGCCCCGCTGGCCCGCAT CCACCGGTACGGCGACGTGCGCGCGACCGACACGACGGGCGTCGCCGCCCTCGCCGAGAGCCTCATGGTGCGGATCTGCG CGGGGCTCCCGCCCGCCTGTGTGAGTCTCGACGACGACGCGGCGGACGCGATGGCCGCCGCGATCGACAGCGCCGACGGG GCGTTCCGACTGATCGCCGACCCCGAGCACGTCGAACGCTGGCACGTCGCCGTCCGCGCCGCCGCCGACATCCACGGTGG CAACAGCCTGGTCAACGGCAGGTGCACGCGGATCCTCTCGGACGCGGGTGACATCGACCAGGCAGAGGTGGCTCTCCGCC TTGACCGGGCGCTGTCCGCGGCGGGCGTCGCGCCGGCCGACGCCGCCCGCTGGCTGGAGGGCTTCCTCGGCTCCACCGGA TCGGTGCTGGCCCGGGACCCGCGGATGCTCGGGCTCGTCGACGCCTGGCTGGCCTCGCTCACAGCCGACGCGTTCACCGT CGTCCTCGCGCCGTTGCGGCGGGTGTTCGCGGCCTTCACGGCACCGGAGCGCCGCATGATCGCCGAACGGGCCGGGTCGG GGCTGCCGCGGCCGGCCGGTGGCGGCACCGGCCCGACGACATCCACGGGCGGTCCGGCGGCCTGGGACGCCGACCGGGTC GCGCTCGTCCTGCCTGTCGTCGCGTCGCTCCTCACGATCCCCGGCCTGGAAAGGACGGCCACACATGACCGAGATGCGTA G
Upstream 100 bases:
>100_bases TGGTCTGGCGGGAGTACCTCGAGGGCGTCGTGCGGGACCGCGACGGTTGGAAGGACCTGTACCAGGCCTGCTGGGATCTC GACACGGAGGCGCGCGGCAG
Downstream 100 bases:
>100_bases CGCGCAGGCTCTGTCCTTCAGGGCGGGGTTAGCGCATCAACGACAGCGTGACAGGCGTGCCCGCTATGCTGTCACCTGTG GGGTCGAAGGTGGTGAAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 826; Mature: 825
Protein sequence:
>826_residues MSVTVLGIRHHGPGSARAVEAALAELDPDLVLVEGPAEGDAALAHTGSLTPPVALTVYARDEPRDAAFWPFAEFSPEWRA LLHGAATGVPVRFVDLPFGLSLALRRQEQAEAAARAVDADAEAGGPDGAGSRSANPPGASSPGDAAGGDGAGGDGAGGEG GEGEPAHLVEDDPLGWLARAAGHDDPERFWEDLVEHRRLARAGSGEPGRDGALELFAAVANAMTELRDEAGTGDRVSPTR VEHRRREEMREAHMRLEIRRAGSGADAAARIAVVCGAWHVPALTGGAGRTSATADQRTLRGVRAVRTDTTWVPWTHARLA AESGYGAGVASPGWYHHLWTARNQVTTRWVTRVAGLLRAADLPASSASVIETVRLAEALAAVRERAVPGLTELNDAVLAG LCGGDPVPLAVVREQLVVGRVLGAVGEDVPTVPLAADLARLQRRLRLRPGADDQKIRLDLRKDVDRERGQLLRRLRLLDV PWGTPAATSGTGTFAEAWTLRWEPEFSVAVVAAARYGSTVADAATAVITERTEAAADLPAVTALLEAAVLAGLPAAMAVV AAGLERRAAGTGDVAHLMAALAPLARIHRYGDVRATDTTGVAALAESLMVRICAGLPPACVSLDDDAADAMAAAIDSADG AFRLIADPEHVERWHVAVRAAADIHGGNSLVNGRCTRILSDAGDIDQAEVALRLDRALSAAGVAPADAARWLEGFLGSTG SVLARDPRMLGLVDAWLASLTADAFTVVLAPLRRVFAAFTAPERRMIAERAGSGLPRPAGGGTGPTTSTGGPAAWDADRV ALVLPVVASLLTIPGLERTATHDRDA
Sequences:
>Translated_826_residues MSVTVLGIRHHGPGSARAVEAALAELDPDLVLVEGPAEGDAALAHTGSLTPPVALTVYARDEPRDAAFWPFAEFSPEWRA LLHGAATGVPVRFVDLPFGLSLALRRQEQAEAAARAVDADAEAGGPDGAGSRSANPPGASSPGDAAGGDGAGGDGAGGEG GEGEPAHLVEDDPLGWLARAAGHDDPERFWEDLVEHRRLARAGSGEPGRDGALELFAAVANAMTELRDEAGTGDRVSPTR VEHRRREEMREAHMRLEIRRAGSGADAAARIAVVCGAWHVPALTGGAGRTSATADQRTLRGVRAVRTDTTWVPWTHARLA AESGYGAGVASPGWYHHLWTARNQVTTRWVTRVAGLLRAADLPASSASVIETVRLAEALAAVRERAVPGLTELNDAVLAG LCGGDPVPLAVVREQLVVGRVLGAVGEDVPTVPLAADLARLQRRLRLRPGADDQKIRLDLRKDVDRERGQLLRRLRLLDV