| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313299
Identifier: 158313299
GI number: 158313299
Start: 1757384
End: 1759003
Strand: Direct
Name: 158313299
Synonym: Franean1_1461
Alternate gene names: NA
Gene position: 1757384-1759003 (Clockwise)
Preceding gene: 158313298
Following gene: 158313300
Centisome position: 19.57
GC content: 69.38
Gene sequence:
>1620_bases GTGCGGACGGCCTCGGGTGCGACGGCGGTGCAGATCGCCGAGTACGTCGGTGGCCGTCGTCAGCGGATCGTGGCGCATGT GGGGTCCGCCCATACCGAAGCGGAGCTCGGGATCCTGCTGGCGCGGGCCGAGGAGATGCTCGCCGACAGCCAGCAGGCGG CGCTCGACCTCGGGATCGAGCCGGCCGTGCGCACGGCCAGGCTGCTCGGGTCGCCGCGTGAGCCGGCGCTGTTCGACCCC GAGCCCGCCGCCGGACCTGCCGCGGTGGTCGGGCCCGCGAAGGTGCTCACGACCGCGTCGGTGCTGCTGTTCGACGCCCT GGCCTCGGTGTTCACCGATCTCGGGTTCGACGCGTTGGGCGACCCGGTGTTCCGGGACCTGGTGATCGCCCGGGTCGTGG AGCCGACGTCGCTGCTCGACACCGGCCGGGTGCTCACCGACTTGGGACGCAAGCCCGCGGCGTACGCGACGATGAAACGC ACCCTGACCCGCTGCGCCTCCGGCGGCTACCGCGACCAGGTCGCCGACCTGTGCTTTGCCCACGCCCTGGCCCACGGCGA CGTCTCCCTATGCCTCTATGACGTGACCACGCTGTACTTCGAGGCCGAGAAGGAAGACGACCTACGCAAGGTCGGCTACT CCAAGGAACGTCGCGTCGACCCGCAGATCGTCGTCGGGCTGCTTGTCGACCGTTACGGCTTCCCGCTGGAGATCGGCTGC TTCGAGGGCAACCGGGCCGAGACCGCGACGATCCTGCCGATCATCCGCCAGTTCAAAGACCGTCACCAGCTCGAGAACCT GGTCGTGGTCGCCGACGCCGGCATGCTGTCCGCGACCAACCTGCGTGAACTCGACGACGCCGGGTTCGGGTTCATCGTCG GCTCACGGGTCACCAAGGCGCCGATCGACCTGGCCTCCCACTTCCGCTGGCACGGCGACGCCTTCACCGACGGCCAGGTC ATCGACACGGTCACGCCCCGCACAGGGCGCAACCGTGACAACGACACCGACGTGAAGACCGAGCCTGTCTGGACCCGTGA CCAGCACCCCAGGTCGTGGCGAGCCGTCTGGGCCTACTCGGCCAAGCGCGCCGCCCGCGACAACAAGACGCTGACCGCGC AGGAGAACCGCGCCCGCGCTGTCGTCGACGGCGAGAAGACTACCCGCACGCCGAGATTCGTCACCGTCAAGGGCGACGCC GCCACCCTCGACGAGGCCAGCCTCACCCGGGCCCGCCGGCTCGTCGGGCTGAAGGGCTACGTCACCAACCTGCCGGTCAC CGTCCTGACCGCCGACCAGGTCATCTCGAACTACCACGACCTTTGGCACGTCGAGCAGTCGTTCCGGATGTCGAAGACCG ATCTCGCTGCCCGGCCCATGTTCGTCCGCACGAAGGAGGCGATCGACGCCCACCTGACGATCGTGTTCACCGCGCTCGCC GTCGCCCGCACCGTTCAGAACCGCACCGGCCTCGCGGTCCGCAACGTGATCCGACAGCTCCGCCCGCTGCGCTCCGCGAC CATCGCGATCAACGGCGCCATCCAGACCTTCCCGCCCGCGATCAACCCGGACAAACAAGCGGTACTCGACACCCTCCACG CGGCGGCCGTCACGCACTAA
Upstream 100 bases:
>100_bases TCGGGGCTGGGGGGCGCTGACCTGGGACGATGGCCGGCTGGTGCGCCGTTTTCACGCACTAACGGTGTTCTAGTCTTCGG CCGTGGTGTTCGTTCGGAGG
Downstream 100 bases:
>100_bases GCCGATTGAGCCAACTCAGGTGGCCGAGGACGCGCGGCACTACAACGGACGACGACTCCACCGCGGGCCGCGTCCGGCTG TGCTCGGTCCACGCCTTGAT
