| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158313216
Identifier: 158313216
GI number: 158313216
Start: 1654784
End: 1655233
Strand: Direct
Name: 158313216
Synonym: Franean1_1371
Alternate gene names: NA
Gene position: 1654784-1655233 (Clockwise)
Preceding gene: 158313215
Following gene: 158313225
Centisome position: 18.42
GC content: 62.0
Gene sequence:
>450_bases ATGACACCAAAATCATCGCAGCCGTGGGTCGCCACGCTCGTGAGAACTGTCTTCGACCAGGCCGACGCCAATGAGGTCGG CGGGCAGTTCGACCGGGTCGTCGAAGCCCTCTCCGAGAAACTCCCGAAGGCCGCCGACCATCTCTCCGGCGCAAAAGCCG ACCTACTCGCGTTCACGACCTACCCGCGGGAGGTCTGGCGGCAGATCTGGTCGTCGAACCCGCAGGAACGACTGAACAAG GAAATCCGCCGCCGTACCGACGTCGTCGGTATCTTCCCCGACCGTGACGCCATCATACGTCTCGTCGGCGCGGTCCTCGC GGAACAACACGACGAGTGGATCGAGACCCACCGCTACTTCGGCCTCGAAATCCTCGCGAAAGTCGACGCCACGAACAAGA AATCCGACACACCTGAGATCGGCGTGACACCCGAAGCTCTGACCGCATAA
Upstream 100 bases:
>100_bases AGAACATCCCCCATGATCGCCATAGCACGACATCGAACCAGACAGGTCGAACCACCAGGTTGTTCCTGCACAGGCCCATT ACCTTCGGGACTTGCTCACG
Downstream 100 bases:
>100_bases CCTTCAACCAGGATCACGCGGCATCACGCTCCGTACACCACCACCCTGGGCATGACCAAGCGCCGGCTCGGGTGCCTACT TCACTGACCTTGCCCGGACG
Product: transposase, mutator type
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MTPKSSQPWVATLVRTVFDQADANEVGGQFDRVVEALSEKLPKAADHLSGAKADLLAFTTYPREVWRQIWSSNPQERLNK EIRRRTDVVGIFPDRDAIIRLVGAVLAEQHDEWIETHRYFGLEILAKVDATNKKSDTPEIGVTPEALTA
Sequences:
>Translated_149_residues MTPKSSQPWVATLVRTVFDQADANEVGGQFDRVVEALSEKLPKAADHLSGAKADLLAFTTYPREVWRQIWSSNPQERLNK EIRRRTDVVGIFPDRDAIIRLVGAVLAEQHDEWIETHRYFGLEILAKVDATNKKSDTPEIGVTPEALTA >Mature_148_residues TPKSSQPWVATLVRTVFDQADANEVGGQFDRVVEALSEKLPKAADHLSGAKADLLAFTTYPREVWRQIWSSNPQERLNKE IRRRTDVVGIFPDRDAIIRLVGAVLAEQHDEWIETHRYFGLEILAKVDATNKKSDTPEIGVTPEALTA
Specific function: Required for the transposition of the insertion element [H]
COG id: COG3328
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 16739; Mature: 16608
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPKSSQPWVATLVRTVFDQADANEVGGQFDRVVEALSEKLPKAADHLSGAKADLLAFTT CCCCCCCCHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHH YPREVWRQIWSSNPQERLNKEIRRRTDVVGIFPDRDAIIRLVGAVLAEQHDEWIETHRYF CHHHHHHHHHCCCHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLEILAKVDATNKKSDTPEIGVTPEALTA HHHHHHHHCCCCCCCCCCCCCCCCHHHCC >Mature Secondary Structure TPKSSQPWVATLVRTVFDQADANEVGGQFDRVVEALSEKLPKAADHLSGAKADLLAFTT CCCCCCCHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHH YPREVWRQIWSSNPQERLNKEIRRRTDVVGIFPDRDAIIRLVGAVLAEQHDEWIETHRYF CHHHHHHHHHCCCHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLEILAKVDATNKKSDTPEIGVTPEALTA HHHHHHHHCCCCCCCCCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1663885; 12788972 [H]