PWGTPAATSGTGTFAEAWTLRWEPEFSVAVVAAARYGSTVADAATAVITERTEAAADLPAVTALLEAAVLAGLPAAMAVV AAGLERRAAGTGDVAHLMAALAPLARIHRYGDVRATDTTGVAALAESLMVRICAGLPPACVSLDDDAADAMAAAIDSADG AFRLIADPEHVERWHVAVRAAADIHGGNSLVNGRCTRILSDAGDIDQAEVALRLDRALSAAGVAPADAARWLEGFLGSTG SVLARDPRMLGLVDAWLASLTADAFTVVLAPLRRVFAAFTAPERRMIAERAGSGLPRPAGGGTGPTTSTGGPAAWDADRV ALVLPVVASLLTIPGLERTATHDRDA >Mature_825_residues SVTVLGIRHHGPGSARAVEAALAELDPDLVLVEGPAEGDAALAHTGSLTPPVALTVYARDEPRDAAFWPFAEFSPEWRAL LHGAATGVPVRFVDLPFGLSLALRRQEQAEAAARAVDADAEAGGPDGAGSRSANPPGASSPGDAAGGDGAGGDGAGGEGG EGEPAHLVEDDPLGWLARAAGHDDPERFWEDLVEHRRLARAGSGEPGRDGALELFAAVANAMTELRDEAGTGDRVSPTRV EHRRREEMREAHMRLEIRRAGSGADAAARIAVVCGAWHVPALTGGAGRTSATADQRTLRGVRAVRTDTTWVPWTHARLAA ESGYGAGVASPGWYHHLWTARNQVTTRWVTRVAGLLRAADLPASSASVIETVRLAEALAAVRERAVPGLTELNDAVLAGL CGGDPVPLAVVREQLVVGRVLGAVGEDVPTVPLAADLARLQRRLRLRPGADDQKIRLDLRKDVDRERGQLLRRLRLLDVP WGTPAATSGTGTFAEAWTLRWEPEFSVAVVAAARYGSTVADAATAVITERTEAAADLPAVTALLEAAVLAGLPAAMAVVA AGLERRAAGTGDVAHLMAALAPLARIHRYGDVRATDTTGVAALAESLMVRICAGLPPACVSLDDDAADAMAAAIDSADGA FRLIADPEHVERWHVAVRAAADIHGGNSLVNGRCTRILSDAGDIDQAEVALRLDRALSAAGVAPADAARWLEGFLGSTGS VLARDPRMLGLVDAWLASLTADAFTVVLAPLRRVFAAFTAPERRMIAERAGSGLPRPAGGGTGPTTSTGGPAAWDADRVA LVLPVVASLLTIPGLERTATHDRDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788439, Length=656, Percent_Identity=23.4756097560976, Blast_Score=74, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85833; Mature: 85702
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVTVLGIRHHGPGSARAVEAALAELDPDLVLVEGPAEGDAALAHTGSLTPPVALTVYAR CCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCEEEEEEEC DEPRDAAFWPFAEFSPEWRALLHGAATGVPVRFVDLPFGLSLALRRQEQAEAAARAVDAD CCCCCCCCCCCHHCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCC AEAGGPDGAGSRSANPPGASSPGDAAGGDGAGGDGAGGEGGEGEPAHLVEDDPLGWLARA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH AGHDDPERFWEDLVEHRRLARAGSGEPGRDGALELFAAVANAMTELRDEAGTGDRVSPTR CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH VEHRRREEMREAHMRLEIRRAGSGADAAARIAVVCGAWHVPALTGGAGRTSATADQRTLR HHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH GVRAVRTDTTWVPWTHARLAAESGYGAGVASPGWYHHLWTARNQVTTRWVTRVAGLLRAA HHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DLPASSASVIETVRLAEALAAVRERAVPGLTELNDAVLAGLCGGDPVPLAVVREQLVVGR CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH VLGAVGEDVPTVPLAADLARLQRRLRLRPGADDQKIRLDLRKDVDRERGQLLRRLRLLDV HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHCC PWGTPAATSGTGTFAEAWTLRWEPEFSVAVVAAARYGSTVADAATAVITERTEAAADLPA CCCCCCCCCCCCCCHHEEEEEECCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHH VTALLEAAVLAGLPAAMAVVAAGLERRAAGTGDVAHLMAALAPLARIHRYGDVRATDTTG HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH VAALAESLMVRICAGLPPACVSLDDDAADAMAAAIDSADGAFRLIADPEHVERWHVAVRA HHHHHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH AADIHGGNSLVNGRCTRILSDAGDIDQAEVALRLDRALSAAGVAPADAARWLEGFLGSTG HHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC SVLARDPRMLGLVDAWLASLTADAFTVVLAPLRRVFAAFTAPERRMIAERAGSGLPRPAG CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC GGTGPTTSTGGPAAWDADRVALVLPVVASLLTIPGLERTATHDRDA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCC >Mature Secondary Structure SVTVLGIRHHGPGSARAVEAALAELDPDLVLVEGPAEGDAALAHTGSLTPPVALTVYAR CEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCEEEEEEEC DEPRDAAFWPFAEFSPEWRALLHGAATGVPVRFVDLPFGLSLALRRQEQAEAAARAVDAD CCCCCCCCCCCHHCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCC AEAGGPDGAGSRSANPPGASSPGDAAGGDGAGGDGAGGEGGEGEPAHLVEDDPLGWLARA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH AGHDDPERFWEDLVEHRRLARAGSGEPGRDGALELFAAVANAMTELRDEAGTGDRVSPTR CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH VEHRRREEMREAHMRLEIRRAGSGADAAARIAVVCGAWHVPALTGGAGRTSATADQRTLR HHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH GVRAVRTDTTWVPWTHARLAAESGYGAGVASPGWYHHLWTARNQVTTRWVTRVAGLLRAA HHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH DLPASSASVIETVRLAEALAAVRERAVPGLTELNDAVLAGLCGGDPVPLAVVREQLVVGR CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH VLGAVGEDVPTVPLAADLARLQRRLRLRPGADDQKIRLDLRKDVDRERGQLLRRLRLLDV HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHCC PWGTPAATSGTGTFAEAWTLRWEPEFSVAVVAAARYGSTVADAATAVITERTEAAADLPA CCCCCCCCCCCCCCHHEEEEEECCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHH VTALLEAAVLAGLPAAMAVVAAGLERRAAGTGDVAHLMAALAPLARIHRYGDVRATDTTG HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH VAALAESLMVRICAGLPPACVSLDDDAADAMAAAIDSADGAFRLIADPEHVERWHVAVRA HHHHHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH AADIHGGNSLVNGRCTRILSDAGDIDQAEVALRLDRALSAAGVAPADAARWLEGFLGSTG HHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC SVLARDPRMLGLVDAWLASLTADAFTVVLAPLRRVFAAFTAPERRMIAERAGSGLPRPAG CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC GGTGPTTSTGGPAAWDADRVALVLPVVASLLTIPGLERTATHDRDA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]