Product: transposase IS4 family protein
Products: NA
Alternate protein names: Transposase; Transposase IS4 Family; Transposase Is4 Family Protein; Transposase Undefined; Transposase For Insertion Sequence Element; ISMbov3 Transposase; ISMHp1 Transposase; Transposase Family Protein; ISMsm6 Transposase; IS4 Family Transposase; TnpB Family Transposase
Number of amino acids: Translated: 539; Mature: 539
Protein sequence:
>539_residues MRTASGATAVQIAEYVGGRRQRIVAHVGSAHTEAELGILLARAEEMLADSQQAALDLGIEPAVRTARLLGSPREPALFDP EPAAGPAAVVGPAKVLTTASVLLFDALASVFTDLGFDALGDPVFRDLVIARVVEPTSLLDTGRVLTDLGRKPAAYATMKR TLTRCASGGYRDQVADLCFAHALAHGDVSLCLYDVTTLYFEAEKEDDLRKVGYSKERRVDPQIVVGLLVDRYGFPLEIGC FEGNRAETATILPIIRQFKDRHQLENLVVVADAGMLSATNLRELDDAGFGFIVGSRVTKAPIDLASHFRWHGDAFTDGQV IDTVTPRTGRNRDNDTDVKTEPVWTRDQHPRSWRAVWAYSAKRAARDNKTLTAQENRARAVVDGEKTTRTPRFVTVKGDA ATLDEASLTRARRLVGLKGYVTNLPVTVLTADQVISNYHDLWHVEQSFRMSKTDLAARPMFVRTKEAIDAHLTIVFTALA VARTVQNRTGLAVRNVIRQLRPLRSATIAINGAIQTFPPAINPDKQAVLDTLHAAAVTH
Sequences:
>Translated_539_residues MRTASGATAVQIAEYVGGRRQRIVAHVGSAHTEAELGILLARAEEMLADSQQAALDLGIEPAVRTARLLGSPREPALFDP EPAAGPAAVVGPAKVLTTASVLLFDALASVFTDLGFDALGDPVFRDLVIARVVEPTSLLDTGRVLTDLGRKPAAYATMKR TLTRCASGGYRDQVADLCFAHALAHGDVSLCLYDVTTLYFEAEKEDDLRKVGYSKERRVDPQIVVGLLVDRYGFPLEIGC FEGNRAETATILPIIRQFKDRHQLENLVVVADAGMLSATNLRELDDAGFGFIVGSRVTKAPIDLASHFRWHGDAFTDGQV IDTVTPRTGRNRDNDTDVKTEPVWTRDQHPRSWRAVWAYSAKRAARDNKTLTAQENRARAVVDGEKTTRTPRFVTVKGDA ATLDEASLTRARRLVGLKGYVTNLPVTVLTADQVISNYHDLWHVEQSFRMSKTDLAARPMFVRTKEAIDAHLTIVFTALA VARTVQNRTGLAVRNVIRQLRPLRSATIAINGAIQTFPPAINPDKQAVLDTLHAAAVTH >Mature_539_residues MRTASGATAVQIAEYVGGRRQRIVAHVGSAHTEAELGILLARAEEMLADSQQAALDLGIEPAVRTARLLGSPREPALFDP EPAAGPAAVVGPAKVLTTASVLLFDALASVFTDLGFDALGDPVFRDLVIARVVEPTSLLDTGRVLTDLGRKPAAYATMKR TLTRCASGGYRDQVADLCFAHALAHGDVSLCLYDVTTLYFEAEKEDDLRKVGYSKERRVDPQIVVGLLVDRYGFPLEIGC FEGNRAETATILPIIRQFKDRHQLENLVVVADAGMLSATNLRELDDAGFGFIVGSRVTKAPIDLASHFRWHGDAFTDGQV IDTVTPRTGRNRDNDTDVKTEPVWTRDQHPRSWRAVWAYSAKRAARDNKTLTAQENRARAVVDGEKTTRTPRFVTVKGDA ATLDEASLTRARRLVGLKGYVTNLPVTVLTADQVISNYHDLWHVEQSFRMSKTDLAARPMFVRTKEAIDAHLTIVFTALA VARTVQNRTGLAVRNVIRQLRPLRSATIAINGAIQTFPPAINPDKQAVLDTLHAAAVTH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58868; Mature: 58868
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTASGATAVQIAEYVGGRRQRIVAHVGSAHTEAELGILLARAEEMLADSQQAALDLGIE CCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCC PAVRTARLLGSPREPALFDPEPAAGPAAVVGPAKVLTTASVLLFDALASVFTDLGFDALG HHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHCC DPVFRDLVIARVVEPTSLLDTGRVLTDLGRKPAAYATMKRTLTRCASGGYRDQVADLCFA CHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH HALAHGDVSLCLYDVTTLYFEAEKEDDLRKVGYSKERRVDPQIVVGLLVDRYGFPLEIGC HHHHCCCHHHHHEEHHHHEEECCCCHHHHHCCCCHHHCCCHHHHHHHHHHCCCCCEEEEE FEGNRAETATILPIIRQFKDRHQLENLVVVADAGMLSATNLRELDDAGFGFIVGSRVTKA CCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHCCCCCEEECCCCCCC PIDLASHFRWHGDAFTDGQVIDTVTPRTGRNRDNDTDVKTEPVWTRDQHPRSWRAVWAYS HHHHHHHCEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH AKRAARDNKTLTAQENRARAVVDGEKTTRTPRFVTVKGDAATLDEASLTRARRLVGLKGY HHHHHCCCCCEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCH VTNLPVTVLTADQVISNYHDLWHVEQSFRMSKTDLAARPMFVRTKEAIDAHLTIVFTALA HHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEHHHHHHHHHHHHHHHH VARTVQNRTGLAVRNVIRQLRPLRSATIAINGAIQTFPPAINPDKQAVLDTLHAAAVTH HHHHHHCCCCHHHHHHHHHHHHHHHEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MRTASGATAVQIAEYVGGRRQRIVAHVGSAHTEAELGILLARAEEMLADSQQAALDLGIE CCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCC PAVRTARLLGSPREPALFDPEPAAGPAAVVGPAKVLTTASVLLFDALASVFTDLGFDALG HHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHCC DPVFRDLVIARVVEPTSLLDTGRVLTDLGRKPAAYATMKRTLTRCASGGYRDQVADLCFA CHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH HALAHGDVSLCLYDVTTLYFEAEKEDDLRKVGYSKERRVDPQIVVGLLVDRYGFPLEIGC HHHHCCCHHHHHEEHHHHEEECCCCHHHHHCCCCHHHCCCHHHHHHHHHHCCCCCEEEEE FEGNRAETATILPIIRQFKDRHQLENLVVVADAGMLSATNLRELDDAGFGFIVGSRVTKA CCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHCCCCCEEECCCCCCC PIDLASHFRWHGDAFTDGQVIDTVTPRTGRNRDNDTDVKTEPVWTRDQHPRSWRAVWAYS HHHHHHHCEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH AKRAARDNKTLTAQENRARAVVDGEKTTRTPRFVTVKGDAATLDEASLTRARRLVGLKGY HHHHHCCCCCEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCH VTNLPVTVLTADQVISNYHDLWHVEQSFRMSKTDLAARPMFVRTKEAIDAHLTIVFTALA HHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEHHHHHHHHHHHHHHHH VARTVQNRTGLAVRNVIRQLRPLRSATIAINGAIQTFPPAINPDKQAVLDTLHAAAVTH HHHHHHCCCCHHHHHHHHHHHHHHHEